Wall clock time and date at job start Tue Mar 31 2020 19:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47543 * 2 1 4 4 C 1.50698 * 109.47314 * 180.02562 * 3 2 1 5 5 C 1.35361 * 126.38976 * 84.99579 * 4 3 2 6 6 C 1.41498 * 105.50431 * 179.97438 * 5 4 3 7 7 C 1.47717 * 126.52245 * 179.97438 * 6 5 4 8 8 O 1.21568 * 119.99468 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00235 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99867 * 179.97438 * 9 7 6 11 11 H 1.09005 * 110.77060 * 328.52704 * 10 9 7 12 12 C 1.55056 * 110.87256 * 92.28594 * 10 9 7 13 13 O 1.44607 * 103.66561 * 81.64341 * 12 10 9 14 14 C 1.42829 * 106.74133 * 39.08024 * 13 12 10 15 15 C 1.52650 * 115.96887 * 202.49452 * 14 13 12 16 16 N 1.47222 * 87.78268 * 218.40479 * 15 14 13 17 17 C 1.36937 * 135.96722 * 206.40899 * 16 15 14 18 18 H 1.07997 * 119.99687 * 350.61132 * 17 16 15 19 19 C 1.38810 * 119.99916 * 170.61092 * 17 16 15 20 20 N 1.31618 * 119.99794 * 157.31820 * 19 17 16 21 21 Si 1.86804 * 120.00020 * 337.31591 * 19 17 16 22 22 H 1.48500 * 109.46862 * 90.00049 * 21 19 17 23 23 H 1.48500 * 109.46777 * 210.00095 * 21 19 17 24 24 H 1.48491 * 109.47169 * 330.00249 * 21 19 17 25 25 C 1.47222 * 88.06543 * 26.66831 * 16 15 14 26 26 C 1.53327 * 108.32685 * 334.32125 * 14 13 12 27 27 N 1.31813 * 106.96324 * 0.24268 * 6 5 4 28 28 N 1.28466 * 110.06997 * 359.59264 * 27 6 5 29 29 H 0.97003 * 124.88023 * 180.13032 * 28 27 6 30 30 H 1.08994 * 109.47616 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47015 * 300.00819 * 1 2 3 32 32 H 1.09008 * 109.47014 * 59.99625 * 1 2 3 33 33 H 1.09005 * 109.46798 * 239.99793 * 2 1 3 34 34 H 1.09000 * 109.46790 * 120.00257 * 2 1 3 35 35 H 1.08992 * 109.47063 * 59.99954 * 3 2 1 36 36 H 1.08999 * 109.46763 * 299.99936 * 3 2 1 37 37 H 1.07999 * 127.24893 * 359.96393 * 5 4 3 38 38 H 0.96997 * 119.99712 * 359.97438 * 9 7 6 39 39 H 1.09002 * 110.58661 * 200.18458 * 12 10 9 40 40 H 1.09000 * 110.58374 * 323.10073 * 12 10 9 41 41 H 1.08998 * 113.50312 * 103.67510 * 15 14 13 42 42 H 1.09003 * 113.55063 * 333.14249 * 15 14 13 43 43 H 0.96997 * 120.00266 * 3.59850 * 20 19 17 44 44 H 1.09003 * 113.50436 * 88.05945 * 25 16 15 45 45 H 1.09001 * 113.50110 * 218.60341 * 25 16 15 46 46 H 1.09001 * 110.56489 * 120.18153 * 26 14 13 47 47 H 1.09003 * 110.55841 * 243.02579 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.3497 1.3475 -1.0865 6 6 5.6719 1.3920 -0.5846 7 6 6.9161 1.3223 -1.3777 8 8 6.8605 1.2153 -2.5874 9 7 8.1129 1.3764 -0.7603 10 6 9.3468 1.3068 -1.5469 11 1 9.2036 0.6942 -2.4371 12 6 9.8436 2.7269 -1.9221 13 8 10.5427 3.1688 -0.7359 14 6 11.2486 2.0356 -0.2283 15 6 11.6142 2.0844 1.2530 16 7 12.8940 1.4483 0.8993 17 6 13.8084 0.6541 1.5384 18 1 13.7271 0.4854 2.6020 19 6 14.8397 0.0660 0.8191 20 7 15.9413 -0.3082 1.4346 21 14 14.6640 -0.1944 -1.0223 22 1 15.1759 0.9994 -1.7420 23 1 15.4443 -1.3904 -1.4297 24 1 13.2323 -0.3991 -1.3589 25 6 12.7634 2.0451 -0.4401 26 6 10.5194 0.7677 -0.6883 27 7 5.5823 1.5015 0.7259 28 7 4.3485 1.5376 1.0820 29 1 4.0374 1.6172 1.9973 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9563 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 4.0450 1.2567 -2.1186 38 1 8.1571 1.4615 0.2050 39 1 10.5231 2.6828 -2.7733 40 1 9.0005 3.3835 -2.1370 41 1 10.9767 1.4600 1.8789 42 1 11.7248 3.0970 1.6411 43 1 16.0121 -0.2211 2.3980 44 1 13.1858 3.0473 -0.5125 45 1 13.0958 1.3875 -1.2433 46 1 11.1796 0.1435 -1.2905 47 1 10.1417 0.2109 0.1694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053888992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:31 Heat of formation + Delta-G solvation = 52.247905 kcal Electronic energy + Delta-G solvation = -28518.667808 eV Core-core repulsion = 24512.198375 eV Total energy + Delta-G solvation = -4006.469433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.01297 -40.46332 -39.07296 -36.61824 -35.85933 -34.38981 -32.34597 -32.28819 -31.40746 -30.31254 -28.39653 -26.95481 -25.75226 -25.43167 -24.55683 -22.47063 -21.57700 -21.36037 -21.22894 -20.18829 -19.06077 -18.07597 -17.46888 -17.23760 -16.58841 -16.09525 -15.72996 -15.61694 -15.11123 -14.97557 -14.78674 -14.42393 -14.35135 -14.02966 -13.85570 -13.60600 -13.38558 -13.21469 -12.80025 -12.74925 -12.28007 -12.05781 -11.83950 -11.61792 -11.49774 -11.37090 -11.35029 -11.21058 -11.07776 -10.90497 -10.63881 -10.57452 -10.20421 -9.79707 -9.71167 -9.34070 -9.30075 -9.13111 -8.72618 -8.61036 -7.19480 -6.37789 -3.22739 1.32620 1.77288 2.48325 3.05718 3.26809 3.40730 3.45522 3.63225 4.06617 4.11405 4.18471 4.36473 4.48413 4.56958 4.58936 4.75597 4.83841 4.87877 4.92776 4.95490 5.08036 5.14382 5.15397 5.23870 5.28640 5.40844 5.45154 5.49270 5.51946 5.67923 5.72101 5.74324 5.80602 6.00154 6.05737 6.15858 6.19940 6.32187 6.34296 6.37905 6.42328 6.57382 6.63310 7.10744 7.31706 7.37782 7.62754 8.10714 8.23461 8.94438 9.49708 10.37299 11.13574 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.002258 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.605507 B =12400.034060 C =12679.628427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.050 4.050 4 C 0.015 3.985 5 C -0.174 4.174 6 C -0.009 4.009 7 C 0.604 3.396 8 O -0.535 6.535 9 N -0.700 5.700 10 C 0.108 3.892 11 H 0.110 0.890 12 C 0.038 3.962 13 O -0.358 6.358 14 C 0.056 3.944 15 C 0.132 3.868 16 N -0.616 5.616 17 C -0.311 4.311 18 H 0.080 0.920 19 C -0.018 4.018 20 N -0.920 5.920 21 Si 1.063 2.937 22 H -0.292 1.292 23 H -0.295 1.295 24 H -0.284 1.284 25 C 0.093 3.907 26 C -0.124 4.124 27 N -0.254 5.254 28 N -0.378 5.378 29 H 0.444 0.556 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.162 0.838 38 H 0.410 0.590 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.263 0.737 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.098 0.902 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.399 3.411 -3.621 31.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.089 4.089 4 C -0.111 4.111 5 C -0.202 4.202 6 C -0.170 4.170 7 C 0.389 3.611 8 O -0.410 6.410 9 N -0.351 5.351 10 C 0.003 3.997 11 H 0.128 0.872 12 C -0.040 4.040 13 O -0.276 6.276 14 C 0.015 3.985 15 C 0.006 3.994 16 N -0.346 5.346 17 C -0.436 4.436 18 H 0.097 0.903 19 C -0.219 4.219 20 N -0.561 5.561 21 Si 0.895 3.105 22 H -0.220 1.220 23 H -0.223 1.223 24 H -0.212 1.212 25 C -0.032 4.032 26 C -0.162 4.162 27 N -0.090 5.090 28 N -0.093 5.093 29 H 0.289 0.711 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.180 0.820 38 H 0.246 0.754 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.117 0.883 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -29.753 2.902 -4.695 30.260 hybrid contribution -1.298 0.530 1.669 2.179 sum -31.051 3.432 -3.026 31.386 Atomic orbital electron populations 1.21781 0.95148 1.02124 1.02025 1.21552 0.96078 0.95400 1.02957 1.20231 0.86185 0.98387 1.04135 1.21440 0.95079 1.07235 0.87317 1.21497 0.90338 1.08545 0.99833 1.21915 0.95178 1.10041 0.89878 1.16896 0.81677 0.76198 0.86344 1.90791 1.86835 1.50285 1.13110 1.45812 1.04558 1.73234 1.11492 1.22659 0.83552 0.97797 0.95714 0.87226 1.23960 0.96211 0.94563 0.89239 1.88780 1.64917 1.32821 1.41058 1.23688 0.92292 0.85059 0.97432 1.22418 0.87935 0.97117 0.91945 1.45571 1.22209 1.55526 1.11260 1.19916 1.06013 1.24863 0.92853 0.90259 1.25740 0.91854 0.97747 1.06526 1.70926 1.22575 1.51710 1.10884 0.83798 0.74670 0.76358 0.75642 1.21996 1.22289 1.21167 1.23098 0.92205 0.97440 0.90488 1.22801 0.95268 0.97371 1.00725 1.73595 1.01574 1.18789 1.15056 1.43325 1.02914 1.53101 1.09944 0.71117 0.92365 0.92655 0.92357 0.91086 0.91939 0.90551 0.88936 0.82024 0.75406 0.91008 0.89020 0.93285 0.93462 0.92675 0.93243 0.93353 0.88318 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.91 37.16 0.37 -0.14 16 2 C -0.12 -0.51 5.92 -26.73 -0.16 -0.66 16 3 C -0.05 -0.20 5.77 -27.88 -0.16 -0.37 16 4 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 5 C -0.17 -1.74 10.73 -39.37 -0.42 -2.16 16 6 C -0.01 -0.11 7.13 -82.76 -0.59 -0.70 16 7 C 0.60 8.47 7.82 -12.39 -0.10 8.38 16 8 O -0.54 -8.73 16.57 5.31 0.09 -8.64 16 9 N -0.70 -9.33 5.14 -52.70 -0.27 -9.60 16 10 C 0.11 1.51 3.51 -65.78 -0.23 1.28 16 11 H 0.11 1.50 7.54 -51.93 -0.39 1.11 16 12 C 0.04 0.55 7.42 38.24 0.28 0.83 16 13 O -0.36 -6.16 11.32 -35.23 -0.40 -6.56 16 14 C 0.06 1.04 1.66 -90.66 -0.15 0.88 16 15 C 0.13 2.71 8.20 -8.04 -0.07 2.64 16 16 N -0.62 -15.28 3.53 -184.60 -0.65 -15.93 16 17 C -0.31 -8.93 10.96 -15.06 -0.17 -9.10 16 18 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 19 C -0.02 -0.54 5.50 -17.43 -0.10 -0.64 16 20 N -0.92 -28.88 13.70 55.49 0.76 -28.12 16 21 Si 1.06 26.55 25.33 -169.99 -4.31 22.25 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.28 -6.43 5.50 56.52 0.31 -6.12 16 25 C 0.09 2.05 6.69 -7.88 -0.05 2.00 16 26 C -0.12 -2.00 6.11 -25.49 -0.16 -2.15 16 27 N -0.25 -2.77 11.92 33.42 0.40 -2.37 16 28 N -0.38 -2.83 6.83 33.50 0.23 -2.60 16 29 H 0.44 1.76 8.96 -190.44 -1.71 0.06 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.06 0.18 8.14 -51.92 -0.42 -0.25 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.41 5.23 8.35 -40.82 -0.34 4.89 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.05 0.94 7.91 -51.93 -0.41 0.53 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 1.07 3.52 -51.93 -0.18 0.89 16 46 H 0.10 1.68 6.78 -51.93 -0.35 1.33 16 47 H 0.09 1.41 7.70 -51.93 -0.40 1.01 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -34.96 383.05 -9.13 -44.09 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -8.52 Total: 2.05 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.23 Total: -0.33 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.47 Total: -58.62 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.31 Total: -15.20 kcal Atomic # 14 Polarization: 26.55 SS G_CDS: -4.31 Total: 22.25 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.96 -9.13 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053888992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.338 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds