Wall clock time and date at job start Tue Mar 31 2020 19:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47543 * 2 1 4 4 C 1.50698 * 109.47314 * 180.02562 * 3 2 1 5 5 C 1.35361 * 126.38976 * 84.99579 * 4 3 2 6 6 C 1.41498 * 105.50431 * 179.97438 * 5 4 3 7 7 C 1.47717 * 126.52245 * 179.97438 * 6 5 4 8 8 O 1.21568 * 119.99468 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00235 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99867 * 179.97438 * 9 7 6 11 11 H 1.09005 * 110.77060 * 328.52704 * 10 9 7 12 12 C 1.55056 * 110.87256 * 92.28594 * 10 9 7 13 13 O 1.44607 * 103.66561 * 81.64341 * 12 10 9 14 14 C 1.42829 * 106.74133 * 39.08024 * 13 12 10 15 15 C 1.52650 * 115.96887 * 202.49452 * 14 13 12 16 16 N 1.47222 * 87.78268 * 218.40479 * 15 14 13 17 17 C 1.36937 * 135.96722 * 206.40899 * 16 15 14 18 18 H 1.07997 * 119.99687 * 350.61132 * 17 16 15 19 19 C 1.38810 * 119.99916 * 170.61092 * 17 16 15 20 20 N 1.31618 * 119.99794 * 157.31820 * 19 17 16 21 21 Si 1.86804 * 120.00020 * 337.31591 * 19 17 16 22 22 H 1.48500 * 109.46862 * 90.00049 * 21 19 17 23 23 H 1.48500 * 109.46777 * 210.00095 * 21 19 17 24 24 H 1.48491 * 109.47169 * 330.00249 * 21 19 17 25 25 C 1.47222 * 88.06543 * 26.66831 * 16 15 14 26 26 C 1.53327 * 108.32685 * 334.32125 * 14 13 12 27 27 N 1.31813 * 106.96324 * 0.24268 * 6 5 4 28 28 N 1.28466 * 110.06997 * 359.59264 * 27 6 5 29 29 H 0.97003 * 124.88023 * 180.13032 * 28 27 6 30 30 H 1.08994 * 109.47616 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47015 * 300.00819 * 1 2 3 32 32 H 1.09008 * 109.47014 * 59.99625 * 1 2 3 33 33 H 1.09005 * 109.46798 * 239.99793 * 2 1 3 34 34 H 1.09000 * 109.46790 * 120.00257 * 2 1 3 35 35 H 1.08992 * 109.47063 * 59.99954 * 3 2 1 36 36 H 1.08999 * 109.46763 * 299.99936 * 3 2 1 37 37 H 1.07999 * 127.24893 * 359.96393 * 5 4 3 38 38 H 0.96997 * 119.99712 * 359.97438 * 9 7 6 39 39 H 1.09002 * 110.58661 * 200.18458 * 12 10 9 40 40 H 1.09000 * 110.58374 * 323.10073 * 12 10 9 41 41 H 1.08998 * 113.50312 * 103.67510 * 15 14 13 42 42 H 1.09003 * 113.55063 * 333.14249 * 15 14 13 43 43 H 0.96997 * 120.00266 * 3.59850 * 20 19 17 44 44 H 1.09003 * 113.50436 * 88.05945 * 25 16 15 45 45 H 1.09001 * 113.50110 * 218.60341 * 25 16 15 46 46 H 1.09001 * 110.56489 * 120.18153 * 26 14 13 47 47 H 1.09003 * 110.55841 * 243.02579 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.3497 1.3475 -1.0865 6 6 5.6719 1.3920 -0.5846 7 6 6.9161 1.3223 -1.3777 8 8 6.8605 1.2153 -2.5874 9 7 8.1129 1.3764 -0.7603 10 6 9.3468 1.3068 -1.5469 11 1 9.2036 0.6942 -2.4371 12 6 9.8436 2.7269 -1.9221 13 8 10.5427 3.1688 -0.7359 14 6 11.2486 2.0356 -0.2283 15 6 11.6142 2.0844 1.2530 16 7 12.8940 1.4483 0.8993 17 6 13.8084 0.6541 1.5384 18 1 13.7271 0.4854 2.6020 19 6 14.8397 0.0660 0.8191 20 7 15.9413 -0.3082 1.4346 21 14 14.6640 -0.1944 -1.0223 22 1 15.1759 0.9994 -1.7420 23 1 15.4443 -1.3904 -1.4297 24 1 13.2323 -0.3991 -1.3589 25 6 12.7634 2.0451 -0.4401 26 6 10.5194 0.7677 -0.6883 27 7 5.5823 1.5015 0.7259 28 7 4.3485 1.5376 1.0820 29 1 4.0374 1.6172 1.9973 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9563 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 4.0450 1.2567 -2.1186 38 1 8.1571 1.4615 0.2050 39 1 10.5231 2.6828 -2.7733 40 1 9.0005 3.3835 -2.1370 41 1 10.9767 1.4600 1.8789 42 1 11.7248 3.0970 1.6411 43 1 16.0121 -0.2211 2.3980 44 1 13.1858 3.0473 -0.5125 45 1 13.0958 1.3875 -1.2433 46 1 11.1796 0.1435 -1.2905 47 1 10.1417 0.2109 0.1694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053888992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:30 Heat of formation + Delta-G solvation = 25.822392 kcal Electronic energy + Delta-G solvation = -28519.813704 eV Core-core repulsion = 24512.198375 eV Total energy + Delta-G solvation = -4007.615329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.72217 -41.84313 -40.28596 -38.15473 -36.24292 -35.56926 -34.51863 -33.10423 -32.03250 -31.43814 -30.11102 -27.41393 -27.34454 -27.11470 -25.51546 -23.40987 -22.90152 -22.36692 -21.93274 -21.21663 -20.70963 -19.49792 -18.73072 -18.20861 -17.76678 -17.37650 -16.84604 -16.53558 -16.32540 -16.25622 -15.92050 -15.69545 -15.38047 -15.09164 -15.00215 -14.72629 -14.54281 -14.24787 -13.94811 -13.85932 -13.42769 -13.05008 -12.84444 -12.83662 -12.69547 -12.56960 -12.45306 -12.24693 -12.17446 -12.12310 -11.90709 -11.61025 -11.53243 -11.37106 -11.24706 -10.79333 -10.58391 -10.45130 -10.00959 -9.95590 -9.27582 -8.69497 -5.47108 0.46782 1.09156 1.39284 1.49707 1.67731 1.81248 2.15926 2.29165 2.52893 2.67992 2.92345 3.26046 3.32825 3.41907 3.51045 3.55869 3.65139 3.91273 3.97073 4.17566 4.23442 4.30369 4.45193 4.47283 4.53870 4.61496 4.63912 4.65360 4.69130 4.69828 4.74337 4.78601 4.86008 4.89558 4.94792 4.97087 4.99246 5.17849 5.24015 5.30552 5.35454 5.37440 5.48233 5.93208 5.95469 6.07636 6.38476 6.66068 6.83529 7.07862 7.31184 8.26102 8.84146 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.002258 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.605507 B =12400.034060 C =12679.628427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.047 4.047 4 C 0.036 3.964 5 C -0.196 4.196 6 C -0.036 4.036 7 C 0.605 3.395 8 O -0.563 6.563 9 N -0.696 5.696 10 C 0.118 3.882 11 H 0.118 0.882 12 C 0.036 3.964 13 O -0.365 6.365 14 C 0.082 3.918 15 C 0.128 3.872 16 N -0.642 5.642 17 C -0.299 4.299 18 H 0.049 0.951 19 C -0.075 4.075 20 N -0.956 5.956 21 Si 1.098 2.902 22 H -0.281 1.281 23 H -0.301 1.301 24 H -0.247 1.247 25 C 0.083 3.917 26 C -0.121 4.121 27 N -0.269 5.269 28 N -0.363 5.363 29 H 0.460 0.540 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.164 0.836 38 H 0.413 0.587 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.249 0.751 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.095 0.905 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.700 4.078 -4.660 35.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.090 4.090 5 C -0.224 4.224 6 C -0.195 4.195 7 C 0.391 3.609 8 O -0.441 6.441 9 N -0.347 5.347 10 C 0.013 3.987 11 H 0.135 0.865 12 C -0.041 4.041 13 O -0.282 6.282 14 C 0.041 3.959 15 C 0.003 3.997 16 N -0.372 5.372 17 C -0.426 4.426 18 H 0.067 0.933 19 C -0.269 4.269 20 N -0.599 5.599 21 Si 0.924 3.076 22 H -0.208 1.208 23 H -0.229 1.229 24 H -0.173 1.173 25 C -0.042 4.042 26 C -0.159 4.159 27 N -0.107 5.107 28 N -0.080 5.080 29 H 0.308 0.692 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.181 0.819 38 H 0.250 0.750 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.114 0.886 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -33.110 3.607 -5.701 33.790 hybrid contribution -0.403 0.415 2.122 2.199 sum -33.513 4.022 -3.579 33.942 Atomic orbital electron populations 1.21764 0.94311 1.02180 1.02650 1.21516 0.96741 0.95237 1.02310 1.20371 0.83645 0.98685 1.05845 1.21817 0.96329 1.04617 0.86249 1.21680 0.90030 1.09815 1.00866 1.21781 0.95111 1.12162 0.90495 1.17133 0.82238 0.75387 0.86159 1.90764 1.87299 1.51712 1.14292 1.45770 1.04318 1.73034 1.11575 1.22538 0.83098 0.97580 0.95513 0.86452 1.24169 0.96649 0.94773 0.88554 1.88771 1.64812 1.32370 1.42287 1.23199 0.90649 0.86552 0.95518 1.22550 0.86289 0.96888 0.93986 1.45592 1.23256 1.55514 1.12828 1.19769 1.06506 1.24499 0.91806 0.93319 1.27020 0.91503 0.97907 1.10459 1.71041 1.24319 1.54478 1.10091 0.83415 0.76767 0.76384 0.71033 1.20792 1.22873 1.17254 1.23311 0.94934 0.97017 0.88936 1.22760 0.95742 0.96207 1.01176 1.73523 1.03192 1.19418 1.14531 1.43428 1.02110 1.51493 1.10989 0.69190 0.92656 0.91764 0.92001 0.92271 0.92152 0.88162 0.87928 0.81852 0.75044 0.89374 0.88041 0.91959 0.93247 0.94195 0.93396 0.93052 0.88615 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 71.98 0.71 0.07 16 2 C -0.12 -0.73 5.92 30.59 0.18 -0.54 16 3 C -0.05 -0.24 5.77 29.85 0.17 -0.06 16 4 C 0.04 0.44 6.48 41.40 0.27 0.71 16 5 C -0.20 -3.66 10.73 22.41 0.24 -3.42 16 6 C -0.04 -0.84 7.13 42.46 0.30 -0.53 16 7 C 0.60 16.26 7.82 86.75 0.68 16.94 16 8 O -0.56 -17.84 16.57 -3.93 -0.07 -17.90 16 9 N -0.70 -17.34 5.14 -438.93 -2.26 -19.60 16 10 C 0.12 3.02 3.51 46.39 0.16 3.18 16 11 H 0.12 2.91 7.54 -2.38 -0.02 2.89 16 12 C 0.04 0.92 7.42 72.69 0.54 1.46 16 13 O -0.36 -11.61 11.32 -148.98 -1.69 -13.30 16 14 C 0.08 2.84 1.66 -10.81 -0.02 2.82 16 15 C 0.13 5.08 8.20 83.40 0.68 5.76 16 16 N -0.64 -31.45 3.53 -739.07 -2.61 -34.06 16 17 C -0.30 -17.44 10.96 84.03 0.92 -16.52 16 18 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 19 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 20 N -0.96 -61.71 13.70 21.65 0.30 -61.41 16 21 Si 1.10 52.92 25.33 68.60 1.74 54.65 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 24 H -0.25 -10.31 5.50 99.48 0.55 -9.77 16 25 C 0.08 3.50 6.69 83.50 0.56 4.06 16 26 C -0.12 -3.60 6.11 31.40 0.19 -3.41 16 27 N -0.27 -5.43 11.92 -48.17 -0.57 -6.00 16 28 N -0.36 -4.58 6.83 -47.93 -0.33 -4.91 16 29 H 0.46 2.36 8.96 -219.99 -1.97 0.39 16 30 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.06 0.23 8.14 -2.38 -0.02 0.21 16 33 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 38 H 0.41 9.83 8.35 -92.71 -0.77 9.05 16 39 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.06 2.29 7.91 -2.39 -0.02 2.27 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.25 16.13 8.73 -92.71 -0.81 15.32 16 44 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.05 2.14 3.52 -2.39 -0.01 2.13 16 46 H 0.10 2.96 6.78 -2.39 -0.02 2.95 16 47 H 0.09 2.73 7.70 -2.39 -0.02 2.72 16 Total: -1.00 -76.71 383.05 -1.36 -78.07 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -1.94 Total: 17.96 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 6.06 Total: 6.49 kcal Atomic # 7 Polarization: -120.50 SS G_CDS: -5.47 Total: -125.97 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -1.75 Total: -31.20 kcal Atomic # 14 Polarization: 52.92 SS G_CDS: 1.74 Total: 54.65 kcal Total: -76.71 -1.36 -78.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053888992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.889 kcal (2) G-P(sol) polarization free energy of solvation -76.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds