Wall clock time and date at job start Tue Mar 31 2020 19:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46932 * 2 1 4 4 C 1.50700 * 109.47377 * 119.99864 * 2 1 3 5 5 C 1.35356 * 126.38697 * 145.00360 * 4 2 1 6 6 C 1.41511 * 105.50424 * 180.02562 * 5 4 2 7 7 C 1.47711 * 126.51821 * 179.97438 * 6 5 4 8 8 O 1.21570 * 120.00262 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99725 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99673 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.77470 * 328.52356 * 10 9 7 12 12 C 1.55065 * 110.87231 * 92.28856 * 10 9 7 13 13 O 1.44603 * 103.66968 * 81.63760 * 12 10 9 14 14 C 1.42840 * 106.73701 * 39.08381 * 13 12 10 15 15 C 1.52650 * 115.96120 * 202.49258 * 14 13 12 16 16 N 1.47225 * 87.77974 * 218.40494 * 15 14 13 17 17 C 1.36932 * 135.96623 * 206.41388 * 16 15 14 18 18 H 1.08007 * 119.99991 * 8.61441 * 17 16 15 19 19 C 1.38813 * 120.00120 * 188.61611 * 17 16 15 20 20 N 1.31617 * 119.99684 * 18.60951 * 19 17 16 21 21 Si 1.86795 * 120.00179 * 198.60693 * 19 17 16 22 22 H 1.48505 * 109.46945 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47336 * 119.99988 * 21 19 17 24 24 H 1.48501 * 109.47405 * 240.00119 * 21 19 17 25 25 C 1.47219 * 88.06647 * 26.66831 * 16 15 14 26 26 C 1.53319 * 108.32950 * 334.31764 * 14 13 12 27 27 N 1.31804 * 106.96087 * 0.26272 * 6 5 4 28 28 N 1.28470 * 110.07469 * 359.55925 * 27 6 5 29 29 H 0.96997 * 124.88642 * 180.16915 * 28 27 6 30 30 H 1.08993 * 109.47169 * 300.00085 * 1 2 3 31 31 H 1.09001 * 109.47090 * 60.00141 * 1 2 3 32 32 H 1.09000 * 109.46671 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47731 * 240.00099 * 2 1 3 34 34 H 1.09003 * 109.47289 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47118 * 299.99842 * 3 2 1 36 36 H 1.09006 * 109.47520 * 59.99747 * 3 2 1 37 37 H 1.08000 * 127.25332 * 0.02562 * 5 4 2 38 38 H 0.97001 * 120.00175 * 359.97438 * 9 7 6 39 39 H 1.08998 * 110.58726 * 200.18567 * 12 10 9 40 40 H 1.09000 * 110.58483 * 323.09182 * 12 10 9 41 41 H 1.08996 * 113.50421 * 103.67644 * 15 14 13 42 42 H 1.08998 * 113.55640 * 333.13809 * 15 14 13 43 43 H 0.96999 * 120.00505 * 5.68979 * 20 19 17 44 44 H 1.09004 * 113.50062 * 88.05827 * 25 16 15 45 45 H 1.08994 * 113.49940 * 218.60260 * 25 16 15 46 46 H 1.08999 * 110.56736 * 120.18132 * 26 14 13 47 47 H 1.09006 * 110.56047 * 243.02958 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 3.1417 -1.4813 1.3159 6 6 3.1925 -1.9234 2.6592 7 6 4.2216 -2.7972 3.2587 8 8 5.1408 -3.2091 2.5781 9 7 4.1408 -3.1386 4.5600 10 6 5.1617 -4.0048 5.1546 11 1 5.5533 -4.7041 4.4160 12 6 6.3018 -3.1632 5.7842 13 8 5.7731 -2.7830 7.0753 14 6 5.0601 -3.9145 7.5772 15 6 3.9943 -3.6198 8.6295 16 7 4.4101 -4.8552 9.3139 17 6 3.8187 -5.7643 10.1498 18 1 2.7555 -5.7167 10.3340 19 6 4.5855 -6.7472 10.7604 20 7 5.8913 -6.6051 10.8452 21 14 3.7644 -8.2714 11.4617 22 1 2.2981 -8.1899 11.2404 23 1 4.3013 -9.4790 10.7845 24 1 4.0406 -8.3567 12.9183 25 6 5.7420 -4.6817 8.7112 26 6 4.5968 -4.7600 6.3851 27 7 2.1436 -1.4122 3.2722 28 7 1.4595 -0.6969 2.4532 29 1 0.6460 -0.2195 2.6794 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.8408 -1.7108 0.5254 38 1 3.4071 -2.8103 5.1030 39 1 7.2029 -3.7652 5.9013 40 1 6.5057 -2.2802 5.1785 41 1 2.9769 -3.6596 8.2407 42 1 4.1902 -2.7162 9.2067 43 1 6.3090 -5.7787 10.5563 44 1 6.4133 -4.0661 9.3101 45 1 6.1996 -5.6177 8.3913 46 1 5.0151 -5.7649 6.4428 47 1 3.5082 -4.7992 6.3436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053932375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:37 Heat of formation + Delta-G solvation = 46.579532 kcal Electronic energy + Delta-G solvation = -28603.367829 eV Core-core repulsion = 24596.652597 eV Total energy + Delta-G solvation = -4006.715232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.03710 -40.36957 -39.01663 -36.55035 -36.21293 -34.34212 -32.27734 -32.23536 -30.66491 -29.76385 -27.95982 -27.76450 -25.84202 -24.88547 -24.53561 -23.10580 -22.05937 -21.34236 -21.08119 -20.05225 -18.86592 -17.92464 -17.45140 -17.04859 -16.58805 -16.08359 -15.50488 -15.26725 -14.96896 -14.80499 -14.50806 -14.37040 -14.08289 -13.96864 -13.80193 -13.67297 -13.52736 -13.19617 -12.83328 -12.70852 -12.22646 -11.94908 -11.83375 -11.70613 -11.48363 -11.36142 -11.17893 -11.08837 -11.02831 -10.84394 -10.65956 -10.16802 -10.10435 -10.04143 -9.68987 -9.52228 -9.29529 -9.20050 -8.73452 -8.63622 -7.05368 -6.13303 -3.16312 1.35281 1.80342 2.50027 3.08681 3.29703 3.48587 3.54065 3.64999 4.00642 4.14710 4.16999 4.30317 4.49095 4.54877 4.66983 4.79212 4.95524 4.98573 5.01186 5.06478 5.11369 5.17347 5.21236 5.24077 5.32054 5.42715 5.45772 5.46102 5.52683 5.65770 5.68814 5.78857 5.86413 6.06967 6.07662 6.19716 6.32370 6.44691 6.47950 6.49684 6.63143 6.67496 6.75966 7.23972 7.36452 7.47427 7.65552 8.13784 8.29141 8.89761 9.74254 10.47185 11.27646 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.002216 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.999624 B =12632.334475 C =13165.325693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.026 4.026 3 C -0.147 4.147 4 C 0.021 3.979 5 C -0.175 4.175 6 C -0.009 4.009 7 C 0.604 3.396 8 O -0.536 6.536 9 N -0.700 5.700 10 C 0.108 3.892 11 H 0.109 0.891 12 C 0.040 3.960 13 O -0.360 6.360 14 C 0.052 3.948 15 C 0.128 3.872 16 N -0.608 5.608 17 C -0.314 4.314 18 H 0.076 0.924 19 C -0.033 4.033 20 N -0.931 5.931 21 Si 1.082 2.918 22 H -0.292 1.292 23 H -0.289 1.289 24 H -0.293 1.293 25 C 0.124 3.876 26 C -0.116 4.116 27 N -0.254 5.254 28 N -0.377 5.377 29 H 0.443 0.557 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.162 0.838 38 H 0.410 0.590 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.039 0.961 43 H 0.267 0.733 44 H 0.040 0.960 45 H 0.054 0.946 46 H 0.095 0.905 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.594 14.753 -23.959 29.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.046 4.046 3 C -0.205 4.205 4 C -0.105 4.105 5 C -0.203 4.203 6 C -0.170 4.170 7 C 0.388 3.612 8 O -0.411 6.411 9 N -0.351 5.351 10 C 0.003 3.997 11 H 0.127 0.873 12 C -0.038 4.038 13 O -0.277 6.277 14 C 0.012 3.988 15 C 0.002 3.998 16 N -0.338 5.338 17 C -0.440 4.440 18 H 0.094 0.906 19 C -0.233 4.233 20 N -0.574 5.574 21 Si 0.911 3.089 22 H -0.219 1.219 23 H -0.216 1.216 24 H -0.220 1.220 25 C -0.002 4.002 26 C -0.154 4.154 27 N -0.090 5.090 28 N -0.091 5.091 29 H 0.288 0.712 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.180 0.820 38 H 0.245 0.755 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.114 0.886 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.241 12.991 -22.394 27.489 hybrid contribution -0.669 1.876 -0.910 2.190 sum -9.910 14.867 -23.304 29.365 Atomic orbital electron populations 1.21911 0.94151 1.02596 1.02559 1.19780 0.95889 0.95869 0.93104 1.21883 1.02029 0.94321 1.02249 1.21378 0.96652 1.03534 0.88938 1.21500 0.99497 1.02349 0.96937 1.21914 0.96635 1.04529 0.93893 1.16897 0.83468 0.79137 0.81648 1.90791 1.33923 1.54660 1.61684 1.45815 1.28780 1.50497 1.09960 1.22666 0.89007 0.92216 0.95850 0.87310 1.23934 0.95669 0.99435 0.84808 1.88771 1.70413 1.35673 1.32889 1.23704 0.95194 0.86723 0.93222 1.22389 0.95285 0.91125 0.91009 1.45643 1.09120 1.22963 1.56037 1.19799 0.92838 1.07635 1.23737 0.90597 1.25857 0.96178 1.02816 0.98425 1.70692 1.09918 1.29386 1.47399 0.83267 0.73952 0.75601 0.76064 1.21854 1.21601 1.22045 1.22665 0.90133 0.96902 0.90495 1.22686 1.02441 0.99595 0.90661 1.73599 1.05948 1.08650 1.20805 1.43275 1.22628 1.36883 1.06356 0.71213 0.92828 0.91165 0.91915 0.88280 0.91772 0.91575 0.92651 0.82025 0.75453 0.91036 0.89196 0.93510 0.94293 0.92129 0.94224 0.92779 0.88607 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 8.95 37.16 0.33 -0.17 16 2 C -0.03 -0.12 3.32 -91.77 -0.30 -0.42 16 3 C -0.15 -0.60 9.17 37.16 0.34 -0.26 16 4 C 0.02 0.16 5.92 -82.21 -0.49 -0.33 16 5 C -0.17 -1.80 10.73 -39.36 -0.42 -2.22 16 6 C -0.01 -0.11 7.13 -82.76 -0.59 -0.70 16 7 C 0.60 8.69 7.82 -12.39 -0.10 8.59 16 8 O -0.54 -8.94 16.57 5.30 0.09 -8.86 16 9 N -0.70 -9.61 5.14 -52.70 -0.27 -9.88 16 10 C 0.11 1.56 3.52 -65.77 -0.23 1.32 16 11 H 0.11 1.54 7.54 -51.93 -0.39 1.15 16 12 C 0.04 0.60 7.42 38.25 0.28 0.88 16 13 O -0.36 -6.57 11.32 -35.23 -0.40 -6.97 16 14 C 0.05 1.01 1.66 -90.66 -0.15 0.86 16 15 C 0.13 2.76 8.20 -8.03 -0.07 2.69 16 16 N -0.61 -15.82 3.65 -184.60 -0.67 -16.49 16 17 C -0.31 -8.96 10.65 -15.06 -0.16 -9.12 16 18 H 0.08 2.13 7.90 -52.48 -0.41 1.71 16 19 C -0.03 -0.96 5.45 -17.43 -0.09 -1.05 16 20 N -0.93 -28.93 13.34 55.49 0.74 -28.19 16 21 Si 1.08 25.73 29.96 -169.99 -5.09 20.63 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.12 2.94 5.68 -7.88 -0.04 2.90 16 26 C -0.12 -1.90 6.11 -25.49 -0.16 -2.06 16 27 N -0.25 -2.84 11.92 33.42 0.40 -2.44 16 28 N -0.38 -2.96 6.64 33.50 0.22 -2.74 16 29 H 0.44 2.07 8.14 -190.44 -1.55 0.52 16 30 H 0.05 0.13 7.43 -51.93 -0.39 -0.25 16 31 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16 38 H 0.41 5.41 8.35 -40.82 -0.34 5.07 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.05 0.93 7.91 -51.93 -0.41 0.52 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.27 8.29 5.92 -40.82 -0.24 8.05 16 44 H 0.04 0.99 7.96 -51.93 -0.41 0.57 16 45 H 0.05 1.34 7.79 -51.93 -0.40 0.94 16 46 H 0.10 1.63 7.82 -51.93 -0.41 1.23 16 47 H 0.09 1.38 7.70 -51.93 -0.40 0.98 16 LS Contribution 387.38 15.07 5.84 5.84 Total: -1.00 -35.37 387.38 -9.38 -44.74 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -8.38 Total: 3.43 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.85 Total: 0.91 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.42 Total: -59.73 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.31 Total: -15.82 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.09 Total: 20.63 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.37 -9.38 -44.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053932375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.323 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds