Wall clock time and date at job start Tue Mar 31 2020 19:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46932 * 2 1 4 4 C 1.50700 * 109.47377 * 119.99864 * 2 1 3 5 5 C 1.35356 * 126.38697 * 145.00360 * 4 2 1 6 6 C 1.41511 * 105.50424 * 180.02562 * 5 4 2 7 7 C 1.47711 * 126.51821 * 179.97438 * 6 5 4 8 8 O 1.21570 * 120.00262 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99725 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99673 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.77470 * 328.52356 * 10 9 7 12 12 C 1.55065 * 110.87231 * 92.28856 * 10 9 7 13 13 O 1.44603 * 103.66968 * 81.63760 * 12 10 9 14 14 C 1.42840 * 106.73701 * 39.08381 * 13 12 10 15 15 C 1.52650 * 115.96120 * 202.49258 * 14 13 12 16 16 N 1.47225 * 87.77974 * 218.40494 * 15 14 13 17 17 C 1.36932 * 135.96623 * 206.41388 * 16 15 14 18 18 H 1.08007 * 119.99991 * 8.61441 * 17 16 15 19 19 C 1.38813 * 120.00120 * 188.61611 * 17 16 15 20 20 N 1.31617 * 119.99684 * 18.60951 * 19 17 16 21 21 Si 1.86795 * 120.00179 * 198.60693 * 19 17 16 22 22 H 1.48505 * 109.46945 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47336 * 119.99988 * 21 19 17 24 24 H 1.48501 * 109.47405 * 240.00119 * 21 19 17 25 25 C 1.47219 * 88.06647 * 26.66831 * 16 15 14 26 26 C 1.53319 * 108.32950 * 334.31764 * 14 13 12 27 27 N 1.31804 * 106.96087 * 0.26272 * 6 5 4 28 28 N 1.28470 * 110.07469 * 359.55925 * 27 6 5 29 29 H 0.96997 * 124.88642 * 180.16915 * 28 27 6 30 30 H 1.08993 * 109.47169 * 300.00085 * 1 2 3 31 31 H 1.09001 * 109.47090 * 60.00141 * 1 2 3 32 32 H 1.09000 * 109.46671 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47731 * 240.00099 * 2 1 3 34 34 H 1.09003 * 109.47289 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47118 * 299.99842 * 3 2 1 36 36 H 1.09006 * 109.47520 * 59.99747 * 3 2 1 37 37 H 1.08000 * 127.25332 * 0.02562 * 5 4 2 38 38 H 0.97001 * 120.00175 * 359.97438 * 9 7 6 39 39 H 1.08998 * 110.58726 * 200.18567 * 12 10 9 40 40 H 1.09000 * 110.58483 * 323.09182 * 12 10 9 41 41 H 1.08996 * 113.50421 * 103.67644 * 15 14 13 42 42 H 1.08998 * 113.55640 * 333.13809 * 15 14 13 43 43 H 0.96999 * 120.00505 * 5.68979 * 20 19 17 44 44 H 1.09004 * 113.50062 * 88.05827 * 25 16 15 45 45 H 1.08994 * 113.49940 * 218.60260 * 25 16 15 46 46 H 1.08999 * 110.56736 * 120.18132 * 26 14 13 47 47 H 1.09006 * 110.56047 * 243.02958 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 3.1417 -1.4813 1.3159 6 6 3.1925 -1.9234 2.6592 7 6 4.2216 -2.7972 3.2587 8 8 5.1408 -3.2091 2.5781 9 7 4.1408 -3.1386 4.5600 10 6 5.1617 -4.0048 5.1546 11 1 5.5533 -4.7041 4.4160 12 6 6.3018 -3.1632 5.7842 13 8 5.7731 -2.7830 7.0753 14 6 5.0601 -3.9145 7.5772 15 6 3.9943 -3.6198 8.6295 16 7 4.4101 -4.8552 9.3139 17 6 3.8187 -5.7643 10.1498 18 1 2.7555 -5.7167 10.3340 19 6 4.5855 -6.7472 10.7604 20 7 5.8913 -6.6051 10.8452 21 14 3.7644 -8.2714 11.4617 22 1 2.2981 -8.1899 11.2404 23 1 4.3013 -9.4790 10.7845 24 1 4.0406 -8.3567 12.9183 25 6 5.7420 -4.6817 8.7112 26 6 4.5968 -4.7600 6.3851 27 7 2.1436 -1.4122 3.2722 28 7 1.4595 -0.6969 2.4532 29 1 0.6460 -0.2195 2.6794 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.8408 -1.7108 0.5254 38 1 3.4071 -2.8103 5.1030 39 1 7.2029 -3.7652 5.9013 40 1 6.5057 -2.2802 5.1785 41 1 2.9769 -3.6596 8.2407 42 1 4.1902 -2.7162 9.2067 43 1 6.3090 -5.7787 10.5563 44 1 6.4133 -4.0661 9.3101 45 1 6.1996 -5.6177 8.3913 46 1 5.0151 -5.7649 6.4428 47 1 3.5082 -4.7992 6.3436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053932375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:36 Heat of formation + Delta-G solvation = 20.922210 kcal Electronic energy + Delta-G solvation = -28604.480414 eV Core-core repulsion = 24596.652597 eV Total energy + Delta-G solvation = -4007.827817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.78179 -41.83742 -40.30371 -38.19461 -36.63992 -35.60502 -34.37282 -33.08374 -31.75441 -30.62655 -29.71269 -28.04383 -27.60813 -26.65637 -25.54658 -24.00992 -23.65232 -22.32778 -21.95565 -21.06751 -20.54475 -19.47664 -18.62725 -18.04994 -17.76842 -16.90823 -16.81187 -16.54506 -16.27037 -16.00389 -15.82496 -15.68386 -15.48209 -15.15921 -14.97810 -14.76885 -14.47368 -14.29218 -13.93107 -13.84180 -13.12686 -13.05825 -12.81596 -12.75330 -12.69751 -12.49597 -12.38891 -12.29689 -12.18067 -12.10310 -11.90459 -11.85628 -11.67887 -11.58322 -11.31640 -10.76853 -10.69831 -10.49824 -10.05407 -9.98896 -9.17992 -8.41167 -5.40035 0.44940 1.08477 1.57266 1.67739 1.77908 1.81645 2.12377 2.27222 2.52524 2.79348 3.16071 3.26113 3.30980 3.44089 3.49132 3.53582 3.54923 3.85746 3.89066 4.17506 4.23334 4.27750 4.40485 4.51835 4.57670 4.57972 4.59668 4.64735 4.69742 4.71994 4.73750 4.77257 4.79395 4.86315 4.95880 4.96611 5.01482 5.15817 5.23192 5.27469 5.32429 5.36253 5.37817 5.93097 6.04228 6.08725 6.36186 6.63749 6.81613 7.05713 7.55975 8.36492 9.01719 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.002216 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.999624 B =12632.334475 C =13165.325693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.024 4.024 3 C -0.146 4.146 4 C 0.042 3.958 5 C -0.196 4.196 6 C -0.035 4.035 7 C 0.605 3.395 8 O -0.564 6.564 9 N -0.695 5.695 10 C 0.121 3.879 11 H 0.117 0.883 12 C 0.037 3.963 13 O -0.369 6.369 14 C 0.082 3.918 15 C 0.126 3.874 16 N -0.635 5.635 17 C -0.319 4.319 18 H 0.080 0.920 19 C -0.091 4.091 20 N -0.965 5.965 21 Si 1.133 2.867 22 H -0.266 1.266 23 H -0.287 1.287 24 H -0.292 1.292 25 C 0.121 3.879 26 C -0.108 4.108 27 N -0.268 5.268 28 N -0.362 5.362 29 H 0.458 0.542 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.164 0.836 38 H 0.413 0.587 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.036 0.964 43 H 0.253 0.747 44 H 0.019 0.981 45 H 0.034 0.966 46 H 0.090 0.910 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.854 15.690 -25.889 32.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.044 4.044 3 C -0.203 4.203 4 C -0.085 4.085 5 C -0.224 4.224 6 C -0.194 4.194 7 C 0.391 3.609 8 O -0.441 6.441 9 N -0.346 5.346 10 C 0.016 3.984 11 H 0.135 0.865 12 C -0.041 4.041 13 O -0.287 6.287 14 C 0.040 3.960 15 C 0.001 3.999 16 N -0.365 5.365 17 C -0.446 4.446 18 H 0.097 0.903 19 C -0.284 4.284 20 N -0.609 5.609 21 Si 0.956 3.044 22 H -0.191 1.191 23 H -0.213 1.213 24 H -0.219 1.219 25 C -0.006 4.006 26 C -0.146 4.146 27 N -0.105 5.105 28 N -0.079 5.079 29 H 0.306 0.694 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.182 0.818 38 H 0.250 0.750 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.053 0.947 46 H 0.108 0.892 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.540 13.978 -24.338 30.347 hybrid contribution 0.004 1.748 -0.374 1.788 sum -11.537 15.726 -24.712 31.482 Atomic orbital electron populations 1.21925 0.92815 1.02616 1.03791 1.19916 0.96915 0.95852 0.91672 1.21878 1.01378 0.93949 1.03137 1.21778 0.95286 1.01904 0.89547 1.21682 1.00855 1.03505 0.96364 1.21749 0.97131 1.05662 0.94906 1.17143 0.83481 0.78874 0.81398 1.90766 1.35203 1.55893 1.62262 1.45751 1.28612 1.50248 1.09966 1.22487 0.88728 0.92093 0.95142 0.86546 1.24135 0.96157 1.00320 0.83469 1.88760 1.70446 1.35054 1.34439 1.23237 0.93135 0.86604 0.92986 1.22507 0.97106 0.89231 0.91059 1.45923 1.10246 1.24431 1.55860 1.20152 0.93223 1.08002 1.23189 0.90262 1.27392 0.96036 1.05897 0.99047 1.70818 1.11234 1.29037 1.49860 0.82612 0.74503 0.71984 0.75261 1.19056 1.21329 1.21894 1.22665 0.89407 0.96352 0.92138 1.22600 1.02975 0.98930 0.90137 1.73527 1.06013 1.09347 1.21599 1.43357 1.22597 1.35758 1.06138 0.69423 0.91894 0.89771 0.92483 0.87463 0.92829 0.89884 0.92623 0.81790 0.75012 0.90073 0.88033 0.91301 0.94669 0.93698 0.96281 0.94740 0.89178 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 8.95 71.98 0.64 0.11 16 2 C -0.02 -0.15 3.32 -11.54 -0.04 -0.19 16 3 C -0.15 -0.82 9.17 71.98 0.66 -0.16 16 4 C 0.04 0.55 5.92 41.40 0.25 0.80 16 5 C -0.20 -3.85 10.73 22.41 0.24 -3.61 16 6 C -0.03 -0.84 7.13 42.46 0.30 -0.54 16 7 C 0.61 17.00 7.82 86.75 0.68 17.68 16 8 O -0.56 -18.63 16.57 -3.94 -0.07 -18.69 16 9 N -0.70 -18.29 5.14 -438.92 -2.26 -20.54 16 10 C 0.12 3.35 3.52 46.40 0.16 3.51 16 11 H 0.12 3.15 7.54 -2.39 -0.02 3.13 16 12 C 0.04 1.07 7.42 72.69 0.54 1.60 16 13 O -0.37 -13.22 11.32 -148.98 -1.69 -14.90 16 14 C 0.08 3.12 1.66 -10.82 -0.02 3.11 16 15 C 0.13 5.37 8.20 83.40 0.68 6.06 16 16 N -0.64 -33.43 3.65 -739.07 -2.69 -36.13 16 17 C -0.32 -18.29 10.65 84.03 0.89 -17.39 16 18 H 0.08 4.39 7.90 -2.91 -0.02 4.37 16 19 C -0.09 -5.32 5.45 84.86 0.46 -4.86 16 20 N -0.96 -61.49 13.34 21.65 0.29 -61.20 16 21 Si 1.13 51.78 29.96 68.60 2.06 53.83 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 25 C 0.12 5.89 5.68 83.50 0.47 6.36 16 26 C -0.11 -3.46 6.11 31.40 0.19 -3.27 16 27 N -0.27 -5.61 11.92 -48.17 -0.57 -6.19 16 28 N -0.36 -4.95 6.64 -47.93 -0.32 -5.27 16 29 H 0.46 3.12 8.14 -220.00 -1.79 1.32 16 30 H 0.06 0.11 7.43 -2.39 -0.02 0.09 16 31 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.05 0.32 8.14 -2.38 -0.02 0.30 16 37 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 38 H 0.41 10.33 8.35 -92.71 -0.77 9.56 16 39 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.07 2.62 7.91 -2.39 -0.02 2.60 16 42 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.25 16.34 5.92 -92.71 -0.55 15.79 16 44 H 0.02 1.01 7.96 -2.38 -0.02 0.99 16 45 H 0.03 1.79 7.79 -2.39 -0.02 1.77 16 46 H 0.09 3.03 7.82 -2.39 -0.02 3.02 16 47 H 0.10 2.91 7.70 -2.38 -0.02 2.89 16 Total: -1.00 -77.42 387.38 -0.47 -77.89 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -1.34 Total: 21.99 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 6.12 Total: 9.21 kcal Atomic # 7 Polarization: -123.77 SS G_CDS: -5.56 Total: -129.33 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -1.75 Total: -33.59 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.06 Total: 53.83 kcal Total: -77.42 -0.47 -77.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053932375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.811 kcal (2) G-P(sol) polarization free energy of solvation -77.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds