Wall clock time and date at job start Tue Mar 31 2020 18:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46607 * 2 1 4 4 C 1.35364 * 126.38370 * 85.32532 * 3 2 1 5 5 C 1.41509 * 105.50149 * 180.08398 * 4 3 2 6 6 C 1.47709 * 126.51761 * 179.90185 * 5 4 3 7 7 O 1.21576 * 120.00126 * 359.70528 * 6 5 4 8 8 N 1.34776 * 120.00214 * 179.71083 * 6 5 4 9 9 C 1.46498 * 120.00239 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.76899 * 328.53342 * 9 8 6 11 11 C 1.55056 * 110.86715 * 92.28973 * 9 8 6 12 12 O 1.44608 * 103.66846 * 81.64347 * 11 9 8 13 13 C 1.42834 * 106.73394 * 39.08740 * 12 11 9 14 14 C 1.52650 * 115.96348 * 202.47035 * 13 12 11 15 15 N 1.47224 * 87.78301 * 218.41065 * 14 13 12 16 16 C 1.36935 * 135.96655 * 206.38126 * 15 14 13 17 17 H 1.07995 * 120.00083 * 6.48200 * 16 15 14 18 18 C 1.38817 * 119.99741 * 186.48533 * 16 15 14 19 19 N 1.31620 * 119.99762 * 6.40711 * 18 16 15 20 20 Si 1.86796 * 119.99659 * 186.41024 * 18 16 15 21 21 H 1.48494 * 109.47314 * 84.99017 * 20 18 16 22 22 H 1.48503 * 109.47018 * 204.98577 * 20 18 16 23 23 H 1.48499 * 109.47419 * 324.98234 * 20 18 16 24 24 C 1.47225 * 88.06172 * 26.63735 * 15 14 13 25 25 C 1.53318 * 108.32839 * 334.30342 * 13 12 11 26 26 N 1.31804 * 106.96210 * 359.63870 * 5 4 3 27 27 N 1.28466 * 110.07742 * 0.22454 * 26 5 4 28 28 C 1.46497 * 124.88992 * 180.02562 * 27 26 5 29 29 H 1.09003 * 109.47286 * 60.00264 * 1 2 3 30 30 H 1.09008 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47527 * 299.99478 * 1 2 3 32 32 H 1.08997 * 109.46787 * 240.00530 * 2 1 3 33 33 H 1.08996 * 109.46706 * 120.00021 * 2 1 3 34 34 H 1.08000 * 127.25102 * 359.96426 * 4 3 2 35 35 H 0.97002 * 119.99668 * 0.02562 * 8 6 5 36 36 H 1.09007 * 110.58732 * 200.18865 * 11 9 8 37 37 H 1.09001 * 110.59150 * 323.09538 * 11 9 8 38 38 H 1.09000 * 113.49520 * 103.68213 * 14 13 12 39 39 H 1.08995 * 113.56307 * 333.15030 * 14 13 12 40 40 H 0.97006 * 119.99259 * 180.02562 * 19 18 16 41 41 H 1.08999 * 113.49998 * 88.09597 * 24 15 14 42 42 H 1.08998 * 113.49567 * 218.64000 * 24 15 14 43 43 H 1.09001 * 110.56290 * 120.19416 * 25 13 12 44 44 H 1.09001 * 110.56534 * 243.04368 * 25 13 12 45 45 H 1.08996 * 109.47459 * 90.02167 * 28 27 26 46 46 H 1.09005 * 109.47461 * 210.02738 * 28 27 26 47 47 H 1.08999 * 109.46648 * 330.02502 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2161 2.2075 1.0861 5 6 2.6936 3.4410 0.5832 6 6 3.0445 4.6368 1.3762 7 8 2.9270 4.6199 2.5861 8 7 3.4949 5.7468 0.7584 9 6 3.8423 6.9330 1.5448 10 1 3.2181 7.0026 2.4356 11 6 5.3472 6.9265 1.9185 12 8 5.9961 7.4379 0.7316 13 6 5.1635 8.4821 0.2252 14 6 5.3306 8.8110 -1.2561 15 7 5.1590 10.2296 -0.9017 16 6 4.7161 11.3572 -1.5401 17 1 4.2881 11.2850 -2.5290 18 6 4.8175 12.5931 -0.9162 19 7 5.4516 12.7005 0.2321 20 14 4.0538 14.1036 -1.7064 21 1 2.6204 14.1891 -1.3279 22 1 4.7633 15.3205 -1.2362 23 1 4.1706 14.0023 -3.1833 24 6 5.6782 9.9063 0.4374 25 6 3.7253 8.2185 0.6863 26 7 2.7711 3.3181 -0.7268 27 7 2.3886 2.1446 -1.0830 28 6 2.3456 1.6608 -2.4651 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0346 1.9489 2.1189 35 1 3.5882 5.7605 -0.2070 36 1 5.5336 7.5816 2.7696 37 1 5.6846 5.9125 2.1330 38 1 4.5284 8.4191 -1.8814 39 1 6.3214 8.5770 -1.6453 40 1 5.5221 13.5641 0.6683 41 1 6.7640 9.9698 0.5096 42 1 5.1694 10.4386 1.2410 43 1 3.3581 9.0492 1.2890 44 1 3.0735 8.0485 -0.1707 45 1 3.2998 1.1987 -2.7182 46 1 1.5473 0.9258 -2.5682 47 1 2.1577 2.4980 -3.1373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054024907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:39 Heat of formation + Delta-G solvation = 60.378269 kcal Electronic energy + Delta-G solvation = -28720.483348 eV Core-core repulsion = 24714.366475 eV Total energy + Delta-G solvation = -4006.116874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.93673 -40.22090 -38.89016 -36.31600 -34.83116 -34.18782 -33.65434 -32.10276 -30.50624 -29.57438 -28.20938 -27.53801 -25.76779 -24.73458 -24.15561 -23.59954 -22.06741 -21.27330 -20.87670 -19.73470 -18.76440 -17.52609 -16.79390 -16.71436 -16.59699 -16.30061 -15.28027 -15.04582 -15.02400 -14.80887 -14.58719 -14.35796 -14.06569 -13.78047 -13.70134 -13.57648 -13.23833 -12.97172 -12.87990 -12.66210 -12.40459 -12.08029 -12.03012 -11.63359 -11.37257 -11.32966 -11.03854 -10.96898 -10.90139 -10.77935 -10.68305 -10.58607 -10.08286 -10.03858 -9.51918 -9.36901 -9.18054 -9.05632 -8.78901 -8.55682 -6.91211 -5.79793 -3.11461 1.42845 1.87460 2.17154 3.17131 3.38659 3.39113 3.43098 3.45519 4.03949 4.14978 4.26776 4.45814 4.51958 4.61994 4.65363 4.78255 4.80926 4.92666 5.03319 5.09107 5.11905 5.23171 5.27642 5.32994 5.37657 5.40674 5.44660 5.55772 5.64536 5.67774 5.74185 5.90135 5.97128 6.18453 6.21271 6.32171 6.43211 6.48613 6.58145 6.63175 6.67576 7.00678 7.17762 7.46265 7.48534 7.66366 7.77002 7.94024 8.23083 9.01278 9.67563 10.61642 11.38881 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.002336 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.489846 B =11981.240129 C =12585.951361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C 0.010 3.990 4 C -0.176 4.176 5 C -0.013 4.013 6 C 0.605 3.395 7 O -0.537 6.537 8 N -0.699 5.699 9 C 0.107 3.893 10 H 0.107 0.893 11 C 0.041 3.959 12 O -0.361 6.361 13 C 0.042 3.958 14 C 0.127 3.873 15 N -0.602 5.602 16 C -0.218 4.218 17 H 0.083 0.917 18 C -0.007 4.007 19 N -0.917 5.917 20 Si 0.914 3.086 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.155 3.845 25 C -0.115 4.115 26 N -0.258 5.258 27 N -0.280 5.280 28 C 0.084 3.916 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.161 0.839 35 H 0.409 0.591 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.255 0.745 41 H 0.036 0.964 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 -27.397 -1.414 28.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.114 4.114 4 C -0.203 4.203 5 C -0.173 4.173 6 C 0.389 3.611 7 O -0.413 6.413 8 N -0.350 5.350 9 C 0.002 3.998 10 H 0.125 0.875 11 C -0.037 4.037 12 O -0.279 6.279 13 C 0.002 3.998 14 C 0.001 3.999 15 N -0.330 5.330 16 C -0.345 4.345 17 H 0.100 0.900 18 C -0.204 4.204 19 N -0.564 5.564 20 Si 0.744 3.256 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.029 3.971 25 C -0.153 4.153 26 N -0.093 5.093 27 N -0.069 5.069 28 C -0.056 4.056 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.179 0.821 35 H 0.245 0.755 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.112 0.888 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.384 -26.544 -1.777 27.893 hybrid contribution -0.466 0.572 -0.226 0.771 sum -8.849 -25.972 -2.003 27.511 Atomic orbital electron populations 1.21779 0.94000 1.02205 1.02702 1.20106 0.96442 0.88746 1.03894 1.21386 1.06164 0.96994 0.86869 1.21486 1.06926 0.92328 0.99606 1.21880 1.08701 0.96843 0.89871 1.16893 0.76682 0.81177 0.86309 1.90784 1.54593 1.82769 1.13119 1.45820 1.65336 1.12427 1.11434 1.22675 0.97087 0.84356 0.95680 0.87472 1.23902 0.90797 0.99609 0.89420 1.88757 1.46300 1.51908 1.40925 1.23876 0.89254 0.89450 0.97252 1.22417 0.98581 0.86770 0.92156 1.45395 1.73701 1.03040 1.10830 1.18873 1.32634 0.83034 0.99939 0.89967 1.24850 1.00423 0.97307 0.97812 1.69862 1.45105 1.23925 1.17472 0.86112 0.78695 0.82342 0.78437 1.21407 1.21630 1.20664 1.22396 0.97003 0.87541 0.90141 1.22677 0.96625 0.95792 1.00199 1.73564 1.18075 1.02725 1.14981 1.45315 1.45499 1.08220 1.07853 1.22175 1.04190 1.01676 0.77602 0.92777 0.91714 0.91801 0.90729 0.89064 0.82143 0.75511 0.91075 0.89412 0.93831 0.94242 0.93523 0.94576 0.91933 0.88575 0.89830 0.89616 0.88763 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.89 37.16 0.37 -0.29 16 2 C -0.05 -0.26 6.00 -27.88 -0.17 -0.43 16 3 C 0.01 0.09 6.17 -82.21 -0.51 -0.42 16 4 C -0.18 -1.98 10.73 -39.36 -0.42 -2.41 16 5 C -0.01 -0.17 7.13 -82.76 -0.59 -0.76 16 6 C 0.60 9.16 7.82 -12.39 -0.10 9.07 16 7 O -0.54 -9.36 16.57 5.30 0.09 -9.28 16 8 N -0.70 -10.07 5.14 -52.70 -0.27 -10.34 16 9 C 0.11 1.61 3.51 -65.78 -0.23 1.38 16 10 H 0.11 1.59 7.54 -51.93 -0.39 1.20 16 11 C 0.04 0.64 7.42 38.24 0.28 0.93 16 12 O -0.36 -6.78 11.32 -35.23 -0.40 -7.18 16 13 C 0.04 0.84 1.66 -90.69 -0.15 0.68 16 14 C 0.13 2.74 8.20 -8.04 -0.07 2.67 16 15 N -0.60 -15.66 3.73 -184.63 -0.69 -16.35 16 16 C -0.22 -6.11 10.73 -15.06 -0.16 -6.28 16 17 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 19 N -0.92 -27.46 11.82 55.49 0.66 -26.80 16 20 Si 0.91 22.13 29.56 -169.99 -5.02 17.11 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.16 3.78 6.73 -7.91 -0.05 3.72 16 25 C -0.11 -1.94 6.11 -25.50 -0.16 -2.10 16 26 N -0.26 -3.19 11.67 33.42 0.39 -2.80 16 27 N -0.28 -2.60 3.70 -63.85 -0.24 -2.83 16 28 C 0.08 0.39 10.89 59.85 0.65 1.04 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.19 8.14 -51.92 -0.42 -0.23 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.24 7.43 -51.93 -0.39 -0.15 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.41 5.67 8.35 -40.82 -0.34 5.33 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.04 0.86 7.91 -51.93 -0.41 0.45 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 1.62 7.40 -51.93 -0.38 1.24 16 43 H 0.10 1.70 7.82 -51.93 -0.41 1.29 16 44 H 0.08 1.37 7.70 -51.93 -0.40 0.97 16 45 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.09 0.20 7.45 -51.93 -0.39 -0.19 16 47 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 390.55 15.07 5.89 5.89 Total: -1.00 -35.11 390.55 -8.30 -43.41 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.30 Total: 2.67 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -1.40 Total: 6.52 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.15 Total: -59.12 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.31 Total: -16.46 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.11 -8.30 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054024907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.784 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds