Wall clock time and date at job start Tue Mar 31 2020 18:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46607 * 2 1 4 4 C 1.35364 * 126.38370 * 85.32532 * 3 2 1 5 5 C 1.41509 * 105.50149 * 180.08398 * 4 3 2 6 6 C 1.47709 * 126.51761 * 179.90185 * 5 4 3 7 7 O 1.21576 * 120.00126 * 359.70528 * 6 5 4 8 8 N 1.34776 * 120.00214 * 179.71083 * 6 5 4 9 9 C 1.46498 * 120.00239 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.76899 * 328.53342 * 9 8 6 11 11 C 1.55056 * 110.86715 * 92.28973 * 9 8 6 12 12 O 1.44608 * 103.66846 * 81.64347 * 11 9 8 13 13 C 1.42834 * 106.73394 * 39.08740 * 12 11 9 14 14 C 1.52650 * 115.96348 * 202.47035 * 13 12 11 15 15 N 1.47224 * 87.78301 * 218.41065 * 14 13 12 16 16 C 1.36935 * 135.96655 * 206.38126 * 15 14 13 17 17 H 1.07995 * 120.00083 * 6.48200 * 16 15 14 18 18 C 1.38817 * 119.99741 * 186.48533 * 16 15 14 19 19 N 1.31620 * 119.99762 * 6.40711 * 18 16 15 20 20 Si 1.86796 * 119.99659 * 186.41024 * 18 16 15 21 21 H 1.48494 * 109.47314 * 84.99017 * 20 18 16 22 22 H 1.48503 * 109.47018 * 204.98577 * 20 18 16 23 23 H 1.48499 * 109.47419 * 324.98234 * 20 18 16 24 24 C 1.47225 * 88.06172 * 26.63735 * 15 14 13 25 25 C 1.53318 * 108.32839 * 334.30342 * 13 12 11 26 26 N 1.31804 * 106.96210 * 359.63870 * 5 4 3 27 27 N 1.28466 * 110.07742 * 0.22454 * 26 5 4 28 28 C 1.46497 * 124.88992 * 180.02562 * 27 26 5 29 29 H 1.09003 * 109.47286 * 60.00264 * 1 2 3 30 30 H 1.09008 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47527 * 299.99478 * 1 2 3 32 32 H 1.08997 * 109.46787 * 240.00530 * 2 1 3 33 33 H 1.08996 * 109.46706 * 120.00021 * 2 1 3 34 34 H 1.08000 * 127.25102 * 359.96426 * 4 3 2 35 35 H 0.97002 * 119.99668 * 0.02562 * 8 6 5 36 36 H 1.09007 * 110.58732 * 200.18865 * 11 9 8 37 37 H 1.09001 * 110.59150 * 323.09538 * 11 9 8 38 38 H 1.09000 * 113.49520 * 103.68213 * 14 13 12 39 39 H 1.08995 * 113.56307 * 333.15030 * 14 13 12 40 40 H 0.97006 * 119.99259 * 180.02562 * 19 18 16 41 41 H 1.08999 * 113.49998 * 88.09597 * 24 15 14 42 42 H 1.08998 * 113.49567 * 218.64000 * 24 15 14 43 43 H 1.09001 * 110.56290 * 120.19416 * 25 13 12 44 44 H 1.09001 * 110.56534 * 243.04368 * 25 13 12 45 45 H 1.08996 * 109.47459 * 90.02167 * 28 27 26 46 46 H 1.09005 * 109.47461 * 210.02738 * 28 27 26 47 47 H 1.08999 * 109.46648 * 330.02502 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2161 2.2075 1.0861 5 6 2.6936 3.4410 0.5832 6 6 3.0445 4.6368 1.3762 7 8 2.9270 4.6199 2.5861 8 7 3.4949 5.7468 0.7584 9 6 3.8423 6.9330 1.5448 10 1 3.2181 7.0026 2.4356 11 6 5.3472 6.9265 1.9185 12 8 5.9961 7.4379 0.7316 13 6 5.1635 8.4821 0.2252 14 6 5.3306 8.8110 -1.2561 15 7 5.1590 10.2296 -0.9017 16 6 4.7161 11.3572 -1.5401 17 1 4.2881 11.2850 -2.5290 18 6 4.8175 12.5931 -0.9162 19 7 5.4516 12.7005 0.2321 20 14 4.0538 14.1036 -1.7064 21 1 2.6204 14.1891 -1.3279 22 1 4.7633 15.3205 -1.2362 23 1 4.1706 14.0023 -3.1833 24 6 5.6782 9.9063 0.4374 25 6 3.7253 8.2185 0.6863 26 7 2.7711 3.3181 -0.7268 27 7 2.3886 2.1446 -1.0830 28 6 2.3456 1.6608 -2.4651 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0346 1.9489 2.1189 35 1 3.5882 5.7605 -0.2070 36 1 5.5336 7.5816 2.7696 37 1 5.6846 5.9125 2.1330 38 1 4.5284 8.4191 -1.8814 39 1 6.3214 8.5770 -1.6453 40 1 5.5221 13.5641 0.6683 41 1 6.7640 9.9698 0.5096 42 1 5.1694 10.4386 1.2410 43 1 3.3581 9.0492 1.2890 44 1 3.0735 8.0485 -0.1707 45 1 3.2998 1.1987 -2.7182 46 1 1.5473 0.9258 -2.5682 47 1 2.1577 2.4980 -3.1373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054024907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:38 Heat of formation + Delta-G solvation = 35.307353 kcal Electronic energy + Delta-G solvation = -28721.570505 eV Core-core repulsion = 24714.366475 eV Total energy + Delta-G solvation = -4007.204030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.70507 -41.70692 -40.22856 -37.98624 -35.62436 -35.23410 -34.31720 -34.18548 -31.78861 -30.28177 -29.93646 -28.31541 -27.47444 -26.57427 -24.80470 -24.38089 -23.95381 -22.34435 -21.86835 -20.73541 -20.43306 -18.77581 -18.34778 -17.76100 -17.47350 -17.32135 -17.04442 -16.61824 -16.11783 -16.04644 -15.64046 -15.54820 -15.39360 -15.11948 -14.69097 -14.41199 -14.23674 -14.16162 -13.83309 -13.69225 -13.40599 -13.22097 -13.04645 -12.86244 -12.77612 -12.59657 -12.52197 -12.48067 -12.35423 -12.21084 -12.04539 -11.94635 -11.70246 -11.49368 -11.26604 -10.87784 -10.57971 -10.19717 -9.93612 -9.91815 -9.00631 -7.95328 -5.29371 0.49147 1.10678 1.45934 1.49024 1.55396 1.56870 2.07811 2.31197 2.42881 2.86993 3.25387 3.30627 3.36064 3.57690 3.62244 3.63454 3.67226 3.91005 3.97243 4.17929 4.33981 4.35644 4.44124 4.46801 4.54269 4.60657 4.66556 4.67288 4.70099 4.73408 4.79069 4.81377 4.85811 4.90811 4.94578 5.08410 5.11541 5.16058 5.19483 5.32015 5.39087 5.41117 5.43162 5.82669 5.87614 6.06204 6.38409 6.85225 6.88157 7.10353 7.54564 8.54376 9.23765 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.002336 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.489846 B =11981.240129 C =12585.951361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C 0.025 3.975 4 C -0.200 4.200 5 C -0.043 4.043 6 C 0.606 3.394 7 O -0.567 6.567 8 N -0.694 5.694 9 C 0.120 3.880 10 H 0.114 0.886 11 C 0.038 3.962 12 O -0.371 6.371 13 C 0.071 3.929 14 C 0.127 3.873 15 N -0.627 5.627 16 C -0.229 4.229 17 H 0.092 0.908 18 C -0.067 4.067 19 N -0.954 5.954 20 Si 0.985 3.015 21 H -0.281 1.281 22 H -0.296 1.296 23 H -0.267 1.267 24 C 0.152 3.848 25 C -0.107 4.107 26 N -0.275 5.275 27 N -0.275 5.275 28 C 0.071 3.929 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.161 0.839 35 H 0.413 0.587 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.038 0.962 40 H 0.250 0.750 41 H 0.010 0.990 42 H 0.038 0.962 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.125 0.875 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.224 -29.945 -3.141 31.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.099 4.099 4 C -0.228 4.228 5 C -0.202 4.202 6 C 0.392 3.608 7 O -0.445 6.445 8 N -0.345 5.345 9 C 0.015 3.985 10 H 0.131 0.869 11 C -0.039 4.039 12 O -0.289 6.289 13 C 0.030 3.970 14 C 0.001 3.999 15 N -0.354 5.354 16 C -0.357 4.357 17 H 0.109 0.891 18 C -0.260 4.260 19 N -0.602 5.602 20 Si 0.812 3.188 21 H -0.207 1.207 22 H -0.223 1.223 23 H -0.192 1.192 24 C 0.025 3.975 25 C -0.145 4.145 26 N -0.113 5.113 27 N -0.064 5.064 28 C -0.068 4.068 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.179 0.821 35 H 0.249 0.751 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.057 0.943 43 H 0.106 0.894 44 H 0.112 0.888 45 H 0.121 0.879 46 H 0.143 0.857 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.867 -29.128 -3.546 30.958 hybrid contribution 0.028 1.218 0.252 1.244 sum -9.840 -27.910 -3.293 29.776 Atomic orbital electron populations 1.21766 0.93512 1.03247 1.01966 1.20288 0.96655 0.86299 1.05682 1.21907 1.04057 0.98133 0.85852 1.21675 1.08154 0.92320 1.00657 1.21727 1.10900 0.96944 0.90589 1.17147 0.75930 0.81630 0.86121 1.90754 1.55936 1.83387 1.14377 1.45747 1.65173 1.12082 1.11496 1.22490 0.96695 0.83839 0.95506 0.86852 1.24084 0.91045 1.00235 0.88554 1.88745 1.46790 1.51193 1.42125 1.23413 0.90561 0.87218 0.95853 1.22517 0.99206 0.84428 0.93701 1.45690 1.73674 1.04338 1.11734 1.19319 1.32045 0.83981 1.00316 0.89066 1.25755 1.01325 1.00417 0.98516 1.70055 1.46871 1.24199 1.19097 0.85007 0.77649 0.78010 0.78113 1.20740 1.22281 1.19156 1.22336 0.95248 0.90692 0.89196 1.22573 0.94694 0.96468 1.00732 1.73493 1.18905 1.04466 1.14393 1.45796 1.43690 1.07311 1.09566 1.22628 1.06387 1.02551 0.75195 0.92831 0.89777 0.93281 0.88083 0.88157 0.82110 0.75069 0.90217 0.88311 0.91375 0.94453 0.94116 0.97233 0.94335 0.89353 0.88787 0.87937 0.85669 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 71.98 0.71 -0.18 16 2 C -0.05 -0.33 6.00 29.85 0.18 -0.15 16 3 C 0.03 0.39 6.17 41.40 0.26 0.65 16 4 C -0.20 -4.41 10.73 22.41 0.24 -4.17 16 5 C -0.04 -1.16 7.13 42.46 0.30 -0.85 16 6 C 0.61 18.29 7.82 86.75 0.68 18.97 16 7 O -0.57 -19.89 16.57 -3.95 -0.07 -19.96 16 8 N -0.69 -19.53 5.14 -438.93 -2.26 -21.79 16 9 C 0.12 3.53 3.51 46.39 0.16 3.69 16 10 H 0.11 3.28 7.54 -2.39 -0.02 3.26 16 11 C 0.04 1.18 7.42 72.69 0.54 1.72 16 12 O -0.37 -13.77 11.32 -148.98 -1.69 -15.46 16 13 C 0.07 2.78 1.66 -10.83 -0.02 2.76 16 14 C 0.13 5.40 8.20 83.40 0.68 6.08 16 15 N -0.63 -33.02 3.73 -739.17 -2.75 -35.77 16 16 C -0.23 -12.92 10.73 84.04 0.90 -12.02 16 17 H 0.09 4.84 7.84 -2.91 -0.02 4.82 16 18 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 19 N -0.95 -58.73 11.82 21.65 0.26 -58.48 16 20 Si 0.98 45.81 29.56 68.60 2.03 47.83 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 C 0.15 7.63 6.73 83.48 0.56 8.20 16 25 C -0.11 -3.55 6.11 31.39 0.19 -3.36 16 26 N -0.28 -6.50 11.67 -48.17 -0.56 -7.06 16 27 N -0.27 -4.49 3.70 -355.93 -1.32 -5.81 16 28 C 0.07 0.43 10.89 127.77 1.39 1.82 16 29 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.08 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.17 7.43 -2.39 -0.02 0.16 16 33 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 35 H 0.41 11.04 8.35 -92.71 -0.77 10.27 16 36 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 37 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.07 2.57 7.91 -2.39 -0.02 2.55 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 41 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.04 2.09 7.40 -2.39 -0.02 2.07 16 43 H 0.09 3.13 7.82 -2.39 -0.02 3.11 16 44 H 0.09 2.96 7.70 -2.39 -0.02 2.94 16 45 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.13 -0.01 7.45 -2.38 -0.02 -0.03 16 47 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -77.73 390.55 1.10 -76.63 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.21 Total: 20.07 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 7.25 Total: 19.78 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -6.63 Total: -128.91 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -1.75 Total: -35.41 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -77.73 1.10 -76.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054024907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.940 kcal (2) G-P(sol) polarization free energy of solvation -77.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds