Wall clock time and date at job start Tue Mar 31 2020 17:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46595 * 2 1 4 4 N 1.32165 * 120.53724 * 263.36201 * 3 2 1 5 5 C 1.31856 * 120.96493 * 179.71295 * 4 3 2 6 6 N 1.31880 * 122.10096 * 0.58607 * 5 4 3 7 7 C 1.32141 * 120.96343 * 359.70934 * 6 5 4 8 8 C 1.39931 * 120.53705 * 83.64775 * 3 2 1 9 9 C 1.47826 * 120.94023 * 359.97282 * 8 3 2 10 10 O 1.21556 * 120.00016 * 353.82605 * 9 8 3 11 11 N 1.34777 * 120.00039 * 173.82383 * 9 8 3 12 12 C 1.46499 * 120.00142 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47321 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.46492 * 305.00430 * 13 12 11 15 15 C 1.54805 * 109.46977 * 185.00978 * 13 12 11 16 16 N 1.45129 * 109.53664 * 172.10843 * 15 13 12 17 17 C 1.36928 * 118.75848 * 269.28968 * 16 15 13 18 18 H 1.08001 * 120.00123 * 23.69215 * 17 16 15 19 19 C 1.38806 * 120.00002 * 203.69439 * 17 16 15 20 20 N 1.31622 * 120.00328 * 19.37175 * 19 17 16 21 21 Si 1.86800 * 120.00204 * 199.37450 * 19 17 16 22 22 H 1.48499 * 109.47317 * 89.99715 * 21 19 17 23 23 H 1.48501 * 109.47295 * 209.99833 * 21 19 17 24 24 H 1.48504 * 109.46886 * 329.99915 * 21 19 17 25 25 C 1.47503 * 122.48151 * 89.29120 * 16 15 13 26 26 C 1.53579 * 111.02768 * 318.36944 * 25 16 15 27 27 C 1.51531 * 109.58236 * 320.02696 * 26 25 16 28 28 O 1.38011 * 109.47014 * 64.99948 * 13 12 11 29 29 H 1.08999 * 109.46964 * 299.99527 * 1 2 3 30 30 H 1.09001 * 109.47331 * 59.99898 * 1 2 3 31 31 H 1.09001 * 109.46704 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46964 * 240.00473 * 2 1 3 33 33 H 1.08999 * 109.47764 * 119.99813 * 2 1 3 34 34 H 1.08003 * 118.94860 * 180.27161 * 5 4 3 35 35 H 1.07997 * 120.54065 * 180.02562 * 7 6 5 36 36 H 0.97003 * 120.00082 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47140 * 300.00010 * 12 11 9 38 38 H 1.09002 * 109.46896 * 59.99967 * 12 11 9 39 39 H 1.08994 * 109.45848 * 292.12997 * 15 13 12 40 40 H 1.09003 * 109.46281 * 52.09000 * 15 13 12 41 41 H 0.96994 * 120.00362 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.16802 * 197.97738 * 25 16 15 43 43 H 1.08997 * 109.12692 * 78.74246 * 25 16 15 44 44 H 1.09005 * 109.45251 * 199.98644 * 26 25 16 45 45 H 1.08999 * 109.45049 * 80.06149 * 26 25 16 46 46 H 1.08999 * 109.58644 * 331.61037 * 27 26 25 47 47 H 1.09006 * 109.58339 * 211.18278 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.3801 2.0102 -1.1307 5 6 2.8152 3.2548 -1.1411 6 7 2.9356 3.9645 -0.0361 7 6 2.6156 3.4521 1.1392 8 6 2.1434 2.1357 1.1978 9 6 1.7721 1.5182 2.4886 10 8 1.2589 0.4165 2.5101 11 7 2.0028 2.1767 3.6417 12 6 1.6353 1.5646 4.9210 13 6 2.0007 2.5136 6.0641 14 1 3.0565 2.7760 5.9950 15 6 1.7298 1.8169 7.4197 16 7 2.2471 2.6376 8.4991 17 6 3.5342 2.4368 8.9208 18 1 4.2570 1.9889 8.2549 19 6 3.9102 2.8089 10.2041 20 7 2.9942 2.9909 11.1316 21 14 5.7162 3.0516 10.6149 22 1 6.0960 4.4647 10.3616 23 1 5.9466 2.7259 12.0454 24 1 6.5419 2.1571 9.7643 25 6 1.4385 3.6799 9.1592 26 6 0.6174 4.4733 8.1320 27 6 1.4551 4.7200 6.8936 28 8 1.2354 3.6585 5.9740 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 3.0865 3.7059 -2.0842 35 1 2.7165 4.0395 2.0398 36 1 2.4121 3.0560 3.6246 37 1 0.5624 1.3730 4.9372 38 1 2.1741 0.6249 5.0421 39 1 0.6563 1.6804 7.5497 40 1 2.2236 0.8452 7.4338 41 1 3.2569 3.2505 12.0285 42 1 2.1004 4.3624 9.6922 43 1 0.7614 3.2088 9.8717 44 1 0.3194 5.4282 8.5650 45 1 -0.2722 3.9046 7.8612 46 1 2.5097 4.7545 7.1668 47 1 1.1625 5.6656 6.4371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073893174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:11 Heat of formation + Delta-G solvation = -7.141551 kcal Electronic energy + Delta-G solvation = -29232.632604 eV Core-core repulsion = 25223.587851 eV Total energy + Delta-G solvation = -4009.044753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.62880 -39.63611 -38.80227 -35.78106 -35.19170 -34.53828 -33.31938 -32.28347 -31.58510 -31.09202 -28.63289 -26.17159 -25.54330 -25.25462 -24.88982 -22.86554 -22.10971 -21.10898 -20.74401 -19.63677 -18.19101 -17.96651 -17.17577 -17.00321 -16.24317 -15.89203 -15.61713 -15.30750 -15.04315 -14.60373 -14.50252 -14.39611 -14.15512 -13.88468 -13.77058 -13.36121 -13.07061 -12.82842 -12.72519 -12.36798 -12.17855 -11.94025 -11.75309 -11.47425 -11.28441 -11.19065 -11.03635 -10.94156 -10.90034 -10.70350 -10.28738 -9.97047 -9.93749 -9.85145 -9.83566 -9.75916 -9.61454 -9.07483 -8.90905 -8.47633 -6.86696 -5.90987 -3.32334 0.13082 0.67489 2.65954 2.96323 3.29760 3.37803 3.38564 3.47299 3.65973 3.71405 4.00454 4.07073 4.38570 4.42184 4.59170 4.89845 5.04050 5.09935 5.20174 5.25259 5.28510 5.44789 5.51037 5.52509 5.62298 5.78209 5.80411 5.86813 5.88916 5.93252 6.02849 6.08256 6.11596 6.19835 6.26967 6.39969 6.47779 6.56293 6.63623 6.66977 6.74166 7.27570 7.34714 7.55131 7.65972 7.71018 8.02242 8.12078 8.30966 9.09677 9.75493 10.20493 11.16831 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.002607 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.362530 B =10736.414908 C =10911.715812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C 0.237 3.763 4 N -0.525 5.525 5 C 0.315 3.685 6 N -0.527 5.527 7 C 0.186 3.814 8 C -0.240 4.240 9 C 0.564 3.436 10 O -0.525 6.525 11 N -0.711 5.711 12 C 0.133 3.867 13 C 0.065 3.935 14 H 0.053 0.947 15 C 0.128 3.872 16 N -0.591 5.591 17 C -0.268 4.268 18 H 0.068 0.932 19 C 0.007 3.993 20 N -0.899 5.899 21 Si 0.900 3.100 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.175 3.825 26 C -0.176 4.176 27 C 0.088 3.912 28 O -0.396 6.396 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.201 0.799 35 H 0.173 0.827 36 H 0.401 0.599 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.255 0.745 42 H 0.076 0.924 43 H 0.027 0.973 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 0.750 -19.843 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.120 4.120 3 C 0.091 3.909 4 N -0.239 5.239 5 C 0.028 3.972 6 N -0.241 5.241 7 C 0.019 3.981 8 C -0.248 4.248 9 C 0.349 3.651 10 O -0.403 6.403 11 N -0.361 5.361 12 C 0.010 3.990 13 C 0.003 3.997 14 H 0.071 0.929 15 C -0.001 4.001 16 N -0.312 5.312 17 C -0.397 4.397 18 H 0.086 0.914 19 C -0.192 4.192 20 N -0.543 5.543 21 Si 0.730 3.270 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C 0.050 3.950 26 C -0.215 4.215 27 C 0.012 3.988 28 O -0.316 6.316 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.217 0.783 35 H 0.190 0.810 36 H 0.236 0.764 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.353 0.430 -20.574 20.850 hybrid contribution 1.207 0.479 1.405 1.913 sum -2.147 0.909 -19.169 19.310 Atomic orbital electron populations 1.21568 0.93056 1.02602 1.01820 1.20836 0.97519 0.88851 1.04826 1.22051 0.85786 0.96676 0.86424 1.68420 1.13674 1.12164 1.29596 1.25236 0.88446 0.86374 0.97182 1.68463 1.17956 1.38493 0.99152 1.23539 0.86899 0.90998 0.96670 1.21689 1.08628 0.97866 0.96623 1.17714 0.79120 0.85277 0.83003 1.90746 1.43221 1.19422 1.86928 1.45909 1.62648 1.21630 1.05962 1.21508 1.01616 0.95814 0.80082 1.22652 0.94487 0.86517 0.96057 0.92946 1.21389 0.97632 0.93879 0.87198 1.43859 1.12441 1.37189 1.37741 1.19225 0.85957 1.38944 0.95596 0.91420 1.24971 0.97511 1.01552 0.95165 1.70103 1.31883 1.50345 1.01973 0.86332 0.85110 0.78187 0.77408 1.21385 1.21712 1.20385 1.21009 0.93124 0.89928 0.90897 1.22758 1.00018 1.00718 0.98027 1.22024 1.00320 0.87467 0.89011 1.86065 1.62693 1.26047 1.56775 0.91668 0.93347 0.91571 0.90243 0.86995 0.78267 0.81045 0.76399 0.90539 0.89808 0.93743 0.92568 0.93511 0.90585 0.95466 0.92052 0.92343 0.91976 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 9.50 37.16 0.35 -0.97 16 2 C -0.08 -0.86 5.49 -27.88 -0.15 -1.01 16 3 C 0.24 2.67 6.12 -81.81 -0.50 2.17 16 4 N -0.52 -5.66 10.36 -10.48 -0.11 -5.77 16 5 C 0.31 2.92 12.27 -92.03 -1.13 1.79 16 6 N -0.53 -5.40 10.42 -14.24 -0.15 -5.55 16 7 C 0.19 1.83 10.80 -16.77 -0.18 1.65 16 8 C -0.24 -2.68 5.91 -104.69 -0.62 -3.29 16 9 C 0.56 7.01 7.72 -12.34 -0.10 6.91 16 10 O -0.53 -7.56 12.00 5.32 0.06 -7.49 16 11 N -0.71 -8.42 5.45 -61.25 -0.33 -8.75 16 12 C 0.13 1.81 5.34 -4.04 -0.02 1.79 16 13 C 0.06 1.04 2.68 -25.78 -0.07 0.97 16 14 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 15 C 0.13 2.48 5.12 -3.83 -0.02 2.46 16 16 N -0.59 -13.71 2.23 -172.02 -0.38 -14.10 16 17 C -0.27 -6.88 9.47 -15.07 -0.14 -7.02 16 18 H 0.07 1.71 7.90 -52.49 -0.41 1.30 16 19 C 0.01 0.19 4.80 -17.43 -0.08 0.11 16 20 N -0.90 -25.03 11.09 55.49 0.62 -24.41 16 21 Si 0.90 20.81 29.60 -169.99 -5.03 15.78 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.18 3.95 4.73 -3.19 -0.02 3.94 16 26 C -0.18 -3.14 5.78 -27.17 -0.16 -3.30 16 27 C 0.09 1.45 6.37 36.41 0.23 1.68 16 28 O -0.40 -6.45 9.38 -26.52 -0.25 -6.70 16 29 H 0.06 0.76 6.85 -51.93 -0.36 0.40 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.11 1.29 5.96 -51.93 -0.31 0.98 16 34 H 0.20 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.17 1.28 6.58 -52.49 -0.35 0.93 16 36 H 0.40 4.09 6.63 -40.82 -0.27 3.82 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 40 H 0.06 1.09 7.98 -51.93 -0.41 0.67 16 41 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.08 1.91 6.31 -51.93 -0.33 1.58 16 43 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 1.04 8.01 -51.93 -0.42 0.62 16 46 H 0.06 1.15 7.40 -51.93 -0.38 0.77 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 375.28 15.07 5.66 5.66 Total: -1.00 -30.03 375.28 -9.54 -39.57 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.02 Total: 3.89 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -2.60 Total: 7.89 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.36 Total: -58.58 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.19 Total: -14.19 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.03 -9.54 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073893174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.424 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds