Wall clock time and date at job start Tue Mar 31 2020 17:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46595 * 2 1 4 4 N 1.32165 * 120.53724 * 263.36201 * 3 2 1 5 5 C 1.31856 * 120.96493 * 179.71295 * 4 3 2 6 6 N 1.31880 * 122.10096 * 0.58607 * 5 4 3 7 7 C 1.32141 * 120.96343 * 359.70934 * 6 5 4 8 8 C 1.39931 * 120.53705 * 83.64775 * 3 2 1 9 9 C 1.47826 * 120.94023 * 359.97282 * 8 3 2 10 10 O 1.21556 * 120.00016 * 353.82605 * 9 8 3 11 11 N 1.34777 * 120.00039 * 173.82383 * 9 8 3 12 12 C 1.46499 * 120.00142 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47321 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.46492 * 305.00430 * 13 12 11 15 15 C 1.54805 * 109.46977 * 185.00978 * 13 12 11 16 16 N 1.45129 * 109.53664 * 172.10843 * 15 13 12 17 17 C 1.36928 * 118.75848 * 269.28968 * 16 15 13 18 18 H 1.08001 * 120.00123 * 23.69215 * 17 16 15 19 19 C 1.38806 * 120.00002 * 203.69439 * 17 16 15 20 20 N 1.31622 * 120.00328 * 19.37175 * 19 17 16 21 21 Si 1.86800 * 120.00204 * 199.37450 * 19 17 16 22 22 H 1.48499 * 109.47317 * 89.99715 * 21 19 17 23 23 H 1.48501 * 109.47295 * 209.99833 * 21 19 17 24 24 H 1.48504 * 109.46886 * 329.99915 * 21 19 17 25 25 C 1.47503 * 122.48151 * 89.29120 * 16 15 13 26 26 C 1.53579 * 111.02768 * 318.36944 * 25 16 15 27 27 C 1.51531 * 109.58236 * 320.02696 * 26 25 16 28 28 O 1.38011 * 109.47014 * 64.99948 * 13 12 11 29 29 H 1.08999 * 109.46964 * 299.99527 * 1 2 3 30 30 H 1.09001 * 109.47331 * 59.99898 * 1 2 3 31 31 H 1.09001 * 109.46704 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46964 * 240.00473 * 2 1 3 33 33 H 1.08999 * 109.47764 * 119.99813 * 2 1 3 34 34 H 1.08003 * 118.94860 * 180.27161 * 5 4 3 35 35 H 1.07997 * 120.54065 * 180.02562 * 7 6 5 36 36 H 0.97003 * 120.00082 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47140 * 300.00010 * 12 11 9 38 38 H 1.09002 * 109.46896 * 59.99967 * 12 11 9 39 39 H 1.08994 * 109.45848 * 292.12997 * 15 13 12 40 40 H 1.09003 * 109.46281 * 52.09000 * 15 13 12 41 41 H 0.96994 * 120.00362 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.16802 * 197.97738 * 25 16 15 43 43 H 1.08997 * 109.12692 * 78.74246 * 25 16 15 44 44 H 1.09005 * 109.45251 * 199.98644 * 26 25 16 45 45 H 1.08999 * 109.45049 * 80.06149 * 26 25 16 46 46 H 1.08999 * 109.58644 * 331.61037 * 27 26 25 47 47 H 1.09006 * 109.58339 * 211.18278 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.3801 2.0102 -1.1307 5 6 2.8152 3.2548 -1.1411 6 7 2.9356 3.9645 -0.0361 7 6 2.6156 3.4521 1.1392 8 6 2.1434 2.1357 1.1978 9 6 1.7721 1.5182 2.4886 10 8 1.2589 0.4165 2.5101 11 7 2.0028 2.1767 3.6417 12 6 1.6353 1.5646 4.9210 13 6 2.0007 2.5136 6.0641 14 1 3.0565 2.7760 5.9950 15 6 1.7298 1.8169 7.4197 16 7 2.2471 2.6376 8.4991 17 6 3.5342 2.4368 8.9208 18 1 4.2570 1.9889 8.2549 19 6 3.9102 2.8089 10.2041 20 7 2.9942 2.9909 11.1316 21 14 5.7162 3.0516 10.6149 22 1 6.0960 4.4647 10.3616 23 1 5.9466 2.7259 12.0454 24 1 6.5419 2.1571 9.7643 25 6 1.4385 3.6799 9.1592 26 6 0.6174 4.4733 8.1320 27 6 1.4551 4.7200 6.8936 28 8 1.2354 3.6585 5.9740 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 3.0865 3.7059 -2.0842 35 1 2.7165 4.0395 2.0398 36 1 2.4121 3.0560 3.6246 37 1 0.5624 1.3730 4.9372 38 1 2.1741 0.6249 5.0421 39 1 0.6563 1.6804 7.5497 40 1 2.2236 0.8452 7.4338 41 1 3.2569 3.2505 12.0285 42 1 2.1004 4.3624 9.6922 43 1 0.7614 3.2088 9.8717 44 1 0.3194 5.4282 8.5650 45 1 -0.2722 3.9046 7.8612 46 1 2.5097 4.7545 7.1668 47 1 1.1625 5.6656 6.4371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073893174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:10 Heat of formation + Delta-G solvation = -25.465049 kcal Electronic energy + Delta-G solvation = -29233.427170 eV Core-core repulsion = 25223.587851 eV Total energy + Delta-G solvation = -4009.839319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.43035 -40.79004 -40.03705 -37.06782 -36.50404 -35.57016 -34.20066 -33.58437 -33.39717 -32.02256 -30.05265 -27.51041 -27.11095 -26.13316 -26.03038 -24.30842 -22.93429 -22.28705 -21.94646 -21.30842 -19.07336 -18.94238 -18.74266 -17.89221 -17.60389 -17.14232 -16.84949 -16.53312 -16.37491 -16.00610 -15.57282 -15.51140 -15.14151 -15.06830 -14.88464 -14.72053 -14.30393 -14.21567 -13.76699 -13.64035 -13.50351 -13.13895 -12.98516 -12.78195 -12.75976 -12.54777 -12.48197 -12.38874 -12.07830 -11.98758 -11.76588 -11.69883 -11.46989 -11.30971 -10.84233 -10.77047 -10.52835 -10.39147 -10.25862 -10.08341 -8.76532 -7.90471 -5.33610 -0.65386 -0.10691 1.45640 1.47853 1.55642 1.74832 1.97685 2.49627 2.67776 2.76787 2.92017 3.04246 3.23897 3.25479 3.54032 3.60953 3.74967 4.06025 4.15066 4.22782 4.23117 4.27192 4.37318 4.40749 4.48932 4.54444 4.61065 4.67930 4.75546 4.76056 4.85778 4.92225 5.02949 5.10310 5.15653 5.19659 5.23327 5.24610 5.29620 5.43302 5.47230 5.61058 5.75020 5.79137 6.33854 6.41396 6.75056 6.90668 7.07925 7.13455 7.86926 8.27091 9.15664 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.002607 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.362530 B =10736.414908 C =10911.715812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C 0.229 3.771 4 N -0.536 5.536 5 C 0.317 3.683 6 N -0.538 5.538 7 C 0.192 3.808 8 C -0.253 4.253 9 C 0.567 3.433 10 O -0.548 6.548 11 N -0.704 5.704 12 C 0.145 3.855 13 C 0.084 3.916 14 H 0.047 0.953 15 C 0.123 3.877 16 N -0.606 5.606 17 C -0.268 4.268 18 H 0.070 0.930 19 C -0.046 4.046 20 N -0.934 5.934 21 Si 0.961 3.039 22 H -0.284 1.284 23 H -0.299 1.299 24 H -0.269 1.269 25 C 0.183 3.817 26 C -0.164 4.164 27 C 0.091 3.909 28 O -0.391 6.391 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.234 0.766 35 H 0.194 0.806 36 H 0.411 0.589 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.249 0.751 42 H 0.046 0.954 43 H -0.008 1.008 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.041 0.959 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.703 1.780 -22.280 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 C 0.082 3.918 4 N -0.251 5.251 5 C 0.031 3.969 6 N -0.251 5.251 7 C 0.025 3.975 8 C -0.260 4.260 9 C 0.353 3.647 10 O -0.427 6.427 11 N -0.356 5.356 12 C 0.021 3.979 13 C 0.022 3.978 14 H 0.065 0.935 15 C -0.005 4.005 16 N -0.328 5.328 17 C -0.398 4.398 18 H 0.088 0.912 19 C -0.241 4.241 20 N -0.579 5.579 21 Si 0.789 3.211 22 H -0.211 1.211 23 H -0.226 1.226 24 H -0.194 1.194 25 C 0.058 3.942 26 C -0.203 4.203 27 C 0.015 3.985 28 O -0.310 6.310 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.250 0.750 35 H 0.211 0.789 36 H 0.247 0.753 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.010 0.990 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.936 1.466 -23.062 23.295 hybrid contribution 1.041 0.128 2.106 2.353 sum -1.895 1.593 -20.956 21.102 Atomic orbital electron populations 1.21506 0.92828 1.03049 1.01042 1.20800 0.97651 0.88730 1.04658 1.22207 0.85752 0.97027 0.86812 1.68486 1.14356 1.12929 1.29285 1.25957 0.86894 0.85840 0.98245 1.68568 1.18444 1.38669 0.99465 1.23890 0.85611 0.90522 0.97490 1.21560 1.10115 0.98593 0.95772 1.17861 0.78530 0.84921 0.83393 1.90742 1.44246 1.20472 1.87268 1.45730 1.62654 1.22015 1.05169 1.21250 1.01421 0.95152 0.80086 1.22317 0.94232 0.86408 0.94797 0.93503 1.21569 0.97364 0.93753 0.87845 1.44064 1.12002 1.38116 1.38577 1.19524 0.87147 1.37681 0.95436 0.91200 1.25670 1.00947 1.02261 0.95261 1.70255 1.33516 1.52138 1.02029 0.85367 0.81004 0.78129 0.76563 1.21072 1.22583 1.19378 1.20789 0.92186 0.89485 0.91709 1.22613 0.99291 1.00903 0.97470 1.22072 0.98757 0.88928 0.88709 1.86099 1.62586 1.25884 1.56425 0.93537 0.92843 0.90570 0.89169 0.88300 0.74960 0.78893 0.75258 0.90867 0.89634 0.93794 0.92925 0.94150 0.93568 0.98975 0.89828 0.92024 0.94077 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.50 71.98 0.68 -1.74 16 2 C -0.08 -1.61 5.49 29.85 0.16 -1.44 16 3 C 0.23 4.84 6.12 42.92 0.26 5.11 16 4 N -0.54 -10.53 10.36 -187.06 -1.94 -12.47 16 5 C 0.32 5.07 12.27 180.84 2.22 7.29 16 6 N -0.54 -9.64 10.42 -198.96 -2.07 -11.72 16 7 C 0.19 3.33 10.80 85.07 0.92 4.25 16 8 C -0.25 -5.23 5.91 -19.91 -0.12 -5.35 16 9 C 0.57 13.36 7.72 86.78 0.67 14.03 16 10 O -0.55 -15.43 12.00 -3.89 -0.05 -15.47 16 11 N -0.70 -15.38 5.45 -465.99 -2.54 -17.92 16 12 C 0.14 3.73 5.34 86.38 0.46 4.19 16 13 C 0.08 2.58 2.68 31.21 0.08 2.66 16 14 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 15 C 0.12 4.71 5.12 87.25 0.45 5.16 16 16 N -0.61 -28.40 2.23 -698.16 -1.56 -29.96 16 17 C -0.27 -13.87 9.47 84.03 0.80 -13.07 16 18 H 0.07 3.52 7.90 -2.91 -0.02 3.50 16 19 C -0.05 -2.45 4.80 84.86 0.41 -2.04 16 20 N -0.93 -53.60 11.09 21.65 0.24 -53.36 16 21 Si 0.96 43.26 29.60 68.60 2.03 45.29 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 C 0.18 8.45 4.73 86.38 0.41 8.86 16 26 C -0.16 -5.64 5.78 30.31 0.18 -5.46 16 27 C 0.09 2.80 6.37 71.50 0.46 3.25 16 28 O -0.39 -11.79 9.38 -117.81 -1.11 -12.90 16 29 H 0.05 1.06 6.85 -2.39 -0.02 1.05 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.10 2.25 5.96 -2.39 -0.01 2.24 16 34 H 0.23 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.19 2.31 6.58 -2.91 -0.02 2.29 16 36 H 0.41 7.35 6.63 -92.71 -0.61 6.73 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.04 1.68 8.11 -2.39 -0.02 1.66 16 40 H 0.05 2.03 7.98 -2.39 -0.02 2.02 16 41 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 42 H 0.05 2.39 6.31 -2.39 -0.02 2.37 16 43 H -0.01 -0.41 8.07 -2.39 -0.02 -0.43 16 44 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 45 H 0.06 2.10 8.01 -2.39 -0.02 2.08 16 46 H 0.04 1.46 7.40 -2.39 -0.02 1.44 16 47 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -65.60 375.28 1.42 -64.18 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.37 Total: 18.63 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 8.03 Total: 25.70 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -7.87 Total: -125.43 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -1.15 Total: -28.37 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -65.60 1.42 -64.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073893174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.718 kcal (2) G-P(sol) polarization free energy of solvation -65.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds