Wall clock time and date at job start Tue Mar 31 2020 18:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47744 * 2 1 4 4 C 1.35369 * 126.38278 * 275.26433 * 3 2 1 5 5 C 1.41511 * 105.50023 * 180.15366 * 4 3 2 6 6 C 1.47710 * 126.51535 * 179.90645 * 5 4 3 7 7 O 1.21568 * 120.00152 * 4.17628 * 6 5 4 8 8 N 1.34781 * 119.99554 * 184.18607 * 6 5 4 9 9 C 1.46974 * 120.72309 * 355.12467 * 8 6 5 10 10 C 1.53164 * 108.44567 * 125.48428 * 9 8 6 11 11 C 1.52504 * 109.79731 * 54.51732 * 10 9 8 12 12 H 1.08993 * 108.93382 * 180.33891 * 11 10 9 13 13 O 1.42697 * 110.62574 * 61.29913 * 11 10 9 14 14 C 1.43072 * 113.86829 * 174.64162 * 13 11 10 15 15 C 1.52807 * 109.52087 * 61.51343 * 14 13 11 16 16 N 1.47172 * 108.92999 * 308.66249 * 15 14 13 17 17 C 1.36935 * 121.22317 * 230.90570 * 16 15 14 18 18 H 1.08000 * 119.99869 * 154.10861 * 17 16 15 19 19 C 1.38813 * 120.00052 * 334.10907 * 17 16 15 20 20 N 1.31621 * 119.99674 * 333.15341 * 19 17 16 21 21 Si 1.86799 * 120.00029 * 153.14651 * 19 17 16 22 22 H 1.48498 * 109.47157 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47314 * 300.00096 * 21 19 17 24 24 H 1.48502 * 109.46956 * 60.00602 * 21 19 17 25 25 C 1.47596 * 117.54981 * 50.62565 * 16 15 14 26 26 H 1.09000 * 110.30834 * 186.93857 * 25 16 15 27 27 C 1.46792 * 120.71868 * 175.15064 * 8 6 5 28 28 N 1.31805 * 106.96256 * 359.63711 * 5 4 3 29 29 N 1.28469 * 110.07406 * 0.22632 * 28 5 4 30 30 H 0.97006 * 124.88204 * 179.97438 * 29 28 5 31 31 H 1.09000 * 109.46972 * 300.00744 * 1 2 3 32 32 H 1.09005 * 109.46855 * 60.00156 * 1 2 3 33 33 H 1.09002 * 109.47541 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.47192 * 239.99515 * 2 1 3 35 35 H 1.09001 * 109.47303 * 120.00002 * 2 1 3 36 36 H 1.08000 * 127.25124 * 0.03696 * 4 3 2 37 37 H 1.08994 * 109.64478 * 245.17247 * 9 8 6 38 38 H 1.09004 * 109.64113 * 5.80469 * 9 8 6 39 39 H 1.09001 * 109.41602 * 174.61824 * 10 9 8 40 40 H 1.09001 * 109.41406 * 294.42047 * 10 9 8 41 41 H 1.09001 * 109.47738 * 181.64453 * 14 13 11 42 42 H 1.09005 * 109.47242 * 301.65650 * 14 13 11 43 43 H 1.08998 * 109.53397 * 188.79337 * 15 14 13 44 44 H 1.09007 * 109.43524 * 68.46351 * 15 14 13 45 45 H 0.96999 * 120.00073 * 354.25099 * 20 19 17 46 46 H 1.09002 * 109.52651 * 114.36734 * 27 8 6 47 47 H 1.09005 * 109.52305 * 354.18298 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2059 2.2111 -1.0852 5 6 2.6938 3.4409 -0.5833 6 6 3.0430 4.6373 -1.3761 7 8 2.8482 4.6495 -2.5760 8 7 3.5779 5.7153 -0.7691 9 6 3.7222 5.7594 0.6929 10 6 5.1863 6.0612 1.0265 11 6 5.6260 7.3362 0.3146 12 1 6.6702 7.5342 0.5566 13 8 4.8448 8.4488 0.7480 14 6 5.2783 9.7035 0.2143 15 6 5.1651 9.6768 -1.3093 16 7 5.8433 8.4736 -1.8174 17 6 6.7733 8.5527 -2.8194 18 1 7.5423 7.7990 -2.9031 19 6 6.7277 9.6016 -3.7275 20 7 5.5830 10.1963 -3.9890 21 14 8.2909 10.1692 -4.5782 22 1 7.9755 11.2951 -5.4935 23 1 9.2734 10.6190 -3.5596 24 1 8.8663 9.0442 -5.3582 25 6 5.4887 7.1793 -1.2030 26 1 6.1420 6.3912 -1.5774 27 6 4.0285 6.8711 -1.5539 28 7 2.7718 3.3178 0.7267 29 7 2.3892 2.1443 1.0828 30 1 2.3610 1.8239 1.9980 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0143 1.9561 -2.1170 37 1 3.0844 6.5436 1.1005 38 1 3.4407 4.7960 1.1180 39 1 5.2930 6.1921 2.1033 40 1 5.8111 5.2299 0.6998 41 1 4.6537 10.5032 0.6125 42 1 6.3166 9.8789 0.4960 43 1 5.6379 10.5664 -1.7255 44 1 4.1133 9.6516 -1.5945 45 1 4.7591 9.8496 -3.6123 46 1 3.4073 7.7354 -1.3191 47 1 3.9497 6.6428 -2.6169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074175442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:07 Heat of formation + Delta-G solvation = 33.640219 kcal Electronic energy + Delta-G solvation = -30115.224195 eV Core-core repulsion = 26107.947873 eV Total energy + Delta-G solvation = -4007.276323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.89533 -39.93786 -38.43935 -35.77327 -34.86439 -34.65339 -32.27924 -31.56153 -31.36941 -29.84886 -29.26590 -27.34447 -25.43119 -24.18558 -23.68431 -23.29002 -22.52371 -21.29955 -21.22885 -19.25029 -18.37355 -17.98446 -17.46938 -16.57386 -15.97235 -15.61635 -15.54512 -15.07631 -14.94711 -14.81224 -14.36120 -14.17326 -13.86338 -13.76241 -13.54411 -13.51719 -13.37082 -12.86060 -12.69467 -12.49386 -12.22452 -12.11752 -11.99211 -11.62729 -11.41502 -11.29205 -10.95424 -10.72051 -10.55434 -10.40030 -10.08008 -10.02783 -9.84502 -9.63454 -9.50841 -9.43146 -9.17495 -9.10044 -8.39941 -8.19553 -6.91961 -6.11082 -3.25953 1.49786 1.97461 2.59246 3.30836 3.50303 3.52351 3.58169 3.70965 4.19899 4.29646 4.35217 4.52690 4.55052 4.82122 4.96570 5.06946 5.12802 5.25230 5.30472 5.34223 5.39311 5.45265 5.49441 5.58358 5.68671 5.72229 5.77570 5.78066 5.94117 5.98557 6.01283 6.05008 6.18932 6.22208 6.29132 6.32828 6.42830 6.60748 6.69810 6.79457 6.84315 7.03138 7.03779 7.66090 7.80213 7.85357 7.92445 8.46429 8.51264 9.01283 9.77842 10.20231 11.17259 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019974 B = 0.003036 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.510327 B = 9221.583669 C =10025.277874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C 0.018 3.982 4 C -0.176 4.176 5 C 0.008 3.992 6 C 0.592 3.408 7 O -0.535 6.535 8 N -0.590 5.590 9 C 0.080 3.920 10 C -0.119 4.119 11 C 0.081 3.919 12 H 0.051 0.949 13 O -0.385 6.385 14 C 0.046 3.954 15 C 0.116 3.884 16 N -0.591 5.591 17 C -0.352 4.352 18 H 0.060 0.940 19 C -0.021 4.021 20 N -0.909 5.909 21 Si 1.065 2.935 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.137 3.863 26 H 0.076 0.924 27 C 0.104 3.896 28 N -0.261 5.261 29 N -0.387 5.387 30 H 0.441 0.559 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.162 0.838 37 H 0.068 0.932 38 H 0.134 0.866 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.027 0.973 45 H 0.270 0.730 46 H 0.067 0.933 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.509 -18.086 14.376 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.109 4.109 4 C -0.204 4.204 5 C -0.153 4.153 6 C 0.377 3.623 7 O -0.411 6.411 8 N -0.322 5.322 9 C -0.044 4.044 10 C -0.157 4.157 11 C 0.021 3.979 12 H 0.069 0.931 13 O -0.304 6.304 14 C -0.032 4.032 15 C -0.010 4.010 16 N -0.314 5.314 17 C -0.481 4.481 18 H 0.077 0.923 19 C -0.224 4.224 20 N -0.548 5.548 21 Si 0.894 3.106 22 H -0.210 1.210 23 H -0.220 1.220 24 H -0.219 1.219 25 C 0.029 3.971 26 H 0.094 0.906 27 C -0.019 4.019 28 N -0.095 5.095 29 N -0.099 5.099 30 H 0.285 0.715 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.179 0.821 37 H 0.087 0.913 38 H 0.151 0.849 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.044 0.956 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.802 -16.308 13.659 22.334 hybrid contribution -0.564 -1.556 0.710 1.801 sum -7.366 -17.863 14.369 24.080 Atomic orbital electron populations 1.21789 0.94002 1.02234 1.02754 1.20122 0.96448 0.88720 1.03988 1.21422 1.05300 0.96747 0.87382 1.21512 1.06674 0.92319 0.99879 1.22114 1.06627 0.96930 0.89623 1.17054 0.77992 0.81055 0.86156 1.90797 1.54561 1.81785 1.13934 1.48085 1.59523 1.16531 1.08059 1.22611 0.96415 1.05633 0.79716 1.21754 0.97184 0.96227 1.00562 1.22245 0.94211 0.86509 0.94897 0.93114 1.87739 1.57006 1.15159 1.70510 1.23074 0.98802 0.85013 0.96318 1.21542 0.96231 0.92288 0.90951 1.44360 1.47242 0.98944 1.40863 1.19949 1.05776 1.14760 1.07611 0.92265 1.25865 1.03032 0.97892 0.95563 1.70784 0.98055 1.44618 1.41390 0.83530 0.74738 0.76369 0.75946 1.21048 1.22049 1.21903 1.21601 0.93435 0.90360 0.91730 0.90561 1.22368 0.96827 0.86072 0.96673 1.73187 1.19423 1.01954 1.14970 1.43538 1.47663 1.08961 1.09751 0.71458 0.92699 0.91771 0.91756 0.88984 0.90676 0.82061 0.91332 0.84949 0.90630 0.90751 0.89899 0.93771 0.89477 0.95554 0.91931 0.91495 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 37.16 0.37 -0.36 16 2 C -0.05 -0.27 6.49 -27.89 -0.18 -0.45 16 3 C 0.02 0.15 6.48 -82.21 -0.53 -0.38 16 4 C -0.18 -2.16 10.73 -39.36 -0.42 -2.59 16 5 C 0.01 0.12 6.91 -82.76 -0.57 -0.46 16 6 C 0.59 11.11 7.70 -12.39 -0.10 11.01 16 7 O -0.54 -11.84 16.36 5.31 0.09 -11.75 16 8 N -0.59 -10.85 2.96 -173.94 -0.52 -11.36 16 9 C 0.08 1.22 6.17 -3.70 -0.02 1.20 16 10 C -0.12 -1.78 5.82 -26.90 -0.16 -1.94 16 11 C 0.08 1.51 2.73 -26.89 -0.07 1.44 16 12 H 0.05 0.98 8.11 -51.93 -0.42 0.56 16 13 O -0.38 -7.42 9.59 -35.23 -0.34 -7.75 16 14 C 0.05 0.89 6.96 37.06 0.26 1.15 16 15 C 0.12 2.70 4.36 -3.77 -0.02 2.69 16 16 N -0.59 -14.82 2.58 -164.12 -0.42 -15.24 16 17 C -0.35 -9.84 9.57 -15.06 -0.14 -9.99 16 18 H 0.06 1.67 7.96 -52.49 -0.42 1.25 16 19 C -0.02 -0.59 4.67 -17.43 -0.08 -0.67 16 20 N -0.91 -27.21 12.45 55.49 0.69 -26.52 16 21 Si 1.06 25.30 30.00 -169.99 -5.10 20.20 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.14 2.99 3.03 -67.07 -0.20 2.79 16 26 H 0.08 1.74 7.99 -51.93 -0.42 1.32 16 27 C 0.10 2.24 5.61 -3.72 -0.02 2.22 16 28 N -0.26 -3.18 8.56 33.42 0.29 -2.89 16 29 N -0.39 -3.27 6.83 33.50 0.23 -3.04 16 30 H 0.44 1.99 8.96 -190.43 -1.71 0.28 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.09 0.43 8.14 -51.92 -0.42 0.00 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.07 1.09 7.94 -51.93 -0.41 0.68 16 38 H 0.13 1.82 3.70 -118.13 -0.44 1.38 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.04 0.86 8.13 -51.93 -0.42 0.43 16 43 H 0.09 2.23 6.44 -51.93 -0.33 1.90 16 44 H 0.03 0.64 6.87 -51.93 -0.36 0.28 16 45 H 0.27 8.18 6.77 -40.82 -0.28 7.91 16 46 H 0.07 1.50 6.58 -51.93 -0.34 1.16 16 47 H 0.09 2.16 7.03 -51.93 -0.36 1.80 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -34.24 367.44 -9.95 -44.18 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -8.51 Total: 2.98 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -1.90 Total: 5.66 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.27 Total: -59.05 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.25 Total: -19.51 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.10 Total: 20.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.24 -9.95 -44.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074175442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.825 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds