Wall clock time and date at job start Tue Mar 31 2020 18:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47744 * 2 1 4 4 C 1.35369 * 126.38278 * 275.26433 * 3 2 1 5 5 C 1.41511 * 105.50023 * 180.15366 * 4 3 2 6 6 C 1.47710 * 126.51535 * 179.90645 * 5 4 3 7 7 O 1.21568 * 120.00152 * 4.17628 * 6 5 4 8 8 N 1.34781 * 119.99554 * 184.18607 * 6 5 4 9 9 C 1.46974 * 120.72309 * 355.12467 * 8 6 5 10 10 C 1.53164 * 108.44567 * 125.48428 * 9 8 6 11 11 C 1.52504 * 109.79731 * 54.51732 * 10 9 8 12 12 H 1.08993 * 108.93382 * 180.33891 * 11 10 9 13 13 O 1.42697 * 110.62574 * 61.29913 * 11 10 9 14 14 C 1.43072 * 113.86829 * 174.64162 * 13 11 10 15 15 C 1.52807 * 109.52087 * 61.51343 * 14 13 11 16 16 N 1.47172 * 108.92999 * 308.66249 * 15 14 13 17 17 C 1.36935 * 121.22317 * 230.90570 * 16 15 14 18 18 H 1.08000 * 119.99869 * 154.10861 * 17 16 15 19 19 C 1.38813 * 120.00052 * 334.10907 * 17 16 15 20 20 N 1.31621 * 119.99674 * 333.15341 * 19 17 16 21 21 Si 1.86799 * 120.00029 * 153.14651 * 19 17 16 22 22 H 1.48498 * 109.47157 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47314 * 300.00096 * 21 19 17 24 24 H 1.48502 * 109.46956 * 60.00602 * 21 19 17 25 25 C 1.47596 * 117.54981 * 50.62565 * 16 15 14 26 26 H 1.09000 * 110.30834 * 186.93857 * 25 16 15 27 27 C 1.46792 * 120.71868 * 175.15064 * 8 6 5 28 28 N 1.31805 * 106.96256 * 359.63711 * 5 4 3 29 29 N 1.28469 * 110.07406 * 0.22632 * 28 5 4 30 30 H 0.97006 * 124.88204 * 179.97438 * 29 28 5 31 31 H 1.09000 * 109.46972 * 300.00744 * 1 2 3 32 32 H 1.09005 * 109.46855 * 60.00156 * 1 2 3 33 33 H 1.09002 * 109.47541 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.47192 * 239.99515 * 2 1 3 35 35 H 1.09001 * 109.47303 * 120.00002 * 2 1 3 36 36 H 1.08000 * 127.25124 * 0.03696 * 4 3 2 37 37 H 1.08994 * 109.64478 * 245.17247 * 9 8 6 38 38 H 1.09004 * 109.64113 * 5.80469 * 9 8 6 39 39 H 1.09001 * 109.41602 * 174.61824 * 10 9 8 40 40 H 1.09001 * 109.41406 * 294.42047 * 10 9 8 41 41 H 1.09001 * 109.47738 * 181.64453 * 14 13 11 42 42 H 1.09005 * 109.47242 * 301.65650 * 14 13 11 43 43 H 1.08998 * 109.53397 * 188.79337 * 15 14 13 44 44 H 1.09007 * 109.43524 * 68.46351 * 15 14 13 45 45 H 0.96999 * 120.00073 * 354.25099 * 20 19 17 46 46 H 1.09002 * 109.52651 * 114.36734 * 27 8 6 47 47 H 1.09005 * 109.52305 * 354.18298 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2059 2.2111 -1.0852 5 6 2.6938 3.4409 -0.5833 6 6 3.0430 4.6373 -1.3761 7 8 2.8482 4.6495 -2.5760 8 7 3.5779 5.7153 -0.7691 9 6 3.7222 5.7594 0.6929 10 6 5.1863 6.0612 1.0265 11 6 5.6260 7.3362 0.3146 12 1 6.6702 7.5342 0.5566 13 8 4.8448 8.4488 0.7480 14 6 5.2783 9.7035 0.2143 15 6 5.1651 9.6768 -1.3093 16 7 5.8433 8.4736 -1.8174 17 6 6.7733 8.5527 -2.8194 18 1 7.5423 7.7990 -2.9031 19 6 6.7277 9.6016 -3.7275 20 7 5.5830 10.1963 -3.9890 21 14 8.2909 10.1692 -4.5782 22 1 7.9755 11.2951 -5.4935 23 1 9.2734 10.6190 -3.5596 24 1 8.8663 9.0442 -5.3582 25 6 5.4887 7.1793 -1.2030 26 1 6.1420 6.3912 -1.5774 27 6 4.0285 6.8711 -1.5539 28 7 2.7718 3.3178 0.7267 29 7 2.3892 2.1443 1.0828 30 1 2.3610 1.8239 1.9980 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0143 1.9561 -2.1170 37 1 3.0844 6.5436 1.1005 38 1 3.4407 4.7960 1.1180 39 1 5.2930 6.1921 2.1033 40 1 5.8111 5.2299 0.6998 41 1 4.6537 10.5032 0.6125 42 1 6.3166 9.8789 0.4960 43 1 5.6379 10.5664 -1.7255 44 1 4.1133 9.6516 -1.5945 45 1 4.7591 9.8496 -3.6123 46 1 3.4073 7.7354 -1.3191 47 1 3.9497 6.6428 -2.6169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074175442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:06 Heat of formation + Delta-G solvation = 9.663136 kcal Electronic energy + Delta-G solvation = -30116.263920 eV Core-core repulsion = 26107.947873 eV Total energy + Delta-G solvation = -4008.316047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.81586 -41.50979 -40.02768 -37.33579 -36.74334 -35.25362 -33.70521 -33.18121 -32.79130 -31.23183 -30.32316 -29.18781 -26.92202 -25.56070 -24.87851 -24.67998 -23.96709 -22.90170 -22.06737 -20.77747 -19.80838 -19.49116 -18.98307 -17.81171 -17.26910 -17.08940 -17.04575 -16.75265 -16.40047 -16.00652 -15.51750 -15.48030 -15.37210 -15.27423 -15.14212 -14.73483 -14.36184 -14.23549 -14.06572 -13.94005 -13.63320 -13.33193 -13.24672 -12.89707 -12.55026 -12.48092 -12.42352 -12.27152 -12.13062 -11.94490 -11.88369 -11.76681 -11.47894 -11.31579 -10.92275 -10.83176 -10.51028 -10.42936 -10.00762 -9.80876 -8.97386 -8.33449 -5.47835 0.39245 1.07286 1.55523 1.61978 1.66184 1.82512 2.07742 2.23952 2.59195 2.76431 3.10724 3.19233 3.32360 3.64190 3.69751 3.87541 3.97420 4.01457 4.10037 4.15177 4.22358 4.29733 4.37226 4.43214 4.46379 4.49688 4.52286 4.66332 4.69145 4.74224 4.81214 4.84550 4.88814 4.93940 5.01450 5.09694 5.13215 5.19179 5.20646 5.26379 5.41000 5.50682 5.72728 6.09996 6.20275 6.27567 6.33585 6.80771 6.88302 7.04536 7.64449 8.07806 8.90385 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019974 B = 0.003036 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.510327 B = 9221.583669 C =10025.277874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.051 4.051 3 C 0.048 3.952 4 C -0.201 4.201 5 C -0.024 4.024 6 C 0.586 3.414 7 O -0.584 6.584 8 N -0.591 5.591 9 C 0.081 3.919 10 C -0.110 4.110 11 C 0.087 3.913 12 H 0.051 0.949 13 O -0.380 6.380 14 C 0.057 3.943 15 C 0.122 3.878 16 N -0.608 5.608 17 C -0.360 4.360 18 H 0.052 0.948 19 C -0.071 4.071 20 N -0.934 5.934 21 Si 1.117 2.883 22 H -0.290 1.290 23 H -0.274 1.274 24 H -0.279 1.279 25 C 0.135 3.865 26 H 0.060 0.940 27 C 0.122 3.878 28 N -0.260 5.260 29 N -0.359 5.359 30 H 0.463 0.537 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.156 0.844 37 H 0.067 0.933 38 H 0.157 0.843 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.007 0.993 45 H 0.252 0.748 46 H 0.052 0.948 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 -20.601 17.926 28.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.090 4.090 3 C -0.080 4.080 4 C -0.230 4.230 5 C -0.182 4.182 6 C 0.374 3.626 7 O -0.463 6.463 8 N -0.323 5.323 9 C -0.041 4.041 10 C -0.148 4.148 11 C 0.028 3.972 12 H 0.069 0.931 13 O -0.299 6.299 14 C -0.021 4.021 15 C -0.004 4.004 16 N -0.332 5.332 17 C -0.489 4.489 18 H 0.069 0.931 19 C -0.268 4.268 20 N -0.575 5.575 21 Si 0.941 3.059 22 H -0.216 1.216 23 H -0.200 1.200 24 H -0.205 1.205 25 C 0.028 3.972 26 H 0.078 0.922 27 C -0.003 4.003 28 N -0.096 5.096 29 N -0.075 5.075 30 H 0.313 0.687 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.174 0.826 37 H 0.085 0.915 38 H 0.174 0.826 39 H 0.130 0.870 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.025 0.975 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.482 -18.857 17.299 26.398 hybrid contribution -0.763 -0.936 -0.353 1.258 sum -7.244 -19.793 16.946 27.045 Atomic orbital electron populations 1.21790 0.93692 1.03254 1.02031 1.20317 0.96483 0.86153 1.06015 1.21815 1.02575 0.97687 0.85904 1.21643 1.08021 0.92270 1.01023 1.21526 1.09841 0.96209 0.90643 1.17640 0.76930 0.81989 0.86012 1.90754 1.56492 1.82821 1.16256 1.48122 1.59370 1.15522 1.09245 1.22866 0.96861 1.06997 0.77387 1.21788 0.96666 0.94176 1.02212 1.22246 0.94532 0.88108 0.92317 0.93081 1.87758 1.57203 1.15112 1.69836 1.22985 1.00029 0.86130 0.92938 1.21447 0.94433 0.90621 0.93874 1.44574 1.47230 1.00709 1.40735 1.20178 1.06004 1.14569 1.08186 0.93060 1.27279 1.04935 0.98249 0.96317 1.70912 0.98117 1.45522 1.42972 0.82841 0.71631 0.76029 0.75415 1.21630 1.20013 1.20521 1.21713 0.92739 0.88569 0.94206 0.92216 1.21830 0.96787 0.86896 0.94782 1.72883 1.19645 1.03685 1.13415 1.43580 1.45317 1.07618 1.10997 0.68746 0.92507 0.93477 0.89916 0.88191 0.87455 0.82634 0.91489 0.82645 0.87011 0.89799 0.86724 0.93163 0.92131 0.97517 0.93778 0.92967 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 71.98 0.71 -0.27 16 2 C -0.05 -0.32 6.49 29.85 0.19 -0.12 16 3 C 0.05 0.69 6.48 41.40 0.27 0.96 16 4 C -0.20 -4.83 10.73 22.41 0.24 -4.59 16 5 C -0.02 -0.70 6.91 42.46 0.29 -0.41 16 6 C 0.59 23.02 7.70 86.75 0.67 23.69 16 7 O -0.58 -27.89 16.36 -3.93 -0.06 -27.95 16 8 N -0.59 -22.43 2.96 -822.49 -2.44 -24.86 16 9 C 0.08 2.36 6.17 86.34 0.53 2.89 16 10 C -0.11 -3.02 5.82 30.48 0.18 -2.84 16 11 C 0.09 3.17 2.73 30.49 0.08 3.26 16 12 H 0.05 1.89 8.11 -2.39 -0.02 1.87 16 13 O -0.38 -14.09 9.59 -148.98 -1.43 -15.52 16 14 C 0.06 2.17 6.96 71.92 0.50 2.67 16 15 C 0.12 5.92 4.36 86.19 0.38 6.30 16 16 N -0.61 -31.86 2.58 -673.17 -1.74 -33.60 16 17 C -0.36 -20.91 9.57 84.03 0.80 -20.11 16 18 H 0.05 3.00 7.96 -2.91 -0.02 2.98 16 19 C -0.07 -4.14 4.67 84.86 0.40 -3.74 16 20 N -0.93 -58.51 12.45 21.65 0.27 -58.24 16 21 Si 1.12 52.09 30.00 68.60 2.06 54.14 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 25 C 0.14 6.13 3.03 44.95 0.14 6.26 16 26 H 0.06 2.86 7.99 -2.39 -0.02 2.84 16 27 C 0.12 5.61 5.61 86.43 0.49 6.09 16 28 N -0.26 -5.71 8.56 -48.17 -0.41 -6.12 16 29 N -0.36 -4.74 6.83 -47.93 -0.33 -5.06 16 30 H 0.46 1.88 8.96 -219.98 -1.97 -0.09 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.08 0.28 8.14 -2.39 -0.02 0.27 16 34 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.11 0.07 8.14 -2.39 -0.02 0.06 16 36 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 37 H 0.07 2.00 7.94 -2.39 -0.02 1.98 16 38 H 0.16 3.87 3.70 -88.02 -0.33 3.55 16 39 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 42 H 0.05 1.88 8.13 -2.38 -0.02 1.86 16 43 H 0.06 3.24 6.44 -2.39 -0.02 3.23 16 44 H 0.01 0.35 6.87 -2.38 -0.02 0.34 16 45 H 0.25 16.33 6.77 -92.71 -0.63 15.70 16 46 H 0.05 2.51 6.58 -2.39 -0.02 2.50 16 47 H 0.04 2.41 7.03 -2.38 -0.02 2.40 16 Total: -1.00 -80.87 367.44 0.64 -80.23 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -1.15 Total: 16.97 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 5.87 Total: 20.02 kcal Atomic # 7 Polarization: -123.25 SS G_CDS: -4.64 Total: -127.89 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -1.49 Total: -43.47 kcal Atomic # 14 Polarization: 52.09 SS G_CDS: 2.06 Total: 54.14 kcal Total: -80.87 0.64 -80.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074175442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.894 kcal (2) G-P(sol) polarization free energy of solvation -80.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds