Wall clock time and date at job start Tue Mar 31 2020 17:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47017 * 2 1 4 4 N 1.30451 * 125.99261 * 269.99583 * 3 2 1 5 5 N 1.39926 * 108.89992 * 179.97438 * 4 3 2 6 6 H 0.97006 * 125.75616 * 180.02562 * 5 4 3 7 7 C 1.34260 * 108.49563 * 359.75118 * 5 4 3 8 8 C 1.38042 * 107.41292 * 0.39419 * 7 5 4 9 9 C 1.47427 * 126.41546 * 179.86524 * 8 7 5 10 10 O 1.21606 * 120.00179 * 152.46460 * 9 8 7 11 11 N 1.34784 * 120.00224 * 332.47231 * 9 8 7 12 12 C 1.46832 * 120.40003 * 357.41734 * 11 9 8 13 13 C 1.53374 * 109.24888 * 232.21276 * 12 11 9 14 14 C 1.52787 * 108.81368 * 306.17603 * 13 12 11 15 15 H 1.08998 * 109.34098 * 303.33573 * 14 13 12 16 16 O 1.42599 * 111.11670 * 182.54830 * 14 13 12 17 17 C 1.43146 * 113.63438 * 176.39689 * 16 14 13 18 18 C 1.53187 * 109.73872 * 61.69381 * 17 16 14 19 19 N 1.47355 * 108.79882 * 308.77899 * 18 17 16 20 20 C 1.36936 * 121.30151 * 230.22090 * 19 18 17 21 21 H 1.08000 * 119.99916 * 157.84959 * 20 19 18 22 22 C 1.38814 * 120.00039 * 337.84849 * 20 19 18 23 23 N 1.31615 * 119.99947 * 344.49792 * 22 20 19 24 24 Si 1.86798 * 119.99645 * 164.50425 * 22 20 19 25 25 H 1.48499 * 109.47272 * 59.99881 * 24 22 20 26 26 H 1.48507 * 109.46917 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47017 * 299.99527 * 24 22 20 28 28 C 1.46875 * 117.39043 * 50.24298 * 19 18 17 29 29 H 1.09003 * 110.21133 * 67.99333 * 28 19 18 30 30 C 1.47130 * 120.40726 * 177.39757 * 11 9 8 31 31 H 1.09005 * 109.46864 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47272 * 300.00024 * 1 2 3 33 33 H 1.09002 * 109.47127 * 60.00129 * 1 2 3 34 34 H 1.08998 * 109.47272 * 239.99976 * 2 1 3 35 35 H 1.09002 * 109.47127 * 119.99871 * 2 1 3 36 36 H 1.07993 * 126.29487 * 180.24189 * 7 5 4 37 37 H 1.09004 * 109.50713 * 112.28912 * 12 11 9 38 38 H 1.08993 * 109.54880 * 352.16989 * 12 11 9 39 39 H 1.09003 * 109.58151 * 186.37425 * 13 12 11 40 40 H 1.08998 * 109.57773 * 65.97807 * 13 12 11 41 41 H 1.09001 * 109.42235 * 181.77543 * 17 16 14 42 42 H 1.08996 * 109.42722 * 301.60755 * 17 16 14 43 43 H 1.09001 * 109.58431 * 188.98294 * 18 17 16 44 44 H 1.09007 * 109.58403 * 68.57559 * 18 17 16 45 45 H 0.96999 * 119.99556 * 179.97438 * 23 22 20 46 46 H 1.08998 * 109.72420 * 246.46197 * 30 11 9 47 47 H 1.08994 * 109.72535 * 7.13355 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2879 2.1436 -1.0555 5 7 2.7331 3.4048 -0.6442 6 1 2.9904 4.1339 -1.2300 7 6 2.7384 3.4378 0.6980 8 6 2.3084 2.2039 1.1432 9 6 2.1593 1.7838 2.5485 10 8 1.3461 0.9295 2.8448 11 7 2.9240 2.3468 3.5050 12 6 3.9475 3.3381 3.1503 13 6 5.2903 2.9196 3.7619 14 6 5.1010 2.6985 5.2618 15 1 4.7005 3.6064 5.7128 16 8 6.3357 2.3634 5.8915 17 6 6.2359 2.2242 7.3127 18 6 5.2689 1.0864 7.6545 19 7 4.0090 1.2971 6.9199 20 6 2.7980 1.2552 7.5577 21 1 1.9407 1.7461 7.1214 22 6 2.6723 0.5816 8.7649 23 7 3.6069 -0.2623 9.1480 24 14 1.1768 0.8729 9.8456 25 1 -0.0528 0.5038 9.0991 26 1 1.2815 0.0400 11.0706 27 1 1.1130 2.3068 10.2265 28 6 4.1031 1.5535 5.4767 29 1 4.4519 0.6607 4.9576 30 6 2.7432 1.9758 4.9173 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.0283 4.2748 1.3157 37 1 3.6589 4.3145 3.5396 38 1 4.0425 3.3922 2.0659 39 1 6.0271 3.7061 3.5986 40 1 5.6312 1.9948 3.2965 41 1 7.2197 2.0000 7.7250 42 1 5.8670 3.1552 7.7431 43 1 5.0709 1.0847 8.7264 44 1 5.7081 0.1330 7.3606 45 1 3.5192 -0.7326 9.9918 46 1 2.3648 2.8313 5.4767 47 1 2.0405 1.1461 4.9926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074284911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:38 Heat of formation + Delta-G solvation = 37.479646 kcal Electronic energy + Delta-G solvation = -30415.400916 eV Core-core repulsion = 26408.291083 eV Total energy + Delta-G solvation = -4007.109833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.71260 -39.78684 -38.31450 -36.10285 -34.73784 -34.25544 -32.14192 -31.39786 -30.63418 -30.39538 -29.47577 -27.03745 -25.45068 -24.20391 -23.98255 -22.85271 -22.04193 -21.13747 -20.26563 -19.63208 -19.32243 -17.58415 -16.80107 -16.70856 -15.64198 -15.52301 -15.44539 -15.04695 -14.86227 -14.68728 -14.36028 -14.09392 -13.93251 -13.60299 -13.46149 -13.19608 -13.05467 -12.82906 -12.55826 -12.47987 -12.23885 -11.86654 -11.49838 -11.34409 -11.25516 -10.98426 -10.95533 -10.84237 -10.72964 -10.55627 -10.25158 -10.21285 -9.91649 -9.67971 -9.64529 -9.61129 -9.01143 -8.87657 -8.52211 -8.31255 -6.78454 -5.81050 -3.24070 1.35540 2.09796 2.48051 3.15952 3.38223 3.43495 3.44008 3.46356 4.22497 4.34624 4.41314 4.44090 4.81104 4.91650 4.93913 5.15961 5.26169 5.28578 5.36291 5.40886 5.41906 5.43363 5.50565 5.59371 5.68199 5.73949 5.91425 5.93181 5.96421 6.09614 6.11103 6.14466 6.25391 6.28443 6.34909 6.38405 6.47756 6.64891 6.73421 6.86853 6.89048 7.18377 7.35754 7.56583 7.66431 7.70207 7.90942 8.32266 8.47035 9.11300 9.75148 10.29760 11.25805 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.003809 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.111631 B = 7349.155087 C = 8719.886205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C 0.137 3.863 4 N -0.299 5.299 5 N -0.465 5.465 6 H 0.442 0.558 7 C 0.089 3.911 8 C -0.274 4.274 9 C 0.589 3.411 10 O -0.531 6.531 11 N -0.607 5.607 12 C 0.094 3.906 13 C -0.124 4.124 14 C 0.077 3.923 15 H 0.052 0.948 16 O -0.390 6.390 17 C 0.039 3.961 18 C 0.136 3.864 19 N -0.589 5.589 20 C -0.253 4.253 21 H 0.075 0.925 22 C 0.001 3.999 23 N -0.905 5.905 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.137 3.863 29 H 0.037 0.963 30 C 0.125 3.875 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.108 0.892 44 H 0.025 0.975 45 H 0.255 0.745 46 H 0.072 0.928 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 9.925 -16.764 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 C -0.031 4.031 4 N -0.121 5.121 5 N -0.170 5.170 6 H 0.287 0.713 7 C -0.063 4.063 8 C -0.289 4.289 9 C 0.377 3.623 10 O -0.408 6.408 11 N -0.341 5.341 12 C -0.029 4.029 13 C -0.163 4.163 14 C 0.017 3.983 15 H 0.070 0.930 16 O -0.310 6.310 17 C -0.039 4.039 18 C 0.011 3.989 19 N -0.313 5.313 20 C -0.382 4.382 21 H 0.093 0.907 22 C -0.197 4.197 23 N -0.551 5.551 24 Si 0.735 3.265 25 H -0.207 1.207 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.029 3.971 29 H 0.054 0.946 30 C 0.004 3.996 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.211 0.789 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.126 0.874 44 H 0.043 0.957 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.328 9.344 -17.787 20.136 hybrid contribution -0.541 0.708 1.471 1.720 sum 0.787 10.052 -16.317 19.181 Atomic orbital electron populations 1.21639 0.93682 1.02171 1.02308 1.20039 0.96861 0.87871 1.03633 1.22459 0.94960 0.97078 0.88621 1.77132 1.21812 0.90781 1.22423 1.46124 1.52096 1.13325 1.05430 0.71313 1.23514 0.97803 0.99473 0.85461 1.20367 1.18081 0.95583 0.94858 1.17269 0.80666 0.81053 0.83290 1.90783 1.36172 1.31737 1.82141 1.48071 1.35775 1.42360 1.07874 1.22224 0.87714 0.91949 1.01012 1.21847 0.96592 1.02749 0.95066 1.22411 0.86311 0.97754 0.91783 0.93031 1.87735 1.30895 1.91332 1.21007 1.23349 1.00436 0.99902 0.80173 1.21625 0.84091 0.92963 1.00245 1.44089 1.03048 1.83895 1.00301 1.19179 0.88139 1.27527 1.03330 0.90721 1.24956 0.98053 0.96565 1.00086 1.69975 1.34813 1.27393 1.22870 0.86315 0.82555 0.77603 0.80045 1.20700 1.21566 1.21054 1.21284 0.92943 0.95368 0.87528 0.94555 1.21776 0.98616 1.01928 0.77313 0.91956 0.91344 0.93182 0.90602 0.88923 0.78920 0.91196 0.88660 0.90387 0.90814 0.90131 0.94178 0.87387 0.95693 0.93459 0.90950 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.89 37.16 0.37 -1.28 16 2 C -0.04 -0.55 5.87 -27.88 -0.16 -0.72 16 3 C 0.14 1.80 6.51 -82.02 -0.53 1.26 16 4 N -0.30 -3.58 12.63 33.90 0.43 -3.15 16 5 N -0.46 -3.85 7.29 30.85 0.22 -3.63 16 6 H 0.44 1.92 8.96 -182.72 -1.64 0.28 16 7 C 0.09 0.79 9.64 -16.56 -0.16 0.63 16 8 C -0.27 -3.57 5.67 -105.07 -0.60 -4.16 16 9 C 0.59 9.54 7.54 -12.52 -0.09 9.44 16 10 O -0.53 -10.46 14.77 5.27 0.08 -10.38 16 11 N -0.61 -9.31 2.98 -173.96 -0.52 -9.83 16 12 C 0.09 1.05 5.23 -3.67 -0.02 1.03 16 13 C -0.12 -1.64 5.82 -26.65 -0.16 -1.80 16 14 C 0.08 1.37 2.48 -26.63 -0.07 1.30 16 15 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 16 O -0.39 -7.62 10.49 -35.23 -0.37 -7.99 16 17 C 0.04 0.77 6.95 37.25 0.26 1.03 16 18 C 0.14 3.24 5.49 -3.48 -0.02 3.23 16 19 N -0.59 -14.50 3.06 -164.35 -0.50 -15.00 16 20 C -0.25 -6.69 9.00 -15.06 -0.14 -6.83 16 21 H 0.08 1.91 6.14 -52.49 -0.32 1.59 16 22 C 0.00 0.04 5.04 -17.43 -0.09 -0.05 16 23 N -0.91 -25.73 10.78 55.49 0.60 -25.13 16 24 Si 0.91 21.43 29.58 -169.99 -5.03 16.40 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 C 0.14 2.87 3.03 -67.53 -0.20 2.66 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 C 0.13 2.39 4.45 -3.70 -0.02 2.37 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.95 7.76 -51.93 -0.40 0.54 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.29 7.36 -51.93 -0.38 0.90 16 36 H 0.19 1.02 6.04 -52.49 -0.32 0.70 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.82 3.76 -51.93 -0.20 0.62 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.11 2.81 5.80 -51.93 -0.30 2.51 16 44 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.07 1.37 7.43 -51.93 -0.39 0.98 16 47 H 0.10 2.29 6.73 -51.93 -0.35 1.94 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -33.53 363.38 -9.32 -42.84 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.08 Total: 2.27 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -1.62 Total: 8.12 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.23 Total: -56.75 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.29 Total: -18.37 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.53 -9.32 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074284911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.324 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds