Wall clock time and date at job start Tue Mar 31 2020 17:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47017 * 2 1 4 4 N 1.30451 * 125.99261 * 269.99583 * 3 2 1 5 5 N 1.39926 * 108.89992 * 179.97438 * 4 3 2 6 6 H 0.97006 * 125.75616 * 180.02562 * 5 4 3 7 7 C 1.34260 * 108.49563 * 359.75118 * 5 4 3 8 8 C 1.38042 * 107.41292 * 0.39419 * 7 5 4 9 9 C 1.47427 * 126.41546 * 179.86524 * 8 7 5 10 10 O 1.21606 * 120.00179 * 152.46460 * 9 8 7 11 11 N 1.34784 * 120.00224 * 332.47231 * 9 8 7 12 12 C 1.46832 * 120.40003 * 357.41734 * 11 9 8 13 13 C 1.53374 * 109.24888 * 232.21276 * 12 11 9 14 14 C 1.52787 * 108.81368 * 306.17603 * 13 12 11 15 15 H 1.08998 * 109.34098 * 303.33573 * 14 13 12 16 16 O 1.42599 * 111.11670 * 182.54830 * 14 13 12 17 17 C 1.43146 * 113.63438 * 176.39689 * 16 14 13 18 18 C 1.53187 * 109.73872 * 61.69381 * 17 16 14 19 19 N 1.47355 * 108.79882 * 308.77899 * 18 17 16 20 20 C 1.36936 * 121.30151 * 230.22090 * 19 18 17 21 21 H 1.08000 * 119.99916 * 157.84959 * 20 19 18 22 22 C 1.38814 * 120.00039 * 337.84849 * 20 19 18 23 23 N 1.31615 * 119.99947 * 344.49792 * 22 20 19 24 24 Si 1.86798 * 119.99645 * 164.50425 * 22 20 19 25 25 H 1.48499 * 109.47272 * 59.99881 * 24 22 20 26 26 H 1.48507 * 109.46917 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47017 * 299.99527 * 24 22 20 28 28 C 1.46875 * 117.39043 * 50.24298 * 19 18 17 29 29 H 1.09003 * 110.21133 * 67.99333 * 28 19 18 30 30 C 1.47130 * 120.40726 * 177.39757 * 11 9 8 31 31 H 1.09005 * 109.46864 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47272 * 300.00024 * 1 2 3 33 33 H 1.09002 * 109.47127 * 60.00129 * 1 2 3 34 34 H 1.08998 * 109.47272 * 239.99976 * 2 1 3 35 35 H 1.09002 * 109.47127 * 119.99871 * 2 1 3 36 36 H 1.07993 * 126.29487 * 180.24189 * 7 5 4 37 37 H 1.09004 * 109.50713 * 112.28912 * 12 11 9 38 38 H 1.08993 * 109.54880 * 352.16989 * 12 11 9 39 39 H 1.09003 * 109.58151 * 186.37425 * 13 12 11 40 40 H 1.08998 * 109.57773 * 65.97807 * 13 12 11 41 41 H 1.09001 * 109.42235 * 181.77543 * 17 16 14 42 42 H 1.08996 * 109.42722 * 301.60755 * 17 16 14 43 43 H 1.09001 * 109.58431 * 188.98294 * 18 17 16 44 44 H 1.09007 * 109.58403 * 68.57559 * 18 17 16 45 45 H 0.96999 * 119.99556 * 179.97438 * 23 22 20 46 46 H 1.08998 * 109.72420 * 246.46197 * 30 11 9 47 47 H 1.08994 * 109.72535 * 7.13355 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2879 2.1436 -1.0555 5 7 2.7331 3.4048 -0.6442 6 1 2.9904 4.1339 -1.2300 7 6 2.7384 3.4378 0.6980 8 6 2.3084 2.2039 1.1432 9 6 2.1593 1.7838 2.5485 10 8 1.3461 0.9295 2.8448 11 7 2.9240 2.3468 3.5050 12 6 3.9475 3.3381 3.1503 13 6 5.2903 2.9196 3.7619 14 6 5.1010 2.6985 5.2618 15 1 4.7005 3.6064 5.7128 16 8 6.3357 2.3634 5.8915 17 6 6.2359 2.2242 7.3127 18 6 5.2689 1.0864 7.6545 19 7 4.0090 1.2971 6.9199 20 6 2.7980 1.2552 7.5577 21 1 1.9407 1.7461 7.1214 22 6 2.6723 0.5816 8.7649 23 7 3.6069 -0.2623 9.1480 24 14 1.1768 0.8729 9.8456 25 1 -0.0528 0.5038 9.0991 26 1 1.2815 0.0400 11.0706 27 1 1.1130 2.3068 10.2265 28 6 4.1031 1.5535 5.4767 29 1 4.4519 0.6607 4.9576 30 6 2.7432 1.9758 4.9173 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.0283 4.2748 1.3157 37 1 3.6589 4.3145 3.5396 38 1 4.0425 3.3922 2.0659 39 1 6.0271 3.7061 3.5986 40 1 5.6312 1.9948 3.2965 41 1 7.2197 2.0000 7.7250 42 1 5.8670 3.1552 7.7431 43 1 5.0709 1.0847 8.7264 44 1 5.7081 0.1330 7.3606 45 1 3.5192 -0.7326 9.9918 46 1 2.3648 2.8313 5.4767 47 1 2.0405 1.1461 4.9926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074284911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:37 Heat of formation + Delta-G solvation = 12.842264 kcal Electronic energy + Delta-G solvation = -30416.469273 eV Core-core repulsion = 26408.291083 eV Total energy + Delta-G solvation = -4008.178190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.61375 -41.13750 -39.73794 -37.43001 -36.55179 -35.18929 -33.68593 -32.96876 -31.94071 -31.29509 -30.80924 -28.81534 -26.88557 -25.62847 -25.04522 -24.14398 -23.47064 -22.37709 -21.56299 -21.15343 -20.24941 -18.75229 -18.44957 -17.98104 -17.14602 -16.97051 -16.62800 -16.54816 -16.13159 -15.84552 -15.74052 -15.51632 -15.20826 -14.98453 -14.84975 -14.64536 -14.56245 -14.10898 -13.81680 -13.72650 -13.40345 -13.18246 -12.96388 -12.81210 -12.60458 -12.44319 -12.37991 -12.29209 -12.12788 -12.05297 -11.86968 -11.73825 -11.61705 -11.24852 -10.89576 -10.74774 -10.51101 -10.48789 -9.85870 -9.56750 -8.78251 -7.87648 -5.33861 0.54720 1.09060 1.47123 1.48654 1.55078 1.72617 2.02002 2.31977 2.49436 2.86350 3.25581 3.40627 3.46377 3.68084 3.78682 3.93758 4.02358 4.09827 4.13407 4.21888 4.30312 4.39079 4.42008 4.45479 4.48273 4.53566 4.57983 4.61628 4.65082 4.67199 4.84337 4.88676 5.02443 5.03149 5.12531 5.13444 5.16882 5.30258 5.34984 5.41019 5.47262 5.60671 5.64443 6.25849 6.28391 6.36950 6.43304 6.58697 7.06199 7.25636 7.75167 8.27436 9.17193 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.003809 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.111631 B = 7349.155087 C = 8719.886205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.046 4.046 3 C 0.122 3.878 4 N -0.315 5.315 5 N -0.441 5.441 6 H 0.463 0.537 7 C 0.126 3.874 8 C -0.311 4.311 9 C 0.585 3.415 10 O -0.582 6.582 11 N -0.606 5.606 12 C 0.092 3.908 13 C -0.116 4.116 14 C 0.081 3.919 15 H 0.061 0.939 16 O -0.394 6.394 17 C 0.052 3.948 18 C 0.139 3.861 19 N -0.606 5.606 20 C -0.257 4.257 21 H 0.080 0.920 22 C -0.053 4.053 23 N -0.938 5.938 24 Si 0.968 3.032 25 H -0.282 1.282 26 H -0.294 1.294 27 H -0.271 1.271 28 C 0.133 3.867 29 H 0.000 1.000 30 C 0.142 3.858 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.241 0.759 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.058 0.942 41 H 0.106 0.894 42 H 0.051 0.949 43 H 0.084 0.916 44 H -0.009 1.009 45 H 0.250 0.750 46 H 0.077 0.923 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.408 13.914 -18.996 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.086 4.086 3 C -0.046 4.046 4 N -0.138 5.138 5 N -0.148 5.148 6 H 0.313 0.687 7 C -0.027 4.027 8 C -0.326 4.326 9 C 0.376 3.624 10 O -0.462 6.462 11 N -0.339 5.339 12 C -0.029 4.029 13 C -0.155 4.155 14 C 0.021 3.979 15 H 0.079 0.921 16 O -0.313 6.313 17 C -0.025 4.025 18 C 0.014 3.986 19 N -0.331 5.331 20 C -0.386 4.386 21 H 0.097 0.903 22 C -0.248 4.248 23 N -0.585 5.585 24 Si 0.796 3.204 25 H -0.208 1.208 26 H -0.220 1.220 27 H -0.197 1.197 28 C 0.025 3.975 29 H 0.018 0.982 30 C 0.018 3.982 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.257 0.743 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.136 0.864 40 H 0.077 0.923 41 H 0.124 0.876 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.009 0.991 45 H 0.060 0.940 46 H 0.095 0.905 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.156 13.394 -20.095 24.245 hybrid contribution -0.764 -0.553 2.064 2.270 sum 1.392 12.841 -18.031 22.179 Atomic orbital electron populations 1.21559 0.93449 1.02609 1.01408 1.19992 0.97103 0.88406 1.03068 1.22488 0.95526 0.97361 0.89182 1.77086 1.22436 0.92131 1.22146 1.46153 1.50130 1.12730 1.05784 0.68737 1.23987 0.94440 0.98632 0.85667 1.20154 1.21831 0.97894 0.92739 1.17791 0.79828 0.80195 0.84615 1.90753 1.38382 1.34050 1.83059 1.48087 1.36750 1.43147 1.05912 1.22644 0.85201 0.91974 1.03096 1.21898 0.98862 1.03572 0.91154 1.22530 0.84559 0.95863 0.94907 0.92086 1.87744 1.31697 1.91227 1.20658 1.23169 1.00419 0.98182 0.80743 1.21482 0.84902 0.93449 0.98788 1.44390 1.02799 1.83829 1.02083 1.19519 0.89071 1.26697 1.03317 0.90277 1.25719 1.00774 0.96747 1.01514 1.70151 1.36686 1.28694 1.23015 0.85330 0.79278 0.77844 0.77974 1.20786 1.22009 1.19685 1.21449 0.95264 0.95581 0.85183 0.98241 1.21271 0.96420 1.00442 0.80033 0.90945 0.93970 0.92066 0.89038 0.91475 0.74340 0.87501 0.85316 0.86442 0.92302 0.87555 0.93099 0.89830 0.99133 0.94042 0.90495 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.89 71.98 0.71 -2.49 16 2 C -0.05 -1.18 5.87 29.85 0.18 -1.01 16 3 C 0.12 3.07 6.51 43.52 0.28 3.36 16 4 N -0.32 -6.72 12.63 -46.67 -0.59 -7.31 16 5 N -0.44 -5.29 7.29 -56.32 -0.41 -5.70 16 6 H 0.46 1.51 8.96 -213.42 -1.91 -0.41 16 7 C 0.13 1.61 9.64 84.28 0.81 2.43 16 8 C -0.31 -7.52 5.67 -20.15 -0.11 -7.63 16 9 C 0.59 19.00 7.54 86.66 0.65 19.65 16 10 O -0.58 -24.38 14.77 -4.05 -0.06 -24.44 16 11 N -0.61 -17.93 2.98 -822.53 -2.45 -20.38 16 12 C 0.09 1.63 5.23 86.44 0.45 2.08 16 13 C -0.12 -2.65 5.82 30.65 0.18 -2.47 16 14 C 0.08 2.70 2.48 30.66 0.08 2.78 16 15 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 16 O -0.39 -14.69 10.49 -148.98 -1.56 -16.26 16 17 C 0.05 2.01 6.95 72.04 0.50 2.52 16 18 C 0.14 6.90 5.49 86.28 0.47 7.38 16 19 N -0.61 -30.94 3.06 -673.89 -2.06 -33.01 16 20 C -0.26 -14.03 9.00 84.03 0.76 -13.28 16 21 H 0.08 4.17 6.14 -2.91 -0.02 4.15 16 22 C -0.05 -2.97 5.04 84.86 0.43 -2.54 16 23 N -0.94 -55.81 10.78 21.65 0.23 -55.58 16 24 Si 0.97 45.22 29.58 68.60 2.03 47.25 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 28 C 0.13 5.70 3.03 45.05 0.14 5.83 16 29 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 30 C 0.14 5.53 4.45 86.26 0.38 5.91 16 31 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.04 1.23 7.76 -2.39 -0.02 1.21 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 2.02 7.36 -2.39 -0.02 2.01 16 36 H 0.24 0.73 6.04 -2.91 -0.02 0.71 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.13 1.43 3.76 -2.39 -0.01 1.42 16 39 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.08 4.55 5.80 -2.39 -0.01 4.54 16 44 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 45 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 46 H 0.08 2.90 7.43 -2.39 -0.02 2.88 16 47 H 0.06 2.86 6.73 -2.39 -0.02 2.84 16 Total: -1.00 -80.69 363.38 0.13 -80.56 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -0.90 Total: 12.34 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: 5.91 Total: 22.52 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -5.28 Total: -121.97 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -1.62 Total: -40.70 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -80.69 0.13 -80.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074284911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.402 kcal (2) G-P(sol) polarization free energy of solvation -80.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds