Wall clock time and date at job start Tue Mar 31 2020 17:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46890 * 2 1 4 4 N 1.30444 * 125.98781 * 270.16922 * 3 2 1 5 5 N 1.39940 * 108.89685 * 180.26638 * 4 3 2 6 6 H 0.96997 * 125.75177 * 179.73705 * 5 4 3 7 7 C 1.34261 * 108.48588 * 359.74230 * 5 4 3 8 8 C 1.38040 * 107.41912 * 359.97438 * 7 5 4 9 9 C 1.47432 * 126.41323 * 179.97438 * 8 7 5 10 10 O 1.21600 * 120.00275 * 127.39009 * 9 8 7 11 11 N 1.34777 * 119.99889 * 307.39533 * 9 8 7 12 12 C 1.46979 * 120.72184 * 4.86505 * 11 9 8 13 13 C 1.53155 * 108.44512 * 234.51668 * 12 11 9 14 14 C 1.52510 * 109.79383 * 305.47459 * 13 12 11 15 15 H 1.08996 * 108.41361 * 179.35187 * 14 13 12 16 16 O 1.42692 * 110.61641 * 298.73021 * 14 13 12 17 17 C 1.43072 * 113.87685 * 185.33500 * 16 14 13 18 18 C 1.53228 * 109.45825 * 298.37056 * 17 16 14 19 19 N 1.47176 * 108.69805 * 51.56517 * 18 17 16 20 20 C 1.36933 * 121.22528 * 129.07620 * 19 18 17 21 21 H 1.08001 * 119.99695 * 213.24229 * 20 19 18 22 22 C 1.38809 * 119.99815 * 33.24626 * 20 19 18 23 23 N 1.31612 * 120.00362 * 12.72413 * 22 20 19 24 24 Si 1.86805 * 119.99770 * 192.72809 * 22 20 19 25 25 H 1.48501 * 109.47252 * 89.99666 * 24 22 20 26 26 H 1.48498 * 109.47255 * 209.99692 * 24 22 20 27 27 H 1.48505 * 109.47121 * 329.99864 * 24 22 20 28 28 C 1.47596 * 117.54444 * 309.05694 * 19 18 17 29 29 H 1.09005 * 110.31675 * 172.32762 * 28 19 18 30 30 C 1.46792 * 120.72003 * 184.84217 * 11 9 8 31 31 H 1.08991 * 109.47634 * 59.99567 * 1 2 3 32 32 H 1.09000 * 109.47194 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46867 * 299.99280 * 1 2 3 34 34 H 1.08998 * 109.46702 * 240.00330 * 2 1 3 35 35 H 1.08997 * 109.47231 * 120.00386 * 2 1 3 36 36 H 1.08007 * 126.28261 * 179.97438 * 7 5 4 37 37 H 1.09005 * 109.64027 * 354.20103 * 12 11 9 38 38 H 1.09000 * 109.64284 * 114.82587 * 12 11 9 39 39 H 1.09007 * 109.42017 * 185.37856 * 13 12 11 40 40 H 1.09001 * 109.41731 * 65.57359 * 13 12 11 41 41 H 1.09003 * 109.47245 * 58.35964 * 17 16 14 42 42 H 1.09002 * 109.47667 * 178.36960 * 17 16 14 43 43 H 1.09001 * 109.59714 * 171.33565 * 18 17 16 44 44 H 1.09009 * 109.59601 * 291.80087 * 18 17 16 45 45 H 0.97004 * 119.99914 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.52278 * 5.81872 * 30 11 9 47 47 H 1.09002 * 109.57384 * 245.66682 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2848 2.1446 -1.0555 5 7 2.7376 3.4032 -0.6442 6 1 2.9982 4.1310 -1.2301 7 6 2.7504 3.4334 0.6980 8 6 2.3087 2.2037 1.1432 9 6 2.1601 1.7834 2.5485 10 8 1.1048 1.3200 2.9363 11 7 3.1939 1.9129 3.4035 12 6 4.4401 2.5677 2.9811 13 6 5.6055 1.6110 3.2500 14 6 5.5902 1.1766 4.7119 15 1 6.4199 0.4890 4.8754 16 8 5.7467 2.3039 5.5726 17 6 5.8633 1.9634 6.9574 18 6 4.5848 1.2558 7.4184 19 7 4.2955 0.1516 6.4894 20 6 4.0512 -1.1157 6.9471 21 1 4.3603 -1.9698 6.3628 22 6 3.4063 -1.3025 8.1621 23 7 2.8096 -0.2892 8.7530 24 14 3.3855 -2.9922 8.9583 25 1 4.5672 -3.1356 9.8462 26 1 2.1439 -3.1474 9.7579 27 1 3.4291 -4.0369 7.9038 28 6 4.2779 0.4606 5.0463 29 1 4.1883 -0.4565 4.4639 30 6 3.0995 1.4036 4.7769 31 1 -0.3634 0.5138 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.0511 4.2668 1.3157 37 1 4.3915 2.7957 1.9162 38 1 4.5820 3.4869 3.5495 39 1 6.5466 2.1158 3.0319 40 1 5.5091 0.7337 2.6103 41 1 6.7166 1.2999 7.0978 42 1 6.0081 2.8708 7.5438 43 1 4.7283 0.8599 8.4238 44 1 3.7547 1.9624 7.4163 45 1 2.3593 -0.4197 9.6022 46 1 2.1626 0.8603 4.9003 47 1 3.1322 2.2371 5.4786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074284915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:44 Heat of formation + Delta-G solvation = 23.507794 kcal Electronic energy + Delta-G solvation = -30604.487059 eV Core-core repulsion = 26596.771361 eV Total energy + Delta-G solvation = -4007.715698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.56787 -39.76722 -38.24706 -35.68431 -34.60775 -34.26680 -31.91090 -31.49899 -30.49122 -30.35121 -29.28056 -27.31947 -25.12004 -24.13200 -23.83190 -22.89030 -22.39946 -21.31283 -20.27810 -19.28185 -18.51960 -17.65108 -16.92630 -16.52633 -15.47913 -15.43356 -15.33265 -15.06464 -14.93526 -14.67230 -14.43072 -14.08494 -13.91037 -13.56124 -13.49779 -13.11113 -13.01918 -12.65824 -12.40743 -12.27364 -12.16424 -11.95710 -11.48090 -11.35311 -11.25173 -11.04559 -10.95948 -10.75836 -10.69157 -10.60804 -10.24494 -10.16277 -10.06710 -9.64385 -9.58576 -9.55055 -8.96454 -8.76472 -8.57303 -8.16792 -6.66290 -5.86220 -3.37384 1.52339 2.24099 2.56301 3.14854 3.34410 3.41560 3.42908 3.51088 4.32417 4.39217 4.42104 4.57202 4.96610 4.98960 5.06112 5.20653 5.31732 5.36696 5.38934 5.42665 5.47287 5.50386 5.61029 5.66460 5.78892 5.83095 5.96785 6.03830 6.08109 6.09169 6.10064 6.16650 6.29995 6.32810 6.38323 6.41697 6.44671 6.73557 6.80517 6.95803 7.01986 7.07449 7.43578 7.45263 7.73535 7.84451 7.88541 8.35019 8.58693 9.09786 9.69401 10.31033 11.21164 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.003833 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.857617 B = 7303.555242 C = 8564.340441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.129 3.871 4 N -0.298 5.298 5 N -0.466 5.466 6 H 0.442 0.558 7 C 0.092 3.908 8 C -0.267 4.267 9 C 0.587 3.413 10 O -0.535 6.535 11 N -0.600 5.600 12 C 0.110 3.890 13 C -0.122 4.122 14 C 0.081 3.919 15 H 0.050 0.950 16 O -0.387 6.387 17 C 0.039 3.961 18 C 0.141 3.859 19 N -0.583 5.583 20 C -0.261 4.261 21 H 0.066 0.934 22 C 0.013 3.987 23 N -0.897 5.897 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.277 1.277 28 C 0.135 3.865 29 H 0.075 0.925 30 C 0.110 3.890 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.185 0.815 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.031 0.969 45 H 0.256 0.744 46 H 0.090 0.910 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.289 8.624 -15.929 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.038 4.038 4 N -0.121 5.121 5 N -0.172 5.172 6 H 0.286 0.714 7 C -0.059 4.059 8 C -0.282 4.282 9 C 0.373 3.627 10 O -0.411 6.411 11 N -0.334 5.334 12 C -0.014 4.014 13 C -0.161 4.161 14 C 0.021 3.979 15 H 0.068 0.932 16 O -0.307 6.307 17 C -0.039 4.039 18 C 0.016 3.984 19 N -0.305 5.305 20 C -0.391 4.391 21 H 0.083 0.917 22 C -0.187 4.187 23 N -0.539 5.539 24 Si 0.735 3.265 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.202 1.202 28 C 0.026 3.974 29 H 0.093 0.907 30 C -0.014 4.014 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.202 0.798 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.049 0.951 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.628 8.557 -16.831 19.227 hybrid contribution 0.218 -0.465 1.325 1.421 sum 3.846 8.093 -15.506 17.909 Atomic orbital electron populations 1.21690 0.93633 1.02203 1.02693 1.20012 0.96921 0.88015 1.03459 1.22382 0.95767 0.97000 0.88697 1.77092 1.21807 0.90806 1.22383 1.46037 1.52320 1.13448 1.05346 0.71408 1.23063 0.98328 0.99143 0.85397 1.20344 1.17091 0.95900 0.94898 1.17336 0.83487 0.78360 0.83494 1.90780 1.26830 1.45799 1.77741 1.48183 1.13860 1.57938 1.13375 1.21749 0.83633 0.96038 0.99958 1.21795 0.98551 1.00245 0.95514 1.22224 0.98296 0.88327 0.89028 0.93188 1.87706 1.94125 1.31509 1.17315 1.23321 0.99748 0.99297 0.81489 1.21373 0.92071 0.89544 0.95429 1.44204 1.81265 1.06532 0.98512 1.19107 1.32370 0.83194 1.04386 0.91657 1.25236 0.96252 0.97282 0.99919 1.69990 1.35895 1.30248 1.17783 0.86259 0.77104 0.83870 0.79312 1.21334 1.21568 1.20244 1.21632 0.91658 0.95802 0.88279 0.90726 1.22294 1.01615 0.98242 0.79231 0.92991 0.91959 0.91078 0.90382 0.89557 0.79776 0.90292 0.90790 0.90695 0.90519 0.94156 0.90198 0.89592 0.95109 0.93396 0.89174 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 37.16 0.37 -1.38 16 2 C -0.04 -0.56 6.33 -27.88 -0.18 -0.73 16 3 C 0.13 1.73 6.52 -82.02 -0.53 1.20 16 4 N -0.30 -3.68 12.63 33.89 0.43 -3.25 16 5 N -0.47 -4.13 7.29 30.85 0.22 -3.90 16 6 H 0.44 2.18 8.96 -182.72 -1.64 0.54 16 7 C 0.09 0.89 9.70 -16.56 -0.16 0.73 16 8 C -0.27 -3.64 5.09 -105.07 -0.54 -4.17 16 9 C 0.59 9.98 7.25 -12.52 -0.09 9.89 16 10 O -0.53 -11.18 16.22 5.28 0.09 -11.09 16 11 N -0.60 -9.84 2.96 -174.05 -0.52 -10.35 16 12 C 0.11 1.39 5.83 -3.70 -0.02 1.37 16 13 C -0.12 -1.62 5.82 -26.90 -0.16 -1.78 16 14 C 0.08 1.39 2.72 -26.88 -0.07 1.32 16 15 H 0.05 0.90 8.13 -51.93 -0.42 0.47 16 16 O -0.39 -6.98 9.59 -35.23 -0.34 -7.32 16 17 C 0.04 0.73 6.98 37.28 0.26 0.99 16 18 C 0.14 3.22 4.86 -3.56 -0.02 3.21 16 19 N -0.58 -14.05 2.68 -163.86 -0.44 -14.49 16 20 C -0.26 -6.97 9.64 -15.06 -0.15 -7.11 16 21 H 0.07 1.73 7.86 -52.49 -0.41 1.32 16 22 C 0.01 0.36 5.01 -17.43 -0.09 0.28 16 23 N -0.90 -25.36 11.42 55.49 0.63 -24.73 16 24 Si 0.91 21.34 29.57 -169.99 -5.03 16.31 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 C 0.13 2.76 3.03 -67.07 -0.20 2.56 16 29 H 0.07 1.58 8.00 -51.93 -0.42 1.17 16 30 C 0.11 2.22 5.61 -3.72 -0.02 2.20 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.03 7.82 -51.93 -0.41 0.63 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.17 8.01 -51.93 -0.42 0.75 16 36 H 0.19 1.18 7.76 -52.48 -0.41 0.77 16 37 H 0.08 0.81 4.67 -51.93 -0.24 0.57 16 38 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.09 2.16 6.55 -51.93 -0.34 1.82 16 44 H 0.03 0.75 7.17 -51.92 -0.37 0.38 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 46 H 0.09 2.14 7.02 -51.93 -0.36 1.77 16 47 H 0.07 1.46 6.56 -51.93 -0.34 1.12 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -32.76 369.70 -9.25 -42.02 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.28 Total: 2.67 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -1.59 Total: 8.56 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.33 Total: -56.72 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.25 Total: -18.41 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.76 -9.25 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074284915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.524 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds