Wall clock time and date at job start Tue Mar 31 2020 17:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46890 * 2 1 4 4 N 1.30444 * 125.98781 * 270.16922 * 3 2 1 5 5 N 1.39940 * 108.89685 * 180.26638 * 4 3 2 6 6 H 0.96997 * 125.75177 * 179.73705 * 5 4 3 7 7 C 1.34261 * 108.48588 * 359.74230 * 5 4 3 8 8 C 1.38040 * 107.41912 * 359.97438 * 7 5 4 9 9 C 1.47432 * 126.41323 * 179.97438 * 8 7 5 10 10 O 1.21600 * 120.00275 * 127.39009 * 9 8 7 11 11 N 1.34777 * 119.99889 * 307.39533 * 9 8 7 12 12 C 1.46979 * 120.72184 * 4.86505 * 11 9 8 13 13 C 1.53155 * 108.44512 * 234.51668 * 12 11 9 14 14 C 1.52510 * 109.79383 * 305.47459 * 13 12 11 15 15 H 1.08996 * 108.41361 * 179.35187 * 14 13 12 16 16 O 1.42692 * 110.61641 * 298.73021 * 14 13 12 17 17 C 1.43072 * 113.87685 * 185.33500 * 16 14 13 18 18 C 1.53228 * 109.45825 * 298.37056 * 17 16 14 19 19 N 1.47176 * 108.69805 * 51.56517 * 18 17 16 20 20 C 1.36933 * 121.22528 * 129.07620 * 19 18 17 21 21 H 1.08001 * 119.99695 * 213.24229 * 20 19 18 22 22 C 1.38809 * 119.99815 * 33.24626 * 20 19 18 23 23 N 1.31612 * 120.00362 * 12.72413 * 22 20 19 24 24 Si 1.86805 * 119.99770 * 192.72809 * 22 20 19 25 25 H 1.48501 * 109.47252 * 89.99666 * 24 22 20 26 26 H 1.48498 * 109.47255 * 209.99692 * 24 22 20 27 27 H 1.48505 * 109.47121 * 329.99864 * 24 22 20 28 28 C 1.47596 * 117.54444 * 309.05694 * 19 18 17 29 29 H 1.09005 * 110.31675 * 172.32762 * 28 19 18 30 30 C 1.46792 * 120.72003 * 184.84217 * 11 9 8 31 31 H 1.08991 * 109.47634 * 59.99567 * 1 2 3 32 32 H 1.09000 * 109.47194 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46867 * 299.99280 * 1 2 3 34 34 H 1.08998 * 109.46702 * 240.00330 * 2 1 3 35 35 H 1.08997 * 109.47231 * 120.00386 * 2 1 3 36 36 H 1.08007 * 126.28261 * 179.97438 * 7 5 4 37 37 H 1.09005 * 109.64027 * 354.20103 * 12 11 9 38 38 H 1.09000 * 109.64284 * 114.82587 * 12 11 9 39 39 H 1.09007 * 109.42017 * 185.37856 * 13 12 11 40 40 H 1.09001 * 109.41731 * 65.57359 * 13 12 11 41 41 H 1.09003 * 109.47245 * 58.35964 * 17 16 14 42 42 H 1.09002 * 109.47667 * 178.36960 * 17 16 14 43 43 H 1.09001 * 109.59714 * 171.33565 * 18 17 16 44 44 H 1.09009 * 109.59601 * 291.80087 * 18 17 16 45 45 H 0.97004 * 119.99914 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.52278 * 5.81872 * 30 11 9 47 47 H 1.09002 * 109.57384 * 245.66682 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2848 2.1446 -1.0555 5 7 2.7376 3.4032 -0.6442 6 1 2.9982 4.1310 -1.2301 7 6 2.7504 3.4334 0.6980 8 6 2.3087 2.2037 1.1432 9 6 2.1601 1.7834 2.5485 10 8 1.1048 1.3200 2.9363 11 7 3.1939 1.9129 3.4035 12 6 4.4401 2.5677 2.9811 13 6 5.6055 1.6110 3.2500 14 6 5.5902 1.1766 4.7119 15 1 6.4199 0.4890 4.8754 16 8 5.7467 2.3039 5.5726 17 6 5.8633 1.9634 6.9574 18 6 4.5848 1.2558 7.4184 19 7 4.2955 0.1516 6.4894 20 6 4.0512 -1.1157 6.9471 21 1 4.3603 -1.9698 6.3628 22 6 3.4063 -1.3025 8.1621 23 7 2.8096 -0.2892 8.7530 24 14 3.3855 -2.9922 8.9583 25 1 4.5672 -3.1356 9.8462 26 1 2.1439 -3.1474 9.7579 27 1 3.4291 -4.0369 7.9038 28 6 4.2779 0.4606 5.0463 29 1 4.1883 -0.4565 4.4639 30 6 3.0995 1.4036 4.7769 31 1 -0.3634 0.5138 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.0511 4.2668 1.3157 37 1 4.3915 2.7957 1.9162 38 1 4.5820 3.4869 3.5495 39 1 6.5466 2.1158 3.0319 40 1 5.5091 0.7337 2.6103 41 1 6.7166 1.2999 7.0978 42 1 6.0081 2.8708 7.5438 43 1 4.7283 0.8599 8.4238 44 1 3.7547 1.9624 7.4163 45 1 2.3593 -0.4197 9.6022 46 1 2.1626 0.8603 4.9003 47 1 3.1322 2.2371 5.4786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074284915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:43 Heat of formation + Delta-G solvation = 0.329309 kcal Electronic energy + Delta-G solvation = -30605.492153 eV Core-core repulsion = 26596.771361 eV Total energy + Delta-G solvation = -4008.720792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.51970 -41.17740 -39.68817 -37.08565 -36.39739 -35.21802 -33.56597 -33.07215 -31.74509 -31.27337 -30.66437 -29.10207 -26.47956 -25.62002 -25.05446 -24.44808 -23.56343 -22.74589 -21.41405 -20.38348 -19.88026 -18.93469 -18.64508 -17.80520 -17.06455 -16.91525 -16.70524 -16.54748 -16.17717 -15.89880 -15.78721 -15.42303 -15.11781 -14.92326 -14.85980 -14.73518 -14.31499 -14.00540 -13.81979 -13.59713 -13.43059 -13.24509 -13.03792 -12.83693 -12.64796 -12.45127 -12.42292 -12.26281 -12.20957 -12.09525 -11.88720 -11.70422 -11.62474 -11.17943 -10.91988 -10.70770 -10.51469 -10.48921 -9.79413 -9.55233 -8.61073 -7.92052 -5.46958 0.67329 1.17768 1.44134 1.45563 1.54493 1.75052 1.95694 2.24590 2.47010 2.91364 3.23895 3.42427 3.49581 3.73576 3.84654 4.04480 4.05471 4.16524 4.18059 4.23763 4.32189 4.41582 4.45917 4.50303 4.52666 4.55213 4.62240 4.66597 4.68556 4.83480 4.89390 4.94698 5.00998 5.01851 5.08296 5.11006 5.24471 5.30527 5.32042 5.41302 5.53749 5.58069 5.62898 6.30931 6.31205 6.37551 6.51430 6.61429 7.06803 7.26719 7.71139 8.29396 9.12165 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.003833 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.857617 B = 7303.555242 C = 8564.340441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.046 4.046 3 C 0.118 3.882 4 N -0.312 5.312 5 N -0.442 5.442 6 H 0.462 0.538 7 C 0.126 3.874 8 C -0.304 4.304 9 C 0.587 3.413 10 O -0.587 6.587 11 N -0.598 5.598 12 C 0.109 3.891 13 C -0.116 4.116 14 C 0.087 3.913 15 H 0.048 0.952 16 O -0.380 6.380 17 C 0.052 3.948 18 C 0.149 3.851 19 N -0.601 5.601 20 C -0.272 4.272 21 H 0.063 0.937 22 C -0.037 4.037 23 N -0.928 5.928 24 Si 0.967 3.033 25 H -0.279 1.279 26 H -0.295 1.295 27 H -0.271 1.271 28 C 0.132 3.868 29 H 0.060 0.940 30 C 0.130 3.870 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.227 0.773 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.110 0.890 43 H 0.057 0.943 44 H 0.004 0.996 45 H 0.252 0.748 46 H 0.041 0.959 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 10.427 -18.577 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.086 4.086 3 C -0.049 4.049 4 N -0.135 5.135 5 N -0.149 5.149 6 H 0.311 0.689 7 C -0.027 4.027 8 C -0.319 4.319 9 C 0.376 3.624 10 O -0.468 6.468 11 N -0.331 5.331 12 C -0.013 4.013 13 C -0.154 4.154 14 C 0.027 3.973 15 H 0.066 0.934 16 O -0.299 6.299 17 C -0.025 4.025 18 C 0.023 3.977 19 N -0.324 5.324 20 C -0.402 4.402 21 H 0.080 0.920 22 C -0.234 4.234 23 N -0.572 5.572 24 Si 0.795 3.205 25 H -0.205 1.205 26 H -0.221 1.221 27 H -0.195 1.195 28 C 0.024 3.976 29 H 0.078 0.922 30 C 0.005 3.995 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.243 0.757 37 H 0.132 0.868 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.128 0.872 43 H 0.075 0.925 44 H 0.022 0.978 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.104 10.397 -19.558 22.976 hybrid contribution -0.563 -0.972 2.068 2.353 sum 5.541 9.425 -17.491 20.627 Atomic orbital electron populations 1.21617 0.93736 1.02683 1.01521 1.19999 0.96851 0.88393 1.03338 1.22421 0.96197 0.97343 0.88972 1.77055 1.22363 0.92007 1.22054 1.46059 1.50379 1.12945 1.05538 0.68876 1.23509 0.95225 0.98280 0.85717 1.20077 1.21021 0.98184 0.92609 1.17856 0.82552 0.77180 0.84805 1.90752 1.28997 1.48145 1.78894 1.48170 1.15444 1.57866 1.11570 1.22052 0.81289 0.95790 1.02134 1.21834 1.00456 1.01073 0.92060 1.22225 0.95473 0.88080 0.91499 0.93404 1.87722 1.93777 1.31554 1.16821 1.23155 0.96976 1.00201 0.82210 1.21213 0.93478 0.88790 0.94193 1.44430 1.81640 1.06127 1.00237 1.19385 1.31790 0.84471 1.04540 0.91982 1.25948 0.96292 1.00562 1.00585 1.70142 1.37089 1.32058 1.17940 0.85282 0.76821 0.80060 0.78340 1.20507 1.22149 1.19549 1.21754 0.93923 0.95743 0.86140 0.92203 1.21676 0.99183 0.97036 0.81609 0.91994 0.90744 0.94169 0.88453 0.91585 0.75695 0.86834 0.89702 0.87044 0.89842 0.93613 0.87233 0.92480 0.97798 0.93891 0.94052 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.89 71.98 0.71 -2.70 16 2 C -0.05 -1.16 6.33 29.85 0.19 -0.97 16 3 C 0.12 3.00 6.52 43.51 0.28 3.28 16 4 N -0.31 -6.79 12.63 -46.68 -0.59 -7.38 16 5 N -0.44 -5.88 7.29 -56.31 -0.41 -6.29 16 6 H 0.46 2.20 8.96 -213.43 -1.91 0.28 16 7 C 0.13 1.89 9.70 84.27 0.82 2.71 16 8 C -0.30 -7.74 5.09 -20.15 -0.10 -7.84 16 9 C 0.59 20.21 7.25 86.67 0.63 20.84 16 10 O -0.59 -26.17 16.22 -4.03 -0.07 -26.24 16 11 N -0.60 -19.42 2.96 -822.81 -2.44 -21.86 16 12 C 0.11 2.38 5.83 86.34 0.50 2.89 16 13 C -0.12 -2.64 5.82 30.48 0.18 -2.47 16 14 C 0.09 2.84 2.72 30.50 0.08 2.93 16 15 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 16 O -0.38 -12.83 9.59 -148.98 -1.43 -14.26 16 17 C 0.05 1.89 6.98 72.06 0.50 2.39 16 18 C 0.15 7.02 4.86 86.33 0.42 7.44 16 19 N -0.60 -30.16 2.68 -672.34 -1.80 -31.96 16 20 C -0.27 -15.09 9.64 84.03 0.81 -14.28 16 21 H 0.06 3.41 7.86 -2.91 -0.02 3.38 16 22 C -0.04 -2.07 5.01 84.86 0.42 -1.64 16 23 N -0.93 -55.04 11.42 21.65 0.25 -54.79 16 24 Si 0.97 45.18 29.57 68.60 2.03 47.21 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 27 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 28 C 0.13 5.57 3.03 44.95 0.14 5.70 16 29 H 0.06 2.66 8.00 -2.38 -0.02 2.64 16 30 C 0.13 5.53 5.61 86.43 0.48 6.01 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.04 1.24 7.82 -2.38 -0.02 1.22 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 1.88 8.01 -2.39 -0.02 1.86 16 36 H 0.23 1.48 7.76 -2.91 -0.02 1.46 16 37 H 0.11 1.74 4.67 -2.38 -0.01 1.73 16 38 H 0.08 1.76 7.94 -2.39 -0.02 1.74 16 39 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 43 H 0.06 3.00 6.55 -2.39 -0.02 2.98 16 44 H 0.00 0.20 7.17 -2.38 -0.02 0.19 16 45 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 46 H 0.04 2.13 7.02 -2.39 -0.02 2.12 16 47 H 0.05 2.34 6.56 -2.39 -0.02 2.32 16 Total: -1.00 -77.83 369.70 0.70 -77.13 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -0.92 Total: 14.14 kcal Atomic # 6 Polarization: 18.21 SS G_CDS: 6.07 Total: 24.28 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -4.99 Total: -122.27 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -1.49 Total: -40.50 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -77.83 0.70 -77.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074284915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.462 kcal (2) G-P(sol) polarization free energy of solvation -77.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds