Wall clock time and date at job start Tue Mar 31 2020 18:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47059 * 2 1 4 4 C 1.34669 * 126.59215 * 275.04451 * 3 2 1 5 5 N 1.34128 * 108.02396 * 179.73975 * 4 3 2 6 6 C 1.30503 * 109.25214 * 0.37285 * 5 4 3 7 7 C 1.50701 * 125.64913 * 179.88740 * 6 5 4 8 8 C 1.50701 * 109.47250 * 304.69499 * 7 6 5 9 9 O 1.21277 * 119.99901 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99838 * 179.97438 * 8 7 6 11 11 C 1.44960 * 117.33652 * 357.47781 * 10 8 7 12 12 C 1.51958 * 111.93805 * 203.72958 * 11 10 8 13 13 O 1.41324 * 111.60775 * 319.70301 * 12 11 10 14 14 C 1.40852 * 118.30789 * 56.89255 * 13 12 11 15 15 H 1.09004 * 109.54078 * 187.74141 * 14 13 12 16 16 C 1.53923 * 110.46118 * 68.19317 * 14 13 12 17 17 N 1.46769 * 107.62177 * 221.67393 * 16 14 13 18 18 C 1.36932 * 125.36522 * 178.65994 * 17 16 14 19 19 H 1.08003 * 120.00109 * 179.41579 * 18 17 16 20 20 C 1.38810 * 119.99958 * 359.69800 * 18 17 16 21 21 N 1.31619 * 119.99877 * 359.72064 * 20 18 17 22 22 Si 1.86806 * 120.00068 * 179.72401 * 20 18 17 23 23 H 1.48493 * 109.47033 * 60.00010 * 22 20 18 24 24 H 1.48503 * 109.46814 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46842 * 299.99907 * 22 20 18 26 26 C 1.46876 * 109.27359 * 358.39629 * 17 16 14 27 27 C 1.44544 * 117.33456 * 177.45896 * 10 8 7 28 28 H 1.09001 * 109.64669 * 285.98818 * 27 10 8 29 29 N 1.35039 * 108.70046 * 359.62970 * 6 5 4 30 30 H 0.97007 * 126.39905 * 180.25347 * 29 6 5 31 31 H 1.08993 * 109.47697 * 59.99989 * 1 2 3 32 32 H 1.09000 * 109.46974 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46987 * 299.99358 * 1 2 3 34 34 H 1.09005 * 109.46968 * 240.00126 * 2 1 3 35 35 H 1.09000 * 109.47689 * 119.99666 * 2 1 3 36 36 H 1.08002 * 125.99137 * 359.97438 * 4 3 2 37 37 H 1.08998 * 109.47195 * 184.69379 * 7 6 5 38 38 H 1.09001 * 109.46861 * 64.69425 * 7 6 5 39 39 H 1.08993 * 108.99205 * 324.36833 * 11 10 8 40 40 H 1.09005 * 108.98513 * 83.10503 * 11 10 8 41 41 H 1.09002 * 109.05002 * 80.25011 * 12 11 10 42 42 H 1.08997 * 109.05459 * 199.22635 * 12 11 10 43 43 H 1.09001 * 109.95294 * 102.07724 * 16 14 13 44 44 H 1.09008 * 109.70216 * 341.12656 * 16 14 13 45 45 H 0.96998 * 119.99778 * 180.02562 * 21 20 18 46 46 H 1.09005 * 110.06733 * 137.29335 * 26 17 16 47 47 H 1.08999 * 110.06981 * 258.76125 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2102 2.2094 -1.0771 5 7 2.6640 3.3975 -0.6511 6 6 2.7815 3.3725 0.6484 7 6 3.2632 4.5122 1.5088 8 6 4.6178 4.9661 1.0291 9 8 5.1407 4.4179 0.0821 10 7 5.2480 5.9814 1.6525 11 6 4.5466 6.6317 2.7417 12 6 5.0449 8.0486 2.9722 13 8 6.4503 8.1326 2.8488 14 6 7.0413 7.7094 1.6423 15 1 8.1260 7.7051 1.7495 16 6 6.6658 8.6646 0.4952 17 7 6.3705 7.8455 -0.6863 18 6 5.9715 8.3267 -1.9047 19 1 5.7860 7.6438 -2.7206 20 6 5.8113 9.6926 -2.0928 21 7 6.0375 10.5248 -1.0985 22 14 5.2745 10.3496 -3.7571 23 1 3.9488 9.7810 -4.1095 24 1 5.1773 11.8303 -3.6967 25 1 6.2701 9.9599 -4.7876 26 6 6.5764 6.4288 -0.3579 27 6 6.5684 6.3326 1.1807 28 1 7.2858 5.5785 1.5043 29 7 2.3946 2.1582 1.0948 30 1 2.3764 1.8636 2.0189 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0174 1.9347 -2.1036 37 1 3.3371 4.1797 2.5442 38 1 2.5579 5.3406 1.4427 39 1 3.4822 6.6636 2.5093 40 1 4.6918 6.0521 3.6533 41 1 4.5832 8.7117 2.2405 42 1 4.7570 8.3686 3.9736 43 1 7.4984 9.3349 0.2817 44 1 5.7852 9.2440 0.7728 45 1 5.9251 11.4793 -1.2299 46 1 5.7685 5.8271 -0.7745 47 1 7.5353 6.0895 -0.7497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083110292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:18 Heat of formation + Delta-G solvation = 32.214954 kcal Electronic energy + Delta-G solvation = -30055.931395 eV Core-core repulsion = 26048.593268 eV Total energy + Delta-G solvation = -4007.338127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.15976 -40.65073 -38.29972 -35.84841 -34.76216 -34.37358 -32.60728 -32.32834 -31.18131 -29.92818 -27.97720 -27.66602 -26.56479 -24.50213 -23.58234 -23.20205 -21.65756 -20.96400 -20.42254 -19.64241 -18.47012 -17.47617 -17.42367 -16.72015 -16.47836 -15.74716 -15.35020 -15.09844 -14.91183 -14.62593 -14.55608 -14.33870 -13.94675 -13.81136 -13.64464 -13.47784 -13.02486 -12.84391 -12.65272 -12.47898 -12.07842 -12.02809 -11.91862 -11.70161 -11.48554 -11.30114 -11.00575 -10.82740 -10.59368 -10.54531 -10.34860 -10.03406 -9.94910 -9.75421 -9.62512 -9.28493 -8.82091 -8.50166 -8.22127 -8.14673 -6.70138 -5.62069 -2.94468 1.93599 2.78239 2.89490 3.13738 3.37274 3.49184 3.51973 3.54707 4.13112 4.28247 4.57296 4.58411 4.66158 4.68089 4.81841 4.90747 4.99148 5.09670 5.19764 5.26790 5.29646 5.36017 5.41528 5.47273 5.50162 5.55221 5.61168 5.71109 5.74667 5.80069 5.85613 5.93229 6.03628 6.12818 6.21821 6.35416 6.60388 6.77459 6.93488 7.27403 7.29286 7.46864 7.57053 7.61646 7.81676 7.95538 8.19623 8.34418 8.48781 9.32327 9.92533 10.55750 11.49445 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.003571 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.290504 B = 7838.010635 C = 9391.532095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C -0.029 4.029 4 C -0.018 4.018 5 N -0.451 5.451 6 C 0.221 3.779 7 C -0.054 4.054 8 C 0.512 3.488 9 O -0.498 6.498 10 N -0.586 5.586 11 C 0.078 3.922 12 C 0.058 3.942 13 O -0.370 6.370 14 C 0.067 3.933 15 H 0.109 0.891 16 C 0.152 3.848 17 N -0.601 5.601 18 C -0.217 4.217 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.927 5.927 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.109 3.891 27 C 0.114 3.886 28 H 0.069 0.931 29 N -0.564 5.564 30 H 0.413 0.587 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.167 0.833 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.251 0.749 46 H 0.091 0.909 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.230 -17.380 12.698 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C -0.145 4.145 4 C -0.167 4.167 5 N -0.169 5.169 6 C -0.043 4.043 7 C -0.095 4.095 8 C 0.297 3.703 9 O -0.372 6.372 10 N -0.321 5.321 11 C -0.046 4.046 12 C -0.020 4.020 13 O -0.288 6.288 14 C 0.008 3.992 15 H 0.127 0.873 16 C 0.027 3.973 17 N -0.328 5.328 18 C -0.346 4.346 19 H 0.096 0.904 20 C -0.207 4.207 21 N -0.576 5.576 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.017 4.017 27 C 0.010 3.990 28 H 0.087 0.913 29 N -0.168 5.168 30 H 0.250 0.750 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.184 0.816 37 H 0.121 0.879 38 H 0.136 0.864 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.108 0.892 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.664 -16.670 11.691 22.128 hybrid contribution -0.641 -0.387 -0.041 0.750 sum -9.306 -17.057 11.650 22.655 Atomic orbital electron populations 1.21778 0.94556 1.01738 1.02448 1.19951 0.95894 0.89217 1.03266 1.21177 1.09598 0.96314 0.87367 1.22136 1.05607 0.90381 0.98591 1.70326 1.15948 1.22864 1.07750 1.22258 1.04177 0.86664 0.91184 1.20018 0.96608 0.95246 0.97663 1.20047 0.86419 0.80612 0.83190 1.90675 1.66368 1.54800 1.25338 1.46549 1.17623 1.33643 1.34275 1.21653 0.97056 0.96070 0.89808 1.22209 0.82899 0.94226 1.02637 1.86865 1.20009 1.85032 1.36861 1.22960 0.97397 0.92490 0.86350 0.87298 1.21681 1.00685 0.91087 0.83837 1.44221 1.79766 0.99621 1.09226 1.19041 1.37496 0.90838 0.87203 0.90415 1.24767 1.02195 0.95849 0.97850 1.69941 1.55782 1.01948 1.29907 0.86188 0.78599 0.77571 0.83414 1.21186 1.21719 1.21202 1.22116 1.00955 0.88347 0.90299 1.21651 0.82626 0.97227 0.97531 0.91310 1.43066 1.51886 1.12445 1.09445 0.74970 0.91977 0.92183 0.92978 0.89489 0.91480 0.81609 0.87888 0.86393 0.90115 0.91897 0.91895 0.88037 0.93239 0.92632 0.93863 0.89204 0.95926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.15 0.37 -0.56 16 2 C -0.04 -0.32 6.49 -27.89 -0.18 -0.50 16 3 C -0.03 -0.32 6.49 -81.60 -0.53 -0.85 16 4 C -0.02 -0.26 11.79 -17.81 -0.21 -0.47 16 5 N -0.45 -7.89 10.60 -10.81 -0.11 -8.00 16 6 C 0.22 3.10 6.95 -155.42 -1.08 2.02 16 7 C -0.05 -0.64 4.88 -29.03 -0.14 -0.79 16 8 C 0.51 8.63 7.13 -10.98 -0.08 8.56 16 9 O -0.50 -10.47 12.45 5.56 0.07 -10.40 16 10 N -0.59 -9.67 3.09 -168.83 -0.52 -10.19 16 11 C 0.08 0.97 5.87 -5.40 -0.03 0.94 16 12 C 0.06 0.83 6.72 36.63 0.25 1.08 16 13 O -0.37 -6.54 10.24 -34.45 -0.35 -6.89 16 14 C 0.07 1.31 3.81 -26.40 -0.10 1.21 16 15 H 0.11 1.97 8.14 -51.93 -0.42 1.54 16 16 C 0.15 3.78 5.03 -3.41 -0.02 3.77 16 17 N -0.60 -16.16 3.39 -171.43 -0.58 -16.74 16 18 C -0.22 -6.41 10.25 -15.06 -0.15 -6.57 16 19 H 0.08 2.29 7.83 -52.48 -0.41 1.87 16 20 C -0.01 -0.33 5.48 -17.43 -0.10 -0.43 16 21 N -0.93 -27.82 10.26 55.49 0.57 -27.25 16 22 Si 0.91 23.16 29.55 -169.99 -5.02 18.14 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 C 0.11 2.54 6.29 -3.23 -0.02 2.52 16 27 C 0.11 2.18 3.41 -68.51 -0.23 1.95 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 N -0.56 -5.89 6.15 -6.54 -0.04 -5.93 16 30 H 0.41 2.74 8.96 -40.82 -0.37 2.37 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.17 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.10 0.78 8.07 -51.93 -0.42 0.36 16 38 H 0.12 1.29 7.14 -51.93 -0.37 0.92 16 39 H 0.08 0.83 6.31 -51.93 -0.33 0.50 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 1.08 6.84 -51.93 -0.35 0.73 16 42 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 1.36 7.51 -51.93 -0.39 0.97 16 44 H 0.06 1.51 5.74 -51.92 -0.30 1.22 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.09 2.30 4.81 -52.39 -0.25 2.05 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -37.88 368.58 -9.68 -47.56 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.98 Total: 2.28 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -2.26 Total: 11.88 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -0.69 Total: -68.11 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.28 Total: -17.30 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.88 -9.68 -47.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083110292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.773 kcal (2) G-P(sol) polarization free energy of solvation -37.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds