Wall clock time and date at job start Tue Mar 31 2020 18:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47059 * 2 1 4 4 C 1.34669 * 126.59215 * 275.04451 * 3 2 1 5 5 N 1.34128 * 108.02396 * 179.73975 * 4 3 2 6 6 C 1.30503 * 109.25214 * 0.37285 * 5 4 3 7 7 C 1.50701 * 125.64913 * 179.88740 * 6 5 4 8 8 C 1.50701 * 109.47250 * 304.69499 * 7 6 5 9 9 O 1.21277 * 119.99901 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99838 * 179.97438 * 8 7 6 11 11 C 1.44960 * 117.33652 * 357.47781 * 10 8 7 12 12 C 1.51958 * 111.93805 * 203.72958 * 11 10 8 13 13 O 1.41324 * 111.60775 * 319.70301 * 12 11 10 14 14 C 1.40852 * 118.30789 * 56.89255 * 13 12 11 15 15 H 1.09004 * 109.54078 * 187.74141 * 14 13 12 16 16 C 1.53923 * 110.46118 * 68.19317 * 14 13 12 17 17 N 1.46769 * 107.62177 * 221.67393 * 16 14 13 18 18 C 1.36932 * 125.36522 * 178.65994 * 17 16 14 19 19 H 1.08003 * 120.00109 * 179.41579 * 18 17 16 20 20 C 1.38810 * 119.99958 * 359.69800 * 18 17 16 21 21 N 1.31619 * 119.99877 * 359.72064 * 20 18 17 22 22 Si 1.86806 * 120.00068 * 179.72401 * 20 18 17 23 23 H 1.48493 * 109.47033 * 60.00010 * 22 20 18 24 24 H 1.48503 * 109.46814 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46842 * 299.99907 * 22 20 18 26 26 C 1.46876 * 109.27359 * 358.39629 * 17 16 14 27 27 C 1.44544 * 117.33456 * 177.45896 * 10 8 7 28 28 H 1.09001 * 109.64669 * 285.98818 * 27 10 8 29 29 N 1.35039 * 108.70046 * 359.62970 * 6 5 4 30 30 H 0.97007 * 126.39905 * 180.25347 * 29 6 5 31 31 H 1.08993 * 109.47697 * 59.99989 * 1 2 3 32 32 H 1.09000 * 109.46974 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46987 * 299.99358 * 1 2 3 34 34 H 1.09005 * 109.46968 * 240.00126 * 2 1 3 35 35 H 1.09000 * 109.47689 * 119.99666 * 2 1 3 36 36 H 1.08002 * 125.99137 * 359.97438 * 4 3 2 37 37 H 1.08998 * 109.47195 * 184.69379 * 7 6 5 38 38 H 1.09001 * 109.46861 * 64.69425 * 7 6 5 39 39 H 1.08993 * 108.99205 * 324.36833 * 11 10 8 40 40 H 1.09005 * 108.98513 * 83.10503 * 11 10 8 41 41 H 1.09002 * 109.05002 * 80.25011 * 12 11 10 42 42 H 1.08997 * 109.05459 * 199.22635 * 12 11 10 43 43 H 1.09001 * 109.95294 * 102.07724 * 16 14 13 44 44 H 1.09008 * 109.70216 * 341.12656 * 16 14 13 45 45 H 0.96998 * 119.99778 * 180.02562 * 21 20 18 46 46 H 1.09005 * 110.06733 * 137.29335 * 26 17 16 47 47 H 1.08999 * 110.06981 * 258.76125 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2102 2.2094 -1.0771 5 7 2.6640 3.3975 -0.6511 6 6 2.7815 3.3725 0.6484 7 6 3.2632 4.5122 1.5088 8 6 4.6178 4.9661 1.0291 9 8 5.1407 4.4179 0.0821 10 7 5.2480 5.9814 1.6525 11 6 4.5466 6.6317 2.7417 12 6 5.0449 8.0486 2.9722 13 8 6.4503 8.1326 2.8488 14 6 7.0413 7.7094 1.6423 15 1 8.1260 7.7051 1.7495 16 6 6.6658 8.6646 0.4952 17 7 6.3705 7.8455 -0.6863 18 6 5.9715 8.3267 -1.9047 19 1 5.7860 7.6438 -2.7206 20 6 5.8113 9.6926 -2.0928 21 7 6.0375 10.5248 -1.0985 22 14 5.2745 10.3496 -3.7571 23 1 3.9488 9.7810 -4.1095 24 1 5.1773 11.8303 -3.6967 25 1 6.2701 9.9599 -4.7876 26 6 6.5764 6.4288 -0.3579 27 6 6.5684 6.3326 1.1807 28 1 7.2858 5.5785 1.5043 29 7 2.3946 2.1582 1.0948 30 1 2.3764 1.8636 2.0189 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0174 1.9347 -2.1036 37 1 3.3371 4.1797 2.5442 38 1 2.5579 5.3406 1.4427 39 1 3.4822 6.6636 2.5093 40 1 4.6918 6.0521 3.6533 41 1 4.5832 8.7117 2.2405 42 1 4.7570 8.3686 3.9736 43 1 7.4984 9.3349 0.2817 44 1 5.7852 9.2440 0.7728 45 1 5.9251 11.4793 -1.2299 46 1 5.7685 5.8271 -0.7745 47 1 7.5353 6.0895 -0.7497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083110292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:17 Heat of formation + Delta-G solvation = 3.711884 kcal Electronic energy + Delta-G solvation = -30057.167381 eV Core-core repulsion = 26048.593268 eV Total energy + Delta-G solvation = -4008.574113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.11253 -42.03263 -39.69944 -37.61721 -36.09046 -35.11522 -34.39007 -33.43838 -32.25602 -31.57782 -29.53025 -29.14392 -27.78865 -26.42135 -24.63843 -24.25076 -23.07411 -22.03396 -21.77671 -20.99427 -19.84432 -19.12499 -18.43798 -18.18410 -18.01447 -17.04315 -16.91234 -16.38565 -16.24923 -15.95407 -15.69832 -15.36420 -15.24561 -15.12756 -15.03232 -14.45527 -14.36873 -14.16734 -13.84612 -13.76414 -13.62464 -13.19332 -13.11367 -12.99163 -12.81180 -12.77592 -12.43894 -12.39206 -12.16377 -12.11352 -12.00616 -11.82738 -11.63765 -10.94908 -10.83849 -10.75132 -10.72663 -10.27755 -9.48974 -9.16568 -8.88708 -7.88340 -5.23867 1.01928 1.40489 1.44395 1.50932 1.60205 1.79403 2.19539 2.28703 2.45918 2.80448 3.28458 3.30751 3.45015 3.69456 3.73661 3.84053 3.92719 3.98972 4.04789 4.13798 4.16421 4.27712 4.34190 4.42820 4.45388 4.47536 4.57527 4.59944 4.71655 4.77623 4.79022 4.91112 4.96357 5.05071 5.07512 5.14858 5.36575 5.38976 5.42197 5.48142 5.64171 5.69351 5.82073 6.16525 6.28278 6.45452 6.57343 7.07659 7.23081 7.24199 7.74065 8.35424 9.20413 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.003571 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.290504 B = 7838.010635 C = 9391.532095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 C -0.003 4.003 4 C -0.064 4.064 5 N -0.516 5.516 6 C 0.206 3.794 7 C -0.043 4.043 8 C 0.503 3.497 9 O -0.549 6.549 10 N -0.591 5.591 11 C 0.071 3.929 12 C 0.049 3.951 13 O -0.371 6.371 14 C 0.085 3.915 15 H 0.125 0.875 16 C 0.163 3.837 17 N -0.618 5.618 18 C -0.243 4.243 19 H 0.067 0.933 20 C -0.059 4.059 21 N -0.947 5.947 22 Si 0.977 3.023 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.279 1.279 26 C 0.107 3.893 27 C 0.128 3.872 28 H 0.090 0.910 29 N -0.546 5.546 30 H 0.434 0.566 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.167 0.833 37 H 0.159 0.841 38 H 0.130 0.870 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.024 0.976 42 H 0.149 0.851 43 H 0.011 0.989 44 H 0.026 0.974 45 H 0.249 0.751 46 H 0.070 0.930 47 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.704 -19.288 15.706 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 C -0.120 4.120 4 C -0.212 4.212 5 N -0.235 5.235 6 C -0.059 4.059 7 C -0.084 4.084 8 C 0.291 3.709 9 O -0.427 6.427 10 N -0.326 5.326 11 C -0.050 4.050 12 C -0.028 4.028 13 O -0.288 6.288 14 C 0.026 3.974 15 H 0.143 0.857 16 C 0.038 3.962 17 N -0.345 5.345 18 C -0.372 4.372 19 H 0.085 0.915 20 C -0.252 4.252 21 N -0.595 5.595 22 Si 0.805 3.195 23 H -0.208 1.208 24 H -0.211 1.211 25 H -0.205 1.205 26 C -0.019 4.019 27 C 0.022 3.978 28 H 0.108 0.892 29 N -0.152 5.152 30 H 0.275 0.725 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.184 0.816 37 H 0.177 0.823 38 H 0.148 0.852 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.043 0.957 42 H 0.166 0.834 43 H 0.030 0.970 44 H 0.044 0.956 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -10.160 -18.595 14.767 25.828 hybrid contribution -0.225 0.181 -0.995 1.036 sum -10.385 -18.414 13.772 25.231 Atomic orbital electron populations 1.21743 0.93654 1.02861 1.01877 1.20113 0.96483 0.86732 1.04743 1.21655 1.06694 0.97230 0.86455 1.22376 1.08056 0.90797 0.99961 1.70209 1.17917 1.25074 1.10292 1.22476 1.04557 0.88193 0.90652 1.20112 0.93227 0.95148 0.99909 1.20920 0.87754 0.79904 0.82290 1.90654 1.67908 1.56594 1.27564 1.46720 1.16833 1.33823 1.35185 1.22035 0.97850 0.94864 0.90279 1.22562 0.80841 0.95273 1.04112 1.86874 1.22018 1.85028 1.34893 1.22643 0.98520 0.91114 0.85131 0.85744 1.21447 0.97853 0.91655 0.85248 1.44449 1.79510 1.01427 1.09129 1.19266 1.38251 0.91292 0.88401 0.91540 1.25568 1.02302 0.95873 1.01478 1.70156 1.56076 1.01803 1.31503 0.85184 0.78193 0.76894 0.79264 1.20766 1.21113 1.20475 1.22148 0.99552 0.86141 0.94024 1.21339 0.85123 0.97358 0.93971 0.89250 1.42953 1.50596 1.11221 1.10442 0.72452 0.93227 0.90209 0.92914 0.88828 0.89176 0.81607 0.82339 0.85188 0.87572 0.86995 0.95733 0.83370 0.97033 0.95597 0.94211 0.91266 0.96920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.89 71.98 0.71 -0.73 16 2 C -0.04 -0.49 6.49 29.85 0.19 -0.30 16 3 C 0.00 -0.07 6.49 40.95 0.27 0.20 16 4 C -0.06 -1.87 11.79 83.52 0.98 -0.89 16 5 N -0.52 -18.51 10.60 -188.13 -1.99 -20.50 16 6 C 0.21 5.49 6.95 138.13 0.96 6.45 16 7 C -0.04 -0.91 4.88 29.10 0.14 -0.77 16 8 C 0.50 16.38 7.13 87.66 0.63 17.01 16 9 O -0.55 -23.63 12.45 -3.02 -0.04 -23.67 16 10 N -0.59 -18.40 3.09 -806.45 -2.49 -20.89 16 11 C 0.07 1.50 5.87 86.32 0.51 2.00 16 12 C 0.05 1.28 6.72 71.64 0.48 1.76 16 13 O -0.37 -12.44 10.24 -146.19 -1.50 -13.94 16 14 C 0.09 3.32 3.81 30.81 0.12 3.44 16 15 H 0.13 4.42 8.14 -2.39 -0.02 4.40 16 16 C 0.16 8.47 5.03 86.64 0.44 8.91 16 17 N -0.62 -34.87 3.39 -696.28 -2.36 -37.23 16 18 C -0.24 -15.04 10.25 84.03 0.86 -14.18 16 19 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 20 C -0.06 -3.57 5.48 84.86 0.47 -3.11 16 21 N -0.95 -58.92 10.26 21.65 0.22 -58.69 16 22 Si 0.98 48.96 29.55 68.60 2.03 50.99 16 23 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 26 C 0.11 5.21 6.29 86.70 0.55 5.76 16 27 C 0.13 4.81 3.41 45.66 0.16 4.96 16 28 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 29 N -0.55 -10.01 6.15 -174.60 -1.07 -11.08 16 30 H 0.43 3.99 8.96 -92.70 -0.83 3.16 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.17 4.39 8.06 -2.91 -0.02 4.36 16 37 H 0.16 1.48 8.07 -2.39 -0.02 1.46 16 38 H 0.13 2.46 7.14 -2.39 -0.02 2.44 16 39 H 0.11 1.72 6.31 -2.39 -0.02 1.70 16 40 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.02 0.84 6.84 -2.39 -0.02 0.82 16 42 H 0.15 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.01 0.67 7.51 -2.39 -0.02 0.65 16 44 H 0.03 1.48 5.74 -2.38 -0.01 1.47 16 45 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 46 H 0.07 3.75 4.81 -9.68 -0.05 3.70 16 47 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -90.87 368.58 0.39 -90.48 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.13 Total: 14.01 kcal Atomic # 6 Polarization: 23.06 SS G_CDS: 7.45 Total: 30.52 kcal Atomic # 7 Polarization: -140.70 SS G_CDS: -7.69 Total: -148.39 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -1.54 Total: -37.61 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.03 Total: 50.99 kcal Total: -90.87 0.39 -90.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083110292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.193 kcal (2) G-P(sol) polarization free energy of solvation -90.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds