Wall clock time and date at job start Tue Mar 31 2020 18:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47005 * 2 1 4 4 C 1.39672 * 126.07093 * 124.98461 * 3 2 1 5 5 C 1.38408 * 105.36156 * 180.02562 * 4 3 2 6 6 C 1.47154 * 126.88449 * 179.97438 * 5 4 3 7 7 O 1.21626 * 120.00183 * 158.43620 * 6 5 4 8 8 N 1.34781 * 120.00068 * 338.43634 * 6 5 4 9 9 C 1.44963 * 117.33508 * 4.50621 * 8 6 5 10 10 C 1.51967 * 111.93472 * 203.73448 * 9 8 6 11 11 O 1.41326 * 111.60639 * 319.69474 * 10 9 8 12 12 C 1.40850 * 118.30896 * 56.89887 * 11 10 9 13 13 H 1.09001 * 109.53932 * 188.63117 * 12 11 10 14 14 C 1.53912 * 110.30234 * 68.00659 * 12 11 10 15 15 N 1.46775 * 107.62314 * 221.40850 * 14 12 11 16 16 C 1.36938 * 125.35763 * 178.79052 * 15 14 12 17 17 H 1.08008 * 119.99905 * 174.92940 * 16 15 14 18 18 C 1.38810 * 120.00146 * 354.92653 * 16 15 14 19 19 N 1.31620 * 120.00078 * 9.65254 * 18 16 15 20 20 Si 1.86798 * 119.99921 * 189.65196 * 18 16 15 21 21 H 1.48500 * 109.47225 * 94.97250 * 20 18 16 22 22 H 1.48497 * 109.47164 * 214.97574 * 20 18 16 23 23 H 1.48503 * 109.47434 * 334.97520 * 20 18 16 24 24 C 1.46870 * 109.27891 * 358.80973 * 15 14 12 25 25 C 1.44547 * 117.33902 * 184.24918 * 8 6 5 26 26 H 1.09000 * 109.63817 * 286.46896 * 25 8 6 27 27 N 1.36603 * 106.22973 * 359.97438 * 5 4 3 28 28 C 1.46495 * 125.18777 * 180.02562 * 27 5 4 29 29 N 1.28440 * 109.62202 * 0.02562 * 27 5 4 30 30 H 1.09000 * 109.46708 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46892 * 299.99735 * 1 2 3 32 32 H 1.09004 * 109.47498 * 59.99793 * 1 2 3 33 33 H 1.09001 * 109.46892 * 240.00265 * 2 1 3 34 34 H 1.08992 * 109.47424 * 119.99798 * 2 1 3 35 35 H 1.07996 * 127.31549 * 0.03471 * 4 3 2 36 36 H 1.08998 * 108.99175 * 324.36237 * 9 8 6 37 37 H 1.08994 * 108.98791 * 83.10497 * 9 8 6 38 38 H 1.08998 * 109.05329 * 80.24480 * 10 9 8 39 39 H 1.09000 * 109.04816 * 199.14566 * 10 9 8 40 40 H 1.08998 * 109.82333 * 340.93250 * 14 12 11 41 41 H 1.08999 * 109.82234 * 101.79984 * 14 12 11 42 42 H 0.96993 * 119.99945 * 179.97438 * 19 18 16 43 43 H 1.08996 * 110.06679 * 137.03491 * 24 15 14 44 44 H 1.09007 * 110.06647 * 258.50880 * 24 15 14 45 45 H 1.09000 * 109.47312 * 271.80091 * 28 27 5 46 46 H 1.09000 * 109.46807 * 31.80090 * 28 27 5 47 47 H 1.08998 * 109.46995 * 151.79789 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9167 1.9804 0.9250 5 6 3.0832 3.2948 0.5243 6 6 3.9230 4.3156 1.1709 7 8 4.2970 5.2850 0.5387 8 7 4.2778 4.1764 2.4637 9 6 3.8851 2.9523 3.1336 10 6 3.8075 3.1298 4.6408 11 8 4.8698 3.9253 5.1265 12 6 5.0317 5.2198 4.5956 13 1 5.9703 5.6449 4.9512 14 6 3.8623 6.1234 5.0254 15 7 3.4766 6.9337 3.8639 16 6 2.4561 7.8464 3.8381 17 1 2.2986 8.4557 2.9603 18 6 1.6241 7.9887 4.9401 19 7 1.9250 7.3908 6.0734 20 14 0.0775 9.0287 4.8146 21 1 -1.0813 8.1562 4.4965 22 1 -0.1619 9.7177 6.1081 23 1 0.2462 10.0391 3.7394 24 6 4.3572 6.6110 2.7336 25 6 5.0237 5.2573 3.0675 26 1 6.0469 5.2509 2.6919 27 7 2.3117 3.4544 -0.5916 28 6 2.1821 4.6962 -1.3578 29 7 1.7172 2.3495 -0.8666 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.3736 1.4914 1.7725 36 1 2.9083 2.6424 2.7623 37 1 4.6130 2.1738 2.9052 38 1 2.8609 3.6067 4.8947 39 1 3.8499 2.1502 5.1170 40 1 3.0195 5.5104 5.3447 41 1 4.1776 6.7726 5.8423 42 1 1.3438 7.4905 6.8435 43 1 3.7732 6.5243 1.8174 44 1 5.1183 7.3831 2.6202 45 1 1.3767 5.2994 -0.9388 46 1 3.1175 5.2535 -1.3073 47 1 1.9558 4.4597 -2.3975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083233247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:13 Heat of formation + Delta-G solvation = 65.111002 kcal Electronic energy + Delta-G solvation = -30908.217607 eV Core-core repulsion = 26902.305960 eV Total energy + Delta-G solvation = -4005.911647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.66980 -40.63771 -38.32795 -35.96824 -35.33741 -34.63829 -32.65445 -31.76921 -30.80468 -30.01080 -28.11963 -27.42526 -26.85900 -24.81546 -23.85020 -23.20140 -22.99299 -21.49125 -20.23154 -19.32563 -18.57186 -17.50666 -17.00501 -16.76086 -16.47808 -16.20923 -15.38297 -15.19450 -14.92615 -14.73712 -14.53874 -14.27143 -14.14090 -13.81759 -13.77221 -13.36649 -12.97839 -12.75354 -12.54978 -12.52494 -12.17416 -12.11180 -11.94233 -11.59581 -11.42884 -11.27920 -11.14778 -10.94769 -10.70289 -10.67958 -10.54312 -10.37258 -10.11900 -9.76951 -9.60379 -9.13927 -8.97376 -8.83220 -8.61844 -8.31258 -6.85530 -5.77341 -3.08615 1.32473 2.31497 2.52348 3.06394 3.23367 3.37131 3.43044 3.44673 4.06522 4.29316 4.40230 4.46879 4.77037 4.84877 5.02239 5.07279 5.10051 5.18741 5.20182 5.26174 5.30756 5.35614 5.41180 5.49154 5.52459 5.58603 5.63355 5.65355 5.69541 5.76666 5.79277 5.95927 5.98852 6.04223 6.11727 6.22946 6.41828 6.45877 6.72145 6.74969 7.01896 7.30444 7.37992 7.48015 7.70397 7.84501 8.04457 8.18428 8.22794 9.17294 9.78046 10.41549 11.34681 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.004346 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.795299 B = 6441.738675 C = 7115.281595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 C 0.022 3.978 4 C -0.204 4.204 5 C -0.025 4.025 6 C 0.584 3.416 7 O -0.529 6.529 8 N -0.564 5.564 9 C 0.058 3.942 10 C 0.056 3.944 11 O -0.370 6.370 12 C 0.071 3.929 13 H 0.112 0.888 14 C 0.151 3.849 15 N -0.602 5.602 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.005 4.005 19 N -0.919 5.919 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.118 3.882 25 C 0.110 3.890 26 H 0.077 0.923 27 N -0.256 5.256 28 C 0.081 3.919 29 N -0.277 5.277 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.172 0.828 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.253 0.747 43 H 0.073 0.927 44 H 0.029 0.971 45 H 0.085 0.915 46 H 0.113 0.887 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -14.914 -9.359 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.134 4.134 4 C -0.232 4.232 5 C -0.153 4.153 6 C 0.371 3.629 7 O -0.407 6.407 8 N -0.296 5.296 9 C -0.065 4.065 10 C -0.021 4.021 11 O -0.287 6.287 12 C 0.012 3.988 13 H 0.130 0.870 14 C 0.026 3.974 15 N -0.329 5.329 16 C -0.355 4.355 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.566 5.566 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.008 4.008 25 C 0.006 3.994 26 H 0.095 0.905 27 N -0.042 5.042 28 C -0.059 4.059 29 N -0.111 5.111 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.189 0.811 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.103 0.897 46 H 0.132 0.868 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.357 -14.011 -10.385 17.599 hybrid contribution -0.599 0.612 0.548 1.017 sum 1.758 -13.399 -9.838 16.715 Atomic orbital electron populations 1.21720 0.94645 1.01524 1.02599 1.19846 0.96140 0.88440 1.02879 1.21990 1.00422 0.96604 0.94419 1.22671 1.04380 0.92889 1.03297 1.21404 1.03018 0.96777 0.94145 1.16971 0.79867 0.84174 0.81936 1.90719 1.55770 1.30848 1.63369 1.46294 1.54863 1.18573 1.09836 1.22510 1.01995 0.86341 0.95678 1.22293 0.92287 0.96040 0.91474 1.86869 1.51027 1.26466 1.64327 1.22990 1.02080 0.83863 0.89916 0.87026 1.21687 0.92872 0.92424 0.90425 1.44225 1.36120 1.45965 1.06618 1.19033 1.03598 1.12538 1.00330 0.90391 1.24791 0.99146 1.00451 0.95771 1.69969 1.37837 1.47884 1.00944 0.86157 0.83602 0.79455 0.76980 1.21719 1.21683 1.20573 1.21971 0.94261 0.90761 0.93803 1.21903 0.94785 0.87569 0.95174 0.90476 1.45503 1.30155 1.09480 1.19103 1.22401 1.06155 0.81302 0.96031 1.73056 1.19695 0.92694 1.25634 0.92394 0.92587 0.92207 0.90645 0.90059 0.81076 0.87858 0.91229 0.91951 0.87761 0.92709 0.92878 0.93697 0.90918 0.95357 0.89676 0.86827 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.87 37.16 0.37 -0.94 16 2 C -0.03 -0.31 6.51 -27.88 -0.18 -0.49 16 3 C 0.02 0.28 6.49 -82.46 -0.54 -0.26 16 4 C -0.20 -2.61 8.49 -38.98 -0.33 -2.94 16 5 C -0.02 -0.38 6.56 -82.06 -0.54 -0.92 16 6 C 0.58 10.14 6.89 -12.64 -0.09 10.05 16 7 O -0.53 -10.13 12.15 5.25 0.06 -10.07 16 8 N -0.56 -9.49 3.08 -169.88 -0.52 -10.01 16 9 C 0.06 0.78 4.68 -5.39 -0.03 0.75 16 10 C 0.06 0.82 6.72 36.63 0.25 1.07 16 11 O -0.37 -6.40 10.24 -34.45 -0.35 -6.75 16 12 C 0.07 1.33 3.82 -26.33 -0.10 1.23 16 13 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 14 C 0.15 3.61 5.03 -3.42 -0.02 3.60 16 15 N -0.60 -15.40 3.39 -171.21 -0.58 -15.98 16 16 C -0.23 -6.37 10.23 -15.06 -0.15 -6.53 16 17 H 0.08 2.16 7.85 -52.48 -0.41 1.74 16 18 C -0.01 -0.15 5.46 -17.43 -0.10 -0.24 16 19 N -0.92 -26.73 10.35 55.49 0.57 -26.15 16 20 Si 0.91 22.21 29.56 -169.99 -5.03 17.18 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.12 2.59 6.29 -3.04 -0.02 2.57 16 25 C 0.11 2.02 3.39 -68.24 -0.23 1.79 16 26 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 27 N -0.26 -3.82 3.75 -63.89 -0.24 -4.05 16 28 C 0.08 1.00 11.02 59.84 0.66 1.66 16 29 N -0.28 -4.01 11.87 33.64 0.40 -3.61 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 35 H 0.17 1.71 5.04 -52.49 -0.26 1.45 16 36 H 0.10 1.33 4.77 -51.93 -0.25 1.08 16 37 H 0.07 0.76 7.34 -51.93 -0.38 0.38 16 38 H 0.06 1.08 6.81 -51.93 -0.35 0.72 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.05 1.45 5.74 -51.93 -0.30 1.15 16 41 H 0.05 1.41 7.53 -51.93 -0.39 1.02 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.07 1.69 5.07 -51.93 -0.26 1.43 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.11 1.49 6.22 -51.93 -0.32 1.17 16 47 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -33.41 361.40 -8.00 -41.41 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.72 Total: 2.19 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -1.04 Total: 10.40 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.37 Total: -59.81 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.29 Total: -16.82 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.41 -8.00 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083233247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.520 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds