Wall clock time and date at job start Tue Mar 31 2020 17:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38540 * 120.01565 * 125.02250 * 3 2 1 5 5 C 1.40082 * 117.81574 * 179.97438 * 4 3 2 6 6 C 1.48133 * 121.14357 * 179.97438 * 5 4 3 7 7 O 1.21520 * 119.99697 * 173.61198 * 6 5 4 8 8 N 1.34777 * 120.00602 * 353.61942 * 6 5 4 9 9 C 1.46497 * 120.00056 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.46381 * 324.99900 * 9 8 6 11 11 C 1.53043 * 109.45904 * 84.97104 * 9 8 6 12 12 C 1.53188 * 109.31171 * 181.39404 * 11 9 8 13 13 N 1.46927 * 108.76968 * 305.34392 * 12 11 9 14 14 C 1.36933 * 120.63512 * 233.64046 * 13 12 11 15 15 H 1.07999 * 119.99979 * 29.72378 * 14 13 12 16 16 C 1.38813 * 120.00024 * 209.73198 * 14 13 12 17 17 N 1.31617 * 120.00251 * 16.08473 * 16 14 13 18 18 Si 1.86805 * 119.99717 * 196.09268 * 16 14 13 19 19 H 1.48493 * 109.46915 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46856 * 119.99729 * 18 16 14 21 21 H 1.48493 * 109.47064 * 239.99278 * 18 16 14 22 22 C 1.46932 * 118.73340 * 53.61705 * 13 12 11 23 23 C 1.53042 * 109.46006 * 205.02383 * 9 8 6 24 24 H 1.08998 * 109.49707 * 58.62581 * 23 9 8 25 25 O 1.42903 * 109.49713 * 298.57127 * 23 9 8 26 26 C 1.39763 * 117.70531 * 359.97438 * 5 4 3 27 27 C 1.50702 * 120.16946 * 180.02562 * 26 5 4 28 28 N 1.31897 * 119.65671 * 359.97438 * 26 5 4 29 29 N 1.28270 * 122.32798 * 0.02562 * 28 26 5 30 30 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47338 * 300.00636 * 1 2 3 32 32 H 1.08995 * 109.47257 * 60.00140 * 1 2 3 33 33 H 1.08993 * 109.47289 * 239.99358 * 2 1 3 34 34 H 1.09007 * 109.46712 * 119.99519 * 2 1 3 35 35 H 1.08005 * 121.09794 * 359.95172 * 4 3 2 36 36 H 0.97005 * 119.99399 * 359.97438 * 8 6 5 37 37 H 1.08996 * 109.49625 * 301.33612 * 11 9 8 38 38 H 1.09003 * 109.50029 * 61.43156 * 11 9 8 39 39 H 1.09005 * 109.58716 * 185.56453 * 12 11 9 40 40 H 1.09005 * 109.59740 * 65.13409 * 12 11 9 41 41 H 0.96998 * 120.00256 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.58461 * 186.60670 * 22 13 12 43 43 H 1.08995 * 109.70299 * 66.24894 * 22 13 12 44 44 H 0.96698 * 114.00430 * 180.02562 * 25 23 9 45 45 H 1.08998 * 109.47436 * 82.81613 * 27 26 5 46 46 H 1.09003 * 109.46727 * 202.82057 * 27 26 5 47 47 H 1.09000 * 109.47198 * 322.81250 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9124 1.8447 0.9824 5 6 3.3504 3.1746 0.9380 6 6 4.2909 3.7056 1.9517 7 8 4.7479 4.8250 1.8292 8 7 4.6401 2.9474 3.0099 9 6 5.5707 3.4725 4.0121 10 1 6.3119 4.1049 3.5234 11 6 4.7973 4.2973 5.0434 12 6 5.7778 4.8735 6.0697 13 7 6.5624 3.7720 6.6441 14 6 6.6298 3.5965 8.0004 15 1 5.8028 3.8986 8.6258 16 6 7.7613 3.0304 8.5717 17 7 8.8789 2.9533 7.8808 18 14 7.6975 2.3779 10.3209 19 1 6.3356 2.5825 10.8761 20 1 8.0199 0.9283 10.3204 21 1 8.6867 3.1046 11.1566 22 6 7.2730 2.8620 5.7352 23 6 6.2757 2.3087 4.7125 24 1 6.8066 1.7076 3.9743 25 8 5.3077 1.4973 5.3809 26 6 2.8693 3.9830 -0.0956 27 6 3.3046 5.4222 -0.1966 28 7 2.0331 3.4795 -0.9827 29 7 1.6359 2.2607 -0.9364 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.2496 1.1721 1.7573 36 1 4.2751 2.0540 3.1079 37 1 4.2764 5.1122 4.5409 38 1 4.0729 3.6596 5.5502 39 1 5.2237 5.3786 6.8609 40 1 6.4462 5.5814 5.5795 41 1 9.6694 2.5574 8.2798 42 1 7.7054 2.0400 6.3056 43 1 8.0645 3.4038 5.2176 44 1 5.6848 0.7392 5.8478 45 1 4.2695 5.4755 -0.7008 46 1 2.5656 5.9862 -0.7658 47 1 3.3934 5.8461 0.8036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090451947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:21 Heat of formation + Delta-G solvation = -11.783945 kcal Electronic energy + Delta-G solvation = -29351.757322 eV Core-core repulsion = 25342.511260 eV Total energy + Delta-G solvation = -4009.246062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.62803 -39.81245 -38.09483 -35.60436 -34.90349 -34.56553 -33.82037 -32.32764 -31.62673 -29.55731 -29.18664 -28.00699 -26.26935 -25.03783 -23.74158 -22.98658 -22.40143 -21.76053 -20.48631 -19.58184 -17.96879 -17.76547 -17.19528 -16.04953 -15.95464 -15.89333 -15.55233 -15.30883 -14.97406 -14.79112 -14.38677 -14.12496 -13.93345 -13.88668 -13.50737 -13.31892 -13.16937 -12.90970 -12.58071 -12.36573 -12.23648 -12.13930 -12.11184 -11.57970 -11.35120 -11.27282 -11.07760 -10.88721 -10.66598 -10.59790 -10.48736 -10.47858 -10.24129 -10.12926 -9.82782 -9.76178 -9.55282 -9.30654 -8.89376 -8.58879 -6.74246 -5.89268 -3.32111 0.07487 0.56052 2.61350 2.93818 3.29876 3.33951 3.39184 3.41589 3.61131 3.93948 4.09914 4.31389 4.40996 4.46492 4.67140 4.74558 4.78364 4.88673 5.17779 5.18572 5.19997 5.29141 5.34453 5.37348 5.44907 5.50758 5.56613 5.65362 5.69741 5.82057 5.84370 5.91808 5.95383 6.02486 6.10975 6.21585 6.34160 6.42995 6.66620 6.71789 6.87124 7.06086 7.31276 7.43901 7.72200 8.04200 8.12761 8.35789 8.40848 9.10381 9.72685 10.30247 11.19657 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019330 B = 0.002731 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.162931 B =10251.979274 C =11198.535887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C 0.058 3.942 4 C -0.080 4.080 5 C -0.126 4.126 6 C 0.556 3.444 7 O -0.520 6.520 8 N -0.706 5.706 9 C 0.162 3.838 10 H 0.095 0.905 11 C -0.137 4.137 12 C 0.148 3.852 13 N -0.582 5.582 14 C -0.245 4.245 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.906 5.906 18 Si 0.903 3.097 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.147 3.853 23 C 0.072 3.928 24 H 0.044 0.956 25 O -0.561 6.561 26 C 0.117 3.883 27 C -0.104 4.104 28 N -0.243 5.243 29 N -0.222 5.222 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.154 0.846 36 H 0.401 0.599 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.021 0.979 41 H 0.254 0.746 42 H 0.094 0.906 43 H 0.029 0.971 44 H 0.376 0.624 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.492 -5.840 -14.614 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.086 4.086 4 C -0.110 4.110 5 C -0.140 4.140 6 C 0.341 3.659 7 O -0.397 6.397 8 N -0.356 5.356 9 C 0.059 3.941 10 H 0.113 0.887 11 C -0.177 4.177 12 C 0.021 3.979 13 N -0.304 5.304 14 C -0.375 4.375 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.551 5.551 18 Si 0.733 3.267 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.020 3.980 23 C 0.011 3.989 24 H 0.062 0.938 25 O -0.366 6.366 26 C -0.027 4.027 27 C -0.162 4.162 28 N -0.085 5.085 29 N -0.065 5.065 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.172 0.828 36 H 0.236 0.764 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.047 0.953 44 H 0.224 0.776 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.308 -4.370 -16.208 20.816 hybrid contribution 1.248 -1.584 2.472 3.190 sum -11.060 -5.954 -13.736 18.613 Atomic orbital electron populations 1.21713 0.93591 1.02262 1.02914 1.20466 0.97434 0.88858 1.03921 1.22842 0.94746 0.98770 0.92276 1.22596 0.94647 0.95256 0.98502 1.21228 0.99863 0.94898 0.98051 1.17893 0.81244 0.85531 0.81263 1.90763 1.53961 1.18417 1.76562 1.46161 1.47260 1.18848 1.23376 1.21128 0.90952 0.94915 0.87104 0.88735 1.22322 0.99595 0.98776 0.97008 1.20900 0.92410 0.90326 0.94250 1.43863 1.56567 1.27639 1.02363 1.19202 0.98451 1.37523 0.82301 0.91670 1.25079 0.94612 1.02215 0.97795 1.70013 1.00101 1.47765 1.37206 0.86213 0.77560 0.78423 0.84529 1.20222 1.21605 1.21728 1.21400 0.90812 0.95582 0.90226 1.22856 0.90758 0.90829 0.94444 0.93795 1.86333 1.36035 1.42900 1.71375 1.23156 0.91405 0.98828 0.89321 1.20957 1.01794 0.87836 1.05591 1.73076 1.09148 1.05372 1.20937 1.72734 1.17098 0.97557 1.19107 0.91778 0.92691 0.91391 0.89303 0.89683 0.82826 0.76380 0.92777 0.91125 0.92318 0.96130 0.93632 0.88812 0.95304 0.77647 0.89369 0.90687 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.78 37.16 0.36 -0.63 16 2 C -0.07 -0.46 6.35 -27.88 -0.18 -0.64 16 3 C 0.06 0.58 6.25 -82.46 -0.52 0.07 16 4 C -0.08 -0.78 9.29 -38.78 -0.36 -1.14 16 5 C -0.13 -1.53 5.92 -104.57 -0.62 -2.15 16 6 C 0.56 7.69 7.70 -12.20 -0.09 7.59 16 7 O -0.52 -8.44 13.22 5.35 0.07 -8.37 16 8 N -0.71 -9.38 5.01 -54.62 -0.27 -9.66 16 9 C 0.16 2.63 2.20 -67.89 -0.15 2.48 16 10 H 0.09 1.66 7.58 -51.93 -0.39 1.26 16 11 C -0.14 -2.41 5.51 -26.61 -0.15 -2.56 16 12 C 0.15 3.05 6.52 -3.71 -0.02 3.02 16 13 N -0.58 -13.70 2.93 -172.32 -0.50 -14.20 16 14 C -0.25 -6.40 9.57 -15.06 -0.14 -6.55 16 15 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 16 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 17 N -0.91 -24.92 11.26 55.49 0.63 -24.29 16 18 Si 0.90 20.78 29.58 -169.99 -5.03 15.76 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 C 0.15 3.16 4.93 -3.71 -0.02 3.14 16 23 C 0.07 1.20 3.38 -26.61 -0.09 1.11 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 O -0.56 -8.97 12.08 -35.23 -0.43 -9.39 16 26 C 0.12 1.50 6.91 -81.99 -0.57 0.93 16 27 C -0.10 -1.18 8.93 36.01 0.32 -0.86 16 28 N -0.24 -3.29 11.42 33.81 0.39 -2.90 16 29 N -0.22 -2.79 11.04 33.57 0.37 -2.42 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.53 7.96 -51.93 -0.41 0.12 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.41 7.92 -51.92 -0.41 0.00 16 35 H 0.15 1.06 6.60 -52.48 -0.35 0.72 16 36 H 0.40 4.51 6.48 -40.82 -0.26 4.25 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.32 7.61 -51.93 -0.40 0.92 16 39 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 42 H 0.09 2.22 6.16 -51.93 -0.32 1.90 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.38 5.18 9.08 45.56 0.41 5.60 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.10 1.31 6.01 -51.93 -0.31 1.00 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -30.87 378.82 -7.58 -38.45 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.21 Total: 7.57 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -2.31 Total: 3.76 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.60 Total: -53.48 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.36 Total: -17.77 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.87 -7.58 -38.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090451947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.667 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds