Wall clock time and date at job start Tue Mar 31 2020 17:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38540 * 120.01565 * 125.02250 * 3 2 1 5 5 C 1.40082 * 117.81574 * 179.97438 * 4 3 2 6 6 C 1.48133 * 121.14357 * 179.97438 * 5 4 3 7 7 O 1.21520 * 119.99697 * 173.61198 * 6 5 4 8 8 N 1.34777 * 120.00602 * 353.61942 * 6 5 4 9 9 C 1.46497 * 120.00056 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.46381 * 324.99900 * 9 8 6 11 11 C 1.53043 * 109.45904 * 84.97104 * 9 8 6 12 12 C 1.53188 * 109.31171 * 181.39404 * 11 9 8 13 13 N 1.46927 * 108.76968 * 305.34392 * 12 11 9 14 14 C 1.36933 * 120.63512 * 233.64046 * 13 12 11 15 15 H 1.07999 * 119.99979 * 29.72378 * 14 13 12 16 16 C 1.38813 * 120.00024 * 209.73198 * 14 13 12 17 17 N 1.31617 * 120.00251 * 16.08473 * 16 14 13 18 18 Si 1.86805 * 119.99717 * 196.09268 * 16 14 13 19 19 H 1.48493 * 109.46915 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46856 * 119.99729 * 18 16 14 21 21 H 1.48493 * 109.47064 * 239.99278 * 18 16 14 22 22 C 1.46932 * 118.73340 * 53.61705 * 13 12 11 23 23 C 1.53042 * 109.46006 * 205.02383 * 9 8 6 24 24 H 1.08998 * 109.49707 * 58.62581 * 23 9 8 25 25 O 1.42903 * 109.49713 * 298.57127 * 23 9 8 26 26 C 1.39763 * 117.70531 * 359.97438 * 5 4 3 27 27 C 1.50702 * 120.16946 * 180.02562 * 26 5 4 28 28 N 1.31897 * 119.65671 * 359.97438 * 26 5 4 29 29 N 1.28270 * 122.32798 * 0.02562 * 28 26 5 30 30 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47338 * 300.00636 * 1 2 3 32 32 H 1.08995 * 109.47257 * 60.00140 * 1 2 3 33 33 H 1.08993 * 109.47289 * 239.99358 * 2 1 3 34 34 H 1.09007 * 109.46712 * 119.99519 * 2 1 3 35 35 H 1.08005 * 121.09794 * 359.95172 * 4 3 2 36 36 H 0.97005 * 119.99399 * 359.97438 * 8 6 5 37 37 H 1.08996 * 109.49625 * 301.33612 * 11 9 8 38 38 H 1.09003 * 109.50029 * 61.43156 * 11 9 8 39 39 H 1.09005 * 109.58716 * 185.56453 * 12 11 9 40 40 H 1.09005 * 109.59740 * 65.13409 * 12 11 9 41 41 H 0.96998 * 120.00256 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.58461 * 186.60670 * 22 13 12 43 43 H 1.08995 * 109.70299 * 66.24894 * 22 13 12 44 44 H 0.96698 * 114.00430 * 180.02562 * 25 23 9 45 45 H 1.08998 * 109.47436 * 82.81613 * 27 26 5 46 46 H 1.09003 * 109.46727 * 202.82057 * 27 26 5 47 47 H 1.09000 * 109.47198 * 322.81250 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9124 1.8447 0.9824 5 6 3.3504 3.1746 0.9380 6 6 4.2909 3.7056 1.9517 7 8 4.7479 4.8250 1.8292 8 7 4.6401 2.9474 3.0099 9 6 5.5707 3.4725 4.0121 10 1 6.3119 4.1049 3.5234 11 6 4.7973 4.2973 5.0434 12 6 5.7778 4.8735 6.0697 13 7 6.5624 3.7720 6.6441 14 6 6.6298 3.5965 8.0004 15 1 5.8028 3.8986 8.6258 16 6 7.7613 3.0304 8.5717 17 7 8.8789 2.9533 7.8808 18 14 7.6975 2.3779 10.3209 19 1 6.3356 2.5825 10.8761 20 1 8.0199 0.9283 10.3204 21 1 8.6867 3.1046 11.1566 22 6 7.2730 2.8620 5.7352 23 6 6.2757 2.3087 4.7125 24 1 6.8066 1.7076 3.9743 25 8 5.3077 1.4973 5.3809 26 6 2.8693 3.9830 -0.0956 27 6 3.3046 5.4222 -0.1966 28 7 2.0331 3.4795 -0.9827 29 7 1.6359 2.2607 -0.9364 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.2496 1.1721 1.7573 36 1 4.2751 2.0540 3.1079 37 1 4.2764 5.1122 4.5409 38 1 4.0729 3.6596 5.5502 39 1 5.2237 5.3786 6.8609 40 1 6.4462 5.5814 5.5795 41 1 9.6694 2.5574 8.2798 42 1 7.7054 2.0400 6.3056 43 1 8.0645 3.4038 5.2176 44 1 5.6848 0.7392 5.8478 45 1 4.2695 5.4755 -0.7008 46 1 2.5656 5.9862 -0.7658 47 1 3.3934 5.8461 0.8036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090451947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:20 Heat of formation + Delta-G solvation = -34.061262 kcal Electronic energy + Delta-G solvation = -29352.723339 eV Core-core repulsion = 25342.511260 eV Total energy + Delta-G solvation = -4010.212079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.53665 -40.99153 -39.47865 -36.55410 -36.34312 -35.74159 -34.81991 -33.87785 -32.55114 -31.13934 -30.68974 -28.89778 -27.45215 -26.51424 -24.49050 -24.29367 -23.78118 -23.04268 -21.59430 -21.03213 -19.27687 -18.80589 -18.54886 -17.39080 -17.06614 -16.84050 -16.79463 -16.70394 -16.12508 -15.84197 -15.62695 -15.39294 -15.21734 -15.03253 -14.86803 -14.53154 -14.37287 -13.93370 -13.77636 -13.64452 -13.40573 -13.18727 -13.07625 -12.78158 -12.73115 -12.66220 -12.35634 -12.25963 -12.14841 -12.01772 -11.83771 -11.81967 -11.49715 -11.39815 -11.36440 -10.76733 -10.62363 -10.59240 -10.53121 -10.10938 -8.64821 -7.87729 -5.33393 -0.82326 -0.27184 1.47002 1.51155 1.58711 1.60667 1.82741 2.42251 2.51959 2.81591 3.09819 3.23283 3.27385 3.38757 3.48760 3.62392 3.70019 3.86989 3.98406 4.00661 4.10472 4.34565 4.37730 4.39468 4.41751 4.55524 4.60784 4.64282 4.65843 4.71706 4.85912 4.91320 4.93904 5.04910 5.06982 5.07992 5.18200 5.18623 5.25225 5.40000 5.42785 5.44043 5.57252 5.66613 6.35932 6.39431 6.91669 7.00137 7.16015 7.53183 7.83172 8.36431 9.18661 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019330 B = 0.002731 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.162931 B =10251.979274 C =11198.535887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 C 0.060 3.940 4 C -0.063 4.063 5 C -0.138 4.138 6 C 0.560 3.440 7 O -0.547 6.547 8 N -0.694 5.694 9 C 0.170 3.830 10 H 0.082 0.918 11 C -0.121 4.121 12 C 0.144 3.856 13 N -0.598 5.598 14 C -0.254 4.254 15 H 0.060 0.940 16 C -0.044 4.044 17 N -0.934 5.934 18 Si 0.965 3.035 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.297 1.297 22 C 0.151 3.849 23 C 0.091 3.909 24 H 0.073 0.927 25 O -0.561 6.561 26 C 0.106 3.894 27 C -0.099 4.099 28 N -0.267 5.267 29 N -0.244 5.244 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.189 0.811 36 H 0.414 0.586 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.013 0.987 41 H 0.251 0.749 42 H 0.070 0.930 43 H 0.005 0.995 44 H 0.388 0.612 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.727 -8.063 -14.794 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.085 4.085 4 C -0.093 4.093 5 C -0.153 4.153 6 C 0.346 3.654 7 O -0.426 6.426 8 N -0.345 5.345 9 C 0.065 3.935 10 H 0.100 0.900 11 C -0.161 4.161 12 C 0.018 3.982 13 N -0.321 5.321 14 C -0.384 4.384 15 H 0.078 0.922 16 C -0.240 4.240 17 N -0.581 5.581 18 Si 0.794 3.206 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.225 1.225 22 C 0.024 3.976 23 C 0.030 3.970 24 H 0.091 0.909 25 O -0.368 6.368 26 C -0.039 4.039 27 C -0.157 4.157 28 N -0.109 5.109 29 N -0.086 5.086 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.132 0.868 35 H 0.206 0.794 36 H 0.252 0.748 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.023 0.977 44 H 0.237 0.763 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.585 -6.615 -16.416 22.311 hybrid contribution 1.601 -0.887 2.512 3.108 sum -11.984 -7.501 -13.905 19.830 Atomic orbital electron populations 1.21706 0.93705 1.03204 1.01790 1.20657 0.97240 0.86849 1.05848 1.23398 0.94008 0.99811 0.91266 1.22976 0.93196 0.94480 0.98639 1.21065 1.00345 0.96076 0.97765 1.18068 0.80953 0.85056 0.81287 1.90762 1.54959 1.19717 1.77142 1.45845 1.46730 1.19373 1.22551 1.20802 0.90975 0.94451 0.87226 0.90039 1.22090 0.98582 0.98956 0.96450 1.20973 0.92561 0.89812 0.94838 1.44086 1.56976 1.28961 1.02060 1.19416 0.98211 1.37089 0.83681 0.92234 1.25720 0.94285 1.02832 1.01118 1.70150 1.00523 1.48779 1.38601 0.85249 0.77355 0.77653 0.80379 1.19558 1.21175 1.22491 1.21295 0.91504 0.94249 0.90555 1.22502 0.89855 0.91175 0.93464 0.90938 1.86306 1.35702 1.43248 1.71530 1.23293 0.91605 0.99325 0.89658 1.20891 1.02149 0.87684 1.04962 1.73043 1.09925 1.06202 1.21686 1.72666 1.17828 0.97646 1.20460 0.89813 0.93297 0.93066 0.88245 0.86808 0.79413 0.74771 0.92119 0.91593 0.92729 0.96919 0.94013 0.91169 0.97679 0.76306 0.89310 0.89678 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.78 71.98 0.70 -0.90 16 2 C -0.07 -0.67 6.35 29.85 0.19 -0.48 16 3 C 0.06 1.05 6.25 42.62 0.27 1.32 16 4 C -0.06 -1.03 9.29 22.79 0.21 -0.82 16 5 C -0.14 -3.11 5.92 -19.83 -0.12 -3.22 16 6 C 0.56 14.55 7.70 86.87 0.67 15.21 16 7 O -0.55 -17.43 13.22 -3.78 -0.05 -17.48 16 8 N -0.69 -16.62 5.01 -445.01 -2.23 -18.85 16 9 C 0.17 5.23 2.20 45.02 0.10 5.33 16 10 H 0.08 2.79 7.58 -2.39 -0.02 2.77 16 11 C -0.12 -4.12 5.51 30.67 0.17 -3.95 16 12 C 0.14 5.96 6.52 86.36 0.56 6.53 16 13 N -0.60 -28.27 2.93 -699.10 -2.05 -30.32 16 14 C -0.25 -13.30 9.57 84.03 0.80 -12.49 16 15 H 0.06 3.13 7.88 -2.91 -0.02 3.11 16 16 C -0.04 -2.33 4.92 84.86 0.42 -1.91 16 17 N -0.93 -52.06 11.26 21.65 0.24 -51.82 16 18 Si 0.96 42.76 29.58 68.60 2.03 44.79 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.30 -13.46 7.11 99.48 0.71 -12.76 16 22 C 0.15 6.48 4.93 86.36 0.43 6.90 16 23 C 0.09 2.86 3.38 30.67 0.10 2.96 16 24 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 25 O -0.56 -16.38 12.08 -148.98 -1.80 -18.18 16 26 C 0.11 2.64 6.91 42.92 0.30 2.94 16 27 C -0.10 -2.26 8.93 71.24 0.64 -1.62 16 28 N -0.27 -7.08 11.42 -46.94 -0.54 -7.61 16 29 N -0.24 -5.84 11.04 -47.69 -0.53 -6.36 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.05 0.73 7.96 -2.39 -0.02 0.71 16 33 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.11 0.52 7.92 -2.38 -0.02 0.51 16 35 H 0.19 1.65 6.60 -2.91 -0.02 1.63 16 36 H 0.41 7.69 6.48 -92.70 -0.60 7.09 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 2.34 7.61 -2.39 -0.02 2.32 16 39 H 0.05 2.25 7.93 -2.38 -0.02 2.23 16 40 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 42 H 0.07 3.35 6.16 -2.39 -0.01 3.33 16 43 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.39 9.64 9.08 -74.06 -0.67 8.97 16 45 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.09 2.35 6.01 -2.39 -0.01 2.33 16 Total: -1.00 -67.60 378.82 0.26 -67.34 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -0.26 Total: 22.70 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 5.44 Total: 15.79 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -5.09 Total: -114.96 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -1.85 Total: -35.66 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -67.60 0.26 -67.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090451947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.276 kcal (2) G-P(sol) polarization free energy of solvation -67.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds