Wall clock time and date at job start Tue Mar 31 2020 19:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47367 * 2 1 4 4 C 1.50703 * 109.46902 * 120.00530 * 2 1 3 5 5 N 1.32156 * 120.53503 * 307.24359 * 4 2 1 6 6 C 1.31859 * 120.96936 * 179.97438 * 5 4 2 7 7 N 1.31891 * 122.09224 * 0.28124 * 6 5 4 8 8 C 1.32134 * 120.96304 * 359.43403 * 7 6 5 9 9 C 1.39926 * 120.53636 * 127.22498 * 4 2 1 10 10 C 1.47834 * 120.94197 * 0.04373 * 9 4 2 11 11 O 1.21551 * 119.99857 * 39.51621 * 10 9 4 12 12 N 1.34778 * 119.99934 * 219.52157 * 10 9 4 13 13 C 1.46499 * 119.99717 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.46011 * 35.00335 * 13 12 10 15 15 C 1.53034 * 109.46002 * 275.02121 * 13 12 10 16 16 C 1.53159 * 109.32932 * 301.36366 * 15 13 12 17 17 N 1.46929 * 108.76971 * 305.35086 * 16 15 13 18 18 C 1.36931 * 120.63620 * 233.63244 * 17 16 15 19 19 H 1.08000 * 120.00329 * 154.72597 * 18 17 16 20 20 C 1.38817 * 120.00041 * 334.73182 * 18 17 16 21 21 N 1.31617 * 120.00152 * 157.73138 * 20 18 17 22 22 Si 1.86801 * 119.99662 * 337.73813 * 20 18 17 23 23 H 1.48494 * 109.47156 * 94.42337 * 22 20 18 24 24 H 1.48504 * 109.46652 * 214.42419 * 22 20 18 25 25 H 1.48501 * 109.47341 * 334.42058 * 22 20 18 26 26 C 1.46933 * 118.73218 * 53.61164 * 17 16 15 27 27 C 1.53048 * 109.45709 * 154.96828 * 13 12 10 28 28 H 1.09000 * 109.49438 * 178.63404 * 27 13 12 29 29 O 1.42894 * 109.49888 * 298.70481 * 27 13 12 30 30 H 1.09000 * 109.47173 * 299.99780 * 1 2 3 31 31 H 1.09007 * 109.47254 * 59.99313 * 1 2 3 32 32 H 1.08998 * 109.47365 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46563 * 239.99784 * 2 1 3 34 34 H 1.08994 * 109.47181 * 300.00743 * 3 2 1 35 35 H 1.09008 * 109.46623 * 60.00199 * 3 2 1 36 36 H 1.09000 * 109.47236 * 180.02562 * 3 2 1 37 37 H 1.07996 * 118.95626 * 180.02562 * 6 5 4 38 38 H 1.08002 * 120.53851 * 180.25195 * 8 7 6 39 39 H 0.97002 * 119.99717 * 359.97438 * 12 10 9 40 40 H 1.09000 * 109.49620 * 61.29959 * 15 13 12 41 41 H 1.09003 * 109.50051 * 181.39267 * 15 13 12 42 42 H 1.09001 * 109.59051 * 185.57157 * 16 15 13 43 43 H 1.09001 * 109.59296 * 65.14030 * 16 15 13 44 44 H 0.96996 * 119.99877 * 180.02562 * 21 20 18 45 45 H 1.09006 * 109.58053 * 186.60678 * 26 17 16 46 46 H 1.08995 * 109.70309 * 66.25289 * 26 17 16 47 47 H 0.96704 * 113.99962 * 180.02562 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.6066 -0.3572 2.4306 6 6 2.0400 -0.9734 3.5129 7 7 2.9146 -1.9589 3.4553 8 6 3.3886 -2.3803 2.2961 9 6 2.9567 -1.7553 1.1206 10 6 3.4630 -2.1865 -0.1997 11 8 3.7152 -1.3592 -1.0537 12 7 3.6447 -3.4971 -0.4565 13 6 4.1459 -3.9244 -1.7651 14 1 4.8587 -3.1893 -2.1387 15 6 2.9763 -4.0444 -2.7447 16 6 1.9601 -5.0524 -2.1998 17 7 2.6510 -6.3201 -1.9275 18 6 2.1926 -7.4938 -2.4634 19 1 2.8722 -8.3189 -2.6177 20 6 0.8543 -7.6232 -2.8086 21 7 0.4873 -8.5251 -3.6942 22 14 -0.4257 -6.5171 -2.0164 23 1 -0.6688 -5.3389 -2.8869 24 1 -1.6921 -7.2726 -1.8407 25 1 0.0662 -6.0607 -0.6916 26 6 3.8437 -6.3044 -1.0694 27 6 4.8389 -5.2820 -1.6271 28 1 5.1908 -5.6119 -2.6046 29 8 5.9494 -5.1623 -0.7358 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 3.1301 1.4424 -0.0005 37 1 1.6701 -0.6583 4.4774 38 1 4.1016 -3.1906 2.2567 39 1 3.4437 -4.1573 0.2252 40 1 2.4976 -3.0720 -2.8604 41 1 3.3453 -4.3861 -3.7117 42 1 1.1751 -5.2155 -2.9383 43 1 1.5232 -4.6689 -1.2777 44 1 -0.4479 -8.6152 -3.9356 45 1 4.3015 -7.2936 -1.0621 46 1 3.5623 -6.0244 -0.0542 47 1 6.4365 -5.9868 -0.6014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090819309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:54 Heat of formation + Delta-G solvation = -13.286813 kcal Electronic energy + Delta-G solvation = -30473.615139 eV Core-core repulsion = 26464.303908 eV Total energy + Delta-G solvation = -4009.311231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.58029 -39.92397 -38.19785 -36.24870 -35.75145 -34.31406 -33.33221 -32.29940 -31.63754 -30.35300 -29.26371 -27.25000 -25.83598 -25.21870 -24.87046 -22.83761 -22.18589 -21.28010 -21.00851 -19.22021 -18.10578 -18.01029 -17.25702 -16.89918 -16.62075 -15.82484 -15.50385 -15.21104 -14.87971 -14.67006 -14.57450 -14.32969 -14.22098 -14.03549 -13.70899 -13.53411 -13.24242 -12.72874 -12.59364 -12.47195 -12.28782 -11.96215 -11.84489 -11.70063 -11.69190 -11.44975 -11.35074 -11.27359 -11.02563 -10.75158 -10.41733 -10.17748 -10.08065 -9.84706 -9.82792 -9.73841 -9.60543 -9.49052 -8.97656 -8.71818 -7.18665 -6.08749 -3.44764 0.31748 0.77730 2.63580 3.08294 3.22123 3.38756 3.39976 3.51082 3.73530 3.85080 4.07273 4.18177 4.40009 4.55461 4.64553 4.78449 4.94286 4.97433 5.02359 5.08601 5.16220 5.20662 5.35258 5.44470 5.51373 5.55998 5.58504 5.66153 5.73040 5.77306 5.87182 5.89724 6.02965 6.06904 6.12332 6.20892 6.22519 6.25505 6.35354 6.48506 6.53420 6.65688 6.70248 7.46621 7.66842 7.76439 7.80873 8.12674 8.16911 8.76098 9.56328 9.89784 11.06531 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012082 B = 0.004294 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.014872 B = 6518.958028 C = 7282.612508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 C -0.131 4.131 4 C 0.237 3.763 5 N -0.517 5.517 6 C 0.310 3.690 7 N -0.525 5.525 8 C 0.183 3.817 9 C -0.235 4.235 10 C 0.569 3.431 11 O -0.529 6.529 12 N -0.699 5.699 13 C 0.165 3.835 14 H 0.089 0.911 15 C -0.146 4.146 16 C 0.126 3.874 17 N -0.599 5.599 18 C -0.268 4.268 19 H 0.088 0.912 20 C 0.029 3.971 21 N -0.901 5.901 22 Si 0.879 3.121 23 H -0.288 1.288 24 H -0.302 1.302 25 H -0.272 1.272 26 C 0.121 3.879 27 C 0.076 3.924 28 H 0.074 0.926 29 O -0.570 6.570 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.200 0.800 38 H 0.175 0.825 39 H 0.402 0.598 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.026 0.974 44 H 0.264 0.736 45 H 0.070 0.930 46 H 0.026 0.974 47 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.609 14.446 10.043 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.189 4.189 4 C 0.090 3.910 5 N -0.230 5.230 6 C 0.023 3.977 7 N -0.238 5.238 8 C 0.017 3.983 9 C -0.243 4.243 10 C 0.353 3.647 11 O -0.406 6.406 12 N -0.349 5.349 13 C 0.061 3.939 14 H 0.107 0.893 15 C -0.186 4.186 16 C 0.000 4.000 17 N -0.324 5.324 18 C -0.395 4.395 19 H 0.106 0.894 20 C -0.171 4.171 21 N -0.544 5.544 22 Si 0.710 3.290 23 H -0.216 1.216 24 H -0.230 1.230 25 H -0.198 1.198 26 C -0.006 4.006 27 C 0.015 3.985 28 H 0.092 0.908 29 O -0.375 6.375 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.217 0.783 38 H 0.192 0.808 39 H 0.238 0.762 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.043 0.957 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 5.125 15.814 10.257 19.534 hybrid contribution -0.458 -0.810 0.060 0.932 sum 4.667 15.005 10.317 18.798 Atomic orbital electron populations 1.21803 0.93247 1.02161 1.02710 1.20517 0.96732 0.97227 0.93698 1.21666 1.01298 0.93660 1.02248 1.21858 0.87110 0.88081 0.93928 1.68287 1.26555 1.29576 0.98593 1.25192 0.88047 0.86904 0.97597 1.68450 1.12220 1.14641 1.28527 1.23523 0.93547 0.94814 0.86453 1.21709 1.04091 1.01857 0.96594 1.17712 0.77970 0.82960 0.86020 1.90750 1.50896 1.51990 1.47006 1.45950 1.65511 1.06566 1.16896 1.20917 0.95320 0.95073 0.82634 0.89276 1.22419 0.96924 1.00317 0.98929 1.21336 0.94592 0.85871 0.98166 1.44281 1.29453 1.03434 1.55273 1.18883 0.93027 0.91904 1.35734 0.89427 1.25197 0.96933 0.96909 0.98075 1.69839 1.17150 1.36714 1.30658 0.87023 0.81708 0.79579 0.80726 1.21567 1.22978 1.19752 1.21559 0.88512 0.97739 0.92823 1.22705 0.86611 0.95457 0.93723 0.90792 1.86462 1.44579 1.38176 1.68239 0.91494 0.91676 0.92880 0.87068 0.91670 0.92172 0.92441 0.78345 0.80844 0.76173 0.91272 0.90115 0.90562 0.95637 0.92575 0.91125 0.95677 0.77546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.04 37.16 0.34 -1.25 16 2 C -0.06 -0.78 2.78 -91.77 -0.26 -1.04 16 3 C -0.13 -1.43 9.17 37.15 0.34 -1.09 16 4 C 0.24 3.12 5.53 -81.82 -0.45 2.67 16 5 N -0.52 -6.30 9.95 -10.48 -0.10 -6.40 16 6 C 0.31 3.33 12.27 -92.02 -1.13 2.20 16 7 N -0.52 -6.19 10.42 -14.24 -0.15 -6.34 16 8 C 0.18 2.16 10.67 -16.77 -0.18 1.98 16 9 C -0.23 -3.13 5.78 -104.69 -0.61 -3.73 16 10 C 0.57 8.39 6.91 -12.33 -0.09 8.30 16 11 O -0.53 -8.87 14.31 5.32 0.08 -8.79 16 12 N -0.70 -10.02 4.10 -54.71 -0.22 -10.24 16 13 C 0.16 2.51 2.47 -67.89 -0.17 2.35 16 14 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 15 C -0.15 -2.47 5.77 -26.63 -0.15 -2.62 16 16 C 0.13 2.56 3.95 -3.73 -0.01 2.55 16 17 N -0.60 -12.88 2.79 -172.33 -0.48 -13.36 16 18 C -0.27 -6.97 10.05 -15.06 -0.15 -7.13 16 19 H 0.09 2.42 8.04 -52.49 -0.42 2.00 16 20 C 0.03 0.79 5.22 -17.43 -0.09 0.70 16 21 N -0.90 -26.55 13.97 55.49 0.78 -25.78 16 22 Si 0.88 21.58 24.35 -169.99 -4.14 17.44 16 23 H -0.29 -6.88 6.65 56.52 0.38 -6.51 16 24 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 25 H -0.27 -6.55 6.59 56.52 0.37 -6.17 16 26 C 0.12 2.04 5.84 -3.71 -0.02 2.01 16 27 C 0.08 1.10 3.36 -26.61 -0.09 1.01 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 O -0.57 -7.10 13.21 -35.23 -0.47 -7.57 16 30 H 0.07 0.72 7.95 -51.93 -0.41 0.31 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.11 1.58 5.31 -51.93 -0.28 1.31 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.20 1.39 8.06 -52.49 -0.42 0.96 16 38 H 0.17 1.66 7.92 -52.49 -0.42 1.25 16 39 H 0.40 5.48 6.37 -40.82 -0.26 5.21 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.08 1.75 4.36 -51.93 -0.23 1.52 16 43 H 0.03 0.52 6.70 -51.93 -0.35 0.18 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.07 1.16 7.92 -51.93 -0.41 0.75 16 46 H 0.03 0.41 6.64 -51.93 -0.35 0.06 16 47 H 0.38 3.22 9.08 45.56 0.41 3.64 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -31.79 371.64 -7.92 -39.71 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.09 Total: 8.82 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -2.72 Total: 6.91 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.18 Total: -62.12 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.39 Total: -16.36 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.14 Total: 17.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.79 -7.92 -39.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090819309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.421 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds