Wall clock time and date at job start Tue Mar 31 2020 19:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47367 * 2 1 4 4 C 1.50703 * 109.46902 * 120.00530 * 2 1 3 5 5 N 1.32156 * 120.53503 * 307.24359 * 4 2 1 6 6 C 1.31859 * 120.96936 * 179.97438 * 5 4 2 7 7 N 1.31891 * 122.09224 * 0.28124 * 6 5 4 8 8 C 1.32134 * 120.96304 * 359.43403 * 7 6 5 9 9 C 1.39926 * 120.53636 * 127.22498 * 4 2 1 10 10 C 1.47834 * 120.94197 * 0.04373 * 9 4 2 11 11 O 1.21551 * 119.99857 * 39.51621 * 10 9 4 12 12 N 1.34778 * 119.99934 * 219.52157 * 10 9 4 13 13 C 1.46499 * 119.99717 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.46011 * 35.00335 * 13 12 10 15 15 C 1.53034 * 109.46002 * 275.02121 * 13 12 10 16 16 C 1.53159 * 109.32932 * 301.36366 * 15 13 12 17 17 N 1.46929 * 108.76971 * 305.35086 * 16 15 13 18 18 C 1.36931 * 120.63620 * 233.63244 * 17 16 15 19 19 H 1.08000 * 120.00329 * 154.72597 * 18 17 16 20 20 C 1.38817 * 120.00041 * 334.73182 * 18 17 16 21 21 N 1.31617 * 120.00152 * 157.73138 * 20 18 17 22 22 Si 1.86801 * 119.99662 * 337.73813 * 20 18 17 23 23 H 1.48494 * 109.47156 * 94.42337 * 22 20 18 24 24 H 1.48504 * 109.46652 * 214.42419 * 22 20 18 25 25 H 1.48501 * 109.47341 * 334.42058 * 22 20 18 26 26 C 1.46933 * 118.73218 * 53.61164 * 17 16 15 27 27 C 1.53048 * 109.45709 * 154.96828 * 13 12 10 28 28 H 1.09000 * 109.49438 * 178.63404 * 27 13 12 29 29 O 1.42894 * 109.49888 * 298.70481 * 27 13 12 30 30 H 1.09000 * 109.47173 * 299.99780 * 1 2 3 31 31 H 1.09007 * 109.47254 * 59.99313 * 1 2 3 32 32 H 1.08998 * 109.47365 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46563 * 239.99784 * 2 1 3 34 34 H 1.08994 * 109.47181 * 300.00743 * 3 2 1 35 35 H 1.09008 * 109.46623 * 60.00199 * 3 2 1 36 36 H 1.09000 * 109.47236 * 180.02562 * 3 2 1 37 37 H 1.07996 * 118.95626 * 180.02562 * 6 5 4 38 38 H 1.08002 * 120.53851 * 180.25195 * 8 7 6 39 39 H 0.97002 * 119.99717 * 359.97438 * 12 10 9 40 40 H 1.09000 * 109.49620 * 61.29959 * 15 13 12 41 41 H 1.09003 * 109.50051 * 181.39267 * 15 13 12 42 42 H 1.09001 * 109.59051 * 185.57157 * 16 15 13 43 43 H 1.09001 * 109.59296 * 65.14030 * 16 15 13 44 44 H 0.96996 * 119.99877 * 180.02562 * 21 20 18 45 45 H 1.09006 * 109.58053 * 186.60678 * 26 17 16 46 46 H 1.08995 * 109.70309 * 66.25289 * 26 17 16 47 47 H 0.96704 * 113.99962 * 180.02562 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.6066 -0.3572 2.4306 6 6 2.0400 -0.9734 3.5129 7 7 2.9146 -1.9589 3.4553 8 6 3.3886 -2.3803 2.2961 9 6 2.9567 -1.7553 1.1206 10 6 3.4630 -2.1865 -0.1997 11 8 3.7152 -1.3592 -1.0537 12 7 3.6447 -3.4971 -0.4565 13 6 4.1459 -3.9244 -1.7651 14 1 4.8587 -3.1893 -2.1387 15 6 2.9763 -4.0444 -2.7447 16 6 1.9601 -5.0524 -2.1998 17 7 2.6510 -6.3201 -1.9275 18 6 2.1926 -7.4938 -2.4634 19 1 2.8722 -8.3189 -2.6177 20 6 0.8543 -7.6232 -2.8086 21 7 0.4873 -8.5251 -3.6942 22 14 -0.4257 -6.5171 -2.0164 23 1 -0.6688 -5.3389 -2.8869 24 1 -1.6921 -7.2726 -1.8407 25 1 0.0662 -6.0607 -0.6916 26 6 3.8437 -6.3044 -1.0694 27 6 4.8389 -5.2820 -1.6271 28 1 5.1908 -5.6119 -2.6046 29 8 5.9494 -5.1623 -0.7358 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 3.1301 1.4424 -0.0005 37 1 1.6701 -0.6583 4.4774 38 1 4.1016 -3.1906 2.2567 39 1 3.4437 -4.1573 0.2252 40 1 2.4976 -3.0720 -2.8604 41 1 3.3453 -4.3861 -3.7117 42 1 1.1751 -5.2155 -2.9383 43 1 1.5232 -4.6689 -1.2777 44 1 -0.4479 -8.6152 -3.9356 45 1 4.3015 -7.2936 -1.0621 46 1 3.5623 -6.0244 -0.0542 47 1 6.4365 -5.9868 -0.6014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090819309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:53 Heat of formation + Delta-G solvation = -36.718937 kcal Electronic energy + Delta-G solvation = -30474.631232 eV Core-core repulsion = 26464.303908 eV Total energy + Delta-G solvation = -4010.327325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.52747 -41.11654 -39.45302 -37.17451 -37.07851 -35.66735 -34.33483 -33.80492 -32.96274 -31.73545 -30.63654 -28.11681 -27.34940 -26.27380 -25.90856 -24.26364 -23.78144 -22.46585 -21.91609 -20.58637 -19.24040 -19.03188 -18.70717 -18.01053 -17.74873 -17.35287 -16.85057 -16.44129 -16.15984 -15.83279 -15.70731 -15.66468 -15.45958 -15.09234 -14.96107 -14.58148 -14.40589 -14.12002 -14.09290 -13.89113 -13.43202 -13.22303 -13.11778 -13.02698 -12.86414 -12.76048 -12.56285 -12.35302 -12.20941 -12.03019 -11.83700 -11.65259 -11.60907 -11.39263 -11.20813 -10.91781 -10.75481 -10.67098 -10.39598 -10.14345 -9.01068 -8.19694 -5.49813 -0.60108 -0.13824 1.26127 1.37396 1.43939 1.54188 1.97609 2.37157 2.59988 2.85592 2.91052 3.04839 3.11403 3.18366 3.36079 3.52433 3.69891 3.80729 3.97469 4.03690 4.10437 4.12120 4.13967 4.22361 4.29941 4.37938 4.48878 4.60623 4.71150 4.73756 4.83365 4.84643 4.85008 4.89203 4.90929 5.02957 5.05828 5.14805 5.18060 5.25086 5.33230 5.40584 5.74807 5.80525 6.09401 6.34475 6.79892 6.88166 6.92212 7.00975 7.57118 7.95164 8.99462 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012082 B = 0.004294 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.014872 B = 6518.958028 C = 7282.612508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 C -0.124 4.124 4 C 0.228 3.772 5 N -0.524 5.524 6 C 0.312 3.688 7 N -0.534 5.534 8 C 0.189 3.811 9 C -0.253 4.253 10 C 0.572 3.428 11 O -0.552 6.552 12 N -0.695 5.695 13 C 0.169 3.831 14 H 0.090 0.910 15 C -0.136 4.136 16 C 0.126 3.874 17 N -0.610 5.610 18 C -0.246 4.246 19 H 0.064 0.936 20 C -0.027 4.027 21 N -0.951 5.951 22 Si 0.934 3.066 23 H -0.282 1.282 24 H -0.313 1.313 25 H -0.262 1.262 26 C 0.118 3.882 27 C 0.095 3.905 28 H 0.072 0.928 29 O -0.567 6.567 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.235 0.765 38 H 0.194 0.806 39 H 0.407 0.593 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.049 0.951 43 H 0.030 0.970 44 H 0.261 0.739 45 H 0.074 0.926 46 H 0.042 0.958 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.408 16.107 12.108 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.085 4.085 3 C -0.182 4.182 4 C 0.082 3.918 5 N -0.238 5.238 6 C 0.026 3.974 7 N -0.247 5.247 8 C 0.022 3.978 9 C -0.261 4.261 10 C 0.358 3.642 11 O -0.431 6.431 12 N -0.345 5.345 13 C 0.064 3.936 14 H 0.108 0.892 15 C -0.176 4.176 16 C 0.001 3.999 17 N -0.336 5.336 18 C -0.375 4.375 19 H 0.082 0.918 20 C -0.223 4.223 21 N -0.596 5.596 22 Si 0.764 3.236 23 H -0.209 1.209 24 H -0.243 1.243 25 H -0.186 1.186 26 C -0.008 4.008 27 C 0.034 3.966 28 H 0.090 0.910 29 O -0.374 6.374 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.251 0.749 38 H 0.211 0.789 39 H 0.244 0.756 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.060 0.940 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 5.967 17.499 12.372 22.246 hybrid contribution -0.583 -1.321 -0.512 1.532 sum 5.384 16.178 11.860 20.769 Atomic orbital electron populations 1.21763 0.92393 1.01590 1.03604 1.20510 0.97410 0.97725 0.92820 1.21614 1.00418 0.92962 1.03182 1.22021 0.87175 0.88089 0.94564 1.68357 1.26909 1.29976 0.98554 1.25960 0.86982 0.85940 0.98526 1.68556 1.12714 1.15155 1.28295 1.23847 0.93237 0.94756 0.85943 1.21630 1.05283 1.02905 0.96289 1.17886 0.77309 0.82679 0.86314 1.90738 1.51876 1.52568 1.47968 1.45873 1.65441 1.06665 1.16559 1.20785 0.94530 0.95535 0.82714 0.89235 1.22282 0.96772 0.99316 0.99267 1.21279 0.94854 0.86128 0.97635 1.44344 1.30628 1.02398 1.56231 1.18886 0.92379 0.92605 1.33669 0.91820 1.25724 0.98824 0.98651 0.99055 1.69953 1.17175 1.39555 1.32965 0.86122 0.79083 0.78063 0.80313 1.20941 1.24266 1.18627 1.21764 0.87175 0.98998 0.92854 1.22299 0.86556 0.93906 0.93827 0.90988 1.86442 1.43733 1.39749 1.67504 0.90968 0.90405 0.94115 0.89032 0.90395 0.91547 0.93676 0.74861 0.78892 0.75612 0.90831 0.90241 0.93260 0.95261 0.92972 0.90778 0.94004 0.75222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.04 71.98 0.65 -2.21 16 2 C -0.07 -1.56 2.78 -11.54 -0.03 -1.59 16 3 C -0.12 -2.55 9.17 71.98 0.66 -1.89 16 4 C 0.23 5.67 5.53 42.92 0.24 5.91 16 5 N -0.52 -11.67 9.95 -187.06 -1.86 -13.53 16 6 C 0.31 5.84 12.27 180.84 2.22 8.06 16 7 N -0.53 -11.15 10.42 -198.96 -2.07 -13.22 16 8 C 0.19 4.00 10.67 85.07 0.91 4.91 16 9 C -0.25 -6.32 5.78 -19.91 -0.12 -6.44 16 10 C 0.57 16.01 6.91 86.78 0.60 16.61 16 11 O -0.55 -18.02 14.31 -3.88 -0.06 -18.07 16 12 N -0.69 -18.43 4.10 -445.29 -1.82 -20.26 16 13 C 0.17 4.82 2.47 45.02 0.11 4.93 16 14 H 0.09 2.63 7.58 -2.39 -0.02 2.62 16 15 C -0.14 -4.45 5.77 30.66 0.18 -4.27 16 16 C 0.13 4.99 3.95 86.35 0.34 5.34 16 17 N -0.61 -25.56 2.79 -699.13 -1.95 -27.51 16 18 C -0.25 -12.87 10.05 84.04 0.84 -12.02 16 19 H 0.06 3.59 8.04 -2.91 -0.02 3.56 16 20 C -0.03 -1.51 5.22 84.86 0.44 -1.07 16 21 N -0.95 -57.56 13.97 21.65 0.30 -57.26 16 22 Si 0.93 45.08 24.35 68.60 1.67 46.75 16 23 H -0.28 -13.17 6.65 99.48 0.66 -12.51 16 24 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 25 H -0.26 -11.98 6.59 99.48 0.66 -11.32 16 26 C 0.12 3.71 5.84 86.36 0.50 4.21 16 27 C 0.10 2.52 3.36 30.67 0.10 2.63 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 O -0.57 -12.22 13.21 -148.98 -1.97 -14.19 16 30 H 0.07 1.43 7.95 -2.39 -0.02 1.41 16 31 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 2.56 5.31 -2.39 -0.01 2.55 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.24 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.19 3.13 7.92 -2.91 -0.02 3.11 16 39 H 0.41 9.97 6.37 -92.71 -0.59 9.38 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.05 2.23 4.36 -2.39 -0.01 2.22 16 43 H 0.03 1.15 6.70 -2.39 -0.02 1.13 16 44 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.07 2.29 7.92 -2.38 -0.02 2.27 16 46 H 0.04 1.22 6.64 -2.39 -0.02 1.20 16 47 H 0.40 5.33 9.08 -74.05 -0.67 4.66 16 Total: -1.00 -68.78 371.64 -0.46 -69.24 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -0.35 Total: 24.96 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 7.65 Total: 23.09 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -7.41 Total: -131.78 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -2.02 Total: -32.26 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.67 Total: 46.75 kcal Total: -68.78 -0.46 -69.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090819309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.521 kcal (2) G-P(sol) polarization free energy of solvation -68.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds