Wall clock time and date at job start Tue Mar 31 2020 19:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46900 * 2 1 4 4 C 1.50703 * 109.47372 * 119.99821 * 2 1 3 5 5 N 1.32154 * 120.53890 * 267.45057 * 4 2 1 6 6 C 1.31857 * 120.97041 * 179.97438 * 5 4 2 7 7 N 1.31884 * 122.09389 * 359.97438 * 6 5 4 8 8 C 1.32136 * 120.96510 * 359.74036 * 7 6 5 9 9 C 1.39928 * 120.53430 * 87.42606 * 4 2 1 10 10 C 1.47836 * 120.94137 * 0.02562 * 9 4 2 11 11 O 1.21555 * 119.99755 * 354.20106 * 10 9 4 12 12 N 1.34768 * 119.99953 * 174.19588 * 10 9 4 13 13 C 1.46507 * 119.99981 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.44866 * 325.03604 * 13 12 10 15 15 C 1.53038 * 109.45726 * 85.00217 * 13 12 10 16 16 C 1.53190 * 109.31260 * 181.38536 * 15 13 12 17 17 N 1.46925 * 108.77628 * 305.36245 * 16 15 13 18 18 C 1.36929 * 120.63541 * 233.62843 * 17 16 15 19 19 H 1.08001 * 119.99949 * 25.84794 * 18 17 16 20 20 C 1.38810 * 120.00663 * 205.84984 * 18 17 16 21 21 N 1.31622 * 119.99604 * 19.14858 * 20 18 17 22 22 Si 1.86791 * 120.00431 * 199.14871 * 20 18 17 23 23 H 1.48497 * 109.47335 * 59.99985 * 22 20 18 24 24 H 1.48509 * 109.47447 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47232 * 299.99640 * 22 20 18 26 26 C 1.46937 * 118.73462 * 53.60991 * 17 16 15 27 27 C 1.53037 * 109.45895 * 205.06935 * 13 12 10 28 28 H 1.09000 * 109.50082 * 58.66770 * 27 13 12 29 29 O 1.42898 * 109.49931 * 298.56418 * 27 13 12 30 30 H 1.09000 * 109.47282 * 299.99726 * 1 2 3 31 31 H 1.08997 * 109.47320 * 59.99768 * 1 2 3 32 32 H 1.08997 * 109.46763 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47282 * 240.00273 * 2 1 3 34 34 H 1.09003 * 109.46524 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46947 * 299.99578 * 3 2 1 36 36 H 1.08997 * 109.46952 * 60.00582 * 3 2 1 37 37 H 1.08000 * 118.95699 * 179.97438 * 6 5 4 38 38 H 1.08001 * 120.54094 * 180.26755 * 8 7 6 39 39 H 0.97001 * 120.00369 * 0.02562 * 12 10 9 40 40 H 1.09008 * 109.49912 * 61.43436 * 15 13 12 41 41 H 1.09000 * 109.52813 * 301.35597 * 15 13 12 42 42 H 1.08998 * 109.58554 * 65.15405 * 16 15 13 43 43 H 1.09001 * 109.58888 * 185.57927 * 16 15 13 44 44 H 0.97005 * 120.00004 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.58049 * 186.60217 * 26 17 16 46 46 H 1.08994 * 109.70495 * 66.24732 * 26 17 16 47 47 H 0.96705 * 114.00311 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.3040 -0.0337 2.3327 6 6 2.7435 -0.6466 3.4142 7 7 2.9323 -1.9513 3.4524 8 6 2.6807 -2.7058 2.3972 9 6 2.2184 -2.0972 1.2246 10 6 1.9286 -2.8979 0.0161 11 8 1.4239 -2.3704 -0.9558 12 7 2.2240 -4.2125 -0.0081 13 6 1.9373 -5.0059 -1.2059 14 1 1.0221 -4.6413 -1.6722 15 6 3.0993 -4.8763 -2.1934 16 6 2.7809 -5.6789 -3.4587 17 7 2.4667 -7.0619 -3.0749 18 6 3.1310 -8.1132 -3.6479 19 1 4.1258 -7.9720 -4.0439 20 6 2.5260 -9.3604 -3.7201 21 7 1.2196 -9.4660 -3.5989 22 14 3.5656 -10.8888 -3.9892 23 1 4.5401 -11.0267 -2.8772 24 1 2.6865 -12.0851 -4.0274 25 1 4.2967 -10.7699 -5.2762 26 6 1.4262 -7.2954 -2.0639 27 6 1.7599 -6.4746 -0.8143 28 1 0.9473 -6.5633 -0.0932 29 8 2.9703 -6.9627 -0.2323 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.9557 -0.0617 4.2970 38 1 2.8337 -3.7742 2.4374 39 1 2.6265 -4.6336 0.7676 40 1 4.0101 -5.2636 -1.7364 41 1 3.2408 -3.8274 -2.4539 42 1 1.9234 -5.2366 -3.9658 43 1 3.6448 -5.6716 -4.1233 44 1 0.7968 -10.3376 -3.6489 45 1 1.3964 -8.3546 -1.8083 46 1 0.4571 -6.9867 -2.4559 47 1 2.9298 -7.8895 0.0407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090819310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:57 Heat of formation + Delta-G solvation = -15.283758 kcal Electronic energy + Delta-G solvation = -29742.328763 eV Core-core repulsion = 25732.930938 eV Total energy + Delta-G solvation = -4009.397825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.63448 -39.66781 -38.03807 -36.28898 -34.86386 -34.39762 -33.39007 -32.39654 -31.60226 -29.40262 -29.11138 -27.26337 -25.83597 -25.15314 -24.56310 -22.52396 -21.95987 -21.14806 -20.55261 -19.56077 -18.04761 -17.84718 -17.21108 -16.95415 -15.92784 -15.62861 -15.48922 -15.06456 -14.73147 -14.58810 -14.44970 -14.16235 -13.97144 -13.86319 -13.66041 -13.30952 -13.07071 -12.84924 -12.25922 -12.21689 -12.07388 -11.88104 -11.67031 -11.43092 -11.36691 -11.24156 -11.07139 -10.83337 -10.79759 -10.63157 -10.52287 -10.23470 -10.12992 -9.88898 -9.80068 -9.55313 -9.53987 -9.26262 -8.82322 -8.53567 -6.76737 -5.86420 -3.24656 0.19277 0.72922 2.74416 3.07749 3.34690 3.40779 3.42509 3.53918 3.70092 3.75903 4.02606 4.44336 4.47689 4.59916 4.76799 4.92850 4.98714 5.04251 5.19902 5.23028 5.33451 5.38563 5.48756 5.51625 5.59845 5.74670 5.80294 5.86358 5.91029 5.95560 6.01692 6.10468 6.15047 6.20675 6.29303 6.37810 6.47179 6.62650 6.71844 6.74526 6.90618 7.10301 7.36915 7.51926 7.71462 7.73407 8.13678 8.19198 8.36459 9.12621 9.76375 10.31858 11.22455 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.002785 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.176471 B =10052.174513 C =10692.284449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.061 4.061 3 C -0.138 4.138 4 C 0.241 3.759 5 N -0.520 5.520 6 C 0.312 3.688 7 N -0.528 5.528 8 C 0.184 3.816 9 C -0.240 4.240 10 C 0.562 3.438 11 O -0.524 6.524 12 N -0.709 5.709 13 C 0.163 3.837 14 H 0.094 0.906 15 C -0.136 4.136 16 C 0.148 3.852 17 N -0.583 5.583 18 C -0.244 4.244 19 H 0.066 0.934 20 C -0.001 4.001 21 N -0.907 5.907 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.144 3.856 27 C 0.072 3.928 28 H 0.044 0.956 29 O -0.560 6.560 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.124 0.876 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.200 0.800 38 H 0.172 0.828 39 H 0.400 0.600 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.254 0.746 45 H 0.098 0.902 46 H 0.028 0.972 47 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.231 15.810 12.748 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.079 4.079 3 C -0.196 4.196 4 C 0.095 3.905 5 N -0.233 5.233 6 C 0.025 3.975 7 N -0.241 5.241 8 C 0.017 3.983 9 C -0.247 4.247 10 C 0.347 3.653 11 O -0.402 6.402 12 N -0.359 5.359 13 C 0.060 3.940 14 H 0.112 0.888 15 C -0.177 4.177 16 C 0.021 3.979 17 N -0.305 5.305 18 C -0.373 4.373 19 H 0.084 0.916 20 C -0.199 4.199 21 N -0.552 5.552 22 Si 0.732 3.268 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.017 3.983 27 C 0.011 3.989 28 H 0.062 0.938 29 O -0.366 6.366 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.141 0.859 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.216 0.784 38 H 0.189 0.811 39 H 0.235 0.765 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.116 0.884 46 H 0.046 0.954 47 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.168 17.163 12.705 21.355 hybrid contribution 0.371 -2.232 -0.143 2.267 sum 0.540 14.932 12.562 19.520 Atomic orbital electron populations 1.21627 0.92688 1.02539 1.01704 1.20605 0.97187 0.96136 0.93998 1.21749 1.00728 0.94910 1.02165 1.22017 0.85758 0.89015 0.93745 1.68361 1.14160 1.40851 0.99935 1.25223 0.88268 0.88269 0.95728 1.68446 1.18045 1.07658 1.29999 1.23511 0.87261 1.00684 0.86815 1.21744 1.08566 0.96771 0.97646 1.17765 0.78923 0.82235 0.86358 1.90723 1.43584 1.70068 1.35828 1.46154 1.62699 1.08281 1.18801 1.21091 0.99715 0.88630 0.84558 0.88811 1.22313 0.98352 0.99490 0.97510 1.20886 0.98219 0.85717 0.93041 1.43891 1.43217 1.00344 1.43014 1.19152 0.96301 0.88189 1.33687 0.91591 1.24955 0.95158 0.98750 1.01053 1.70026 1.07458 1.23300 1.54398 0.86364 0.79509 0.82625 0.78278 1.21059 1.21735 1.20927 1.21460 0.90817 1.00046 0.85991 1.22844 0.86194 0.93043 0.96804 0.93798 1.86336 1.36813 1.31372 1.82080 0.93198 0.91511 0.91998 0.85865 0.93094 0.92261 0.91689 0.78364 0.81141 0.76493 0.91151 0.92793 0.96166 0.92396 0.93571 0.88376 0.95434 0.77656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.86 37.16 0.33 -1.05 16 2 C -0.06 -0.69 2.39 -91.77 -0.22 -0.91 16 3 C -0.14 -1.34 8.73 37.16 0.32 -1.02 16 4 C 0.24 2.89 5.83 -81.82 -0.48 2.41 16 5 N -0.52 -5.75 9.33 -10.48 -0.10 -5.85 16 6 C 0.31 3.00 12.27 -92.02 -1.13 1.87 16 7 N -0.53 -5.60 10.42 -14.24 -0.15 -5.75 16 8 C 0.18 1.93 10.80 -16.77 -0.18 1.74 16 9 C -0.24 -2.88 5.91 -104.69 -0.62 -3.49 16 10 C 0.56 7.73 7.69 -12.34 -0.09 7.64 16 11 O -0.52 -8.34 12.02 5.32 0.06 -8.27 16 12 N -0.71 -9.53 5.01 -54.71 -0.27 -9.80 16 13 C 0.16 2.67 2.20 -67.89 -0.15 2.52 16 14 H 0.09 1.65 7.57 -51.93 -0.39 1.26 16 15 C -0.14 -2.43 5.51 -26.61 -0.15 -2.57 16 16 C 0.15 3.07 6.52 -3.71 -0.02 3.04 16 17 N -0.58 -13.82 2.94 -172.32 -0.51 -14.33 16 18 C -0.24 -6.42 9.59 -15.06 -0.14 -6.57 16 19 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 20 C 0.00 -0.04 4.88 -17.43 -0.09 -0.12 16 21 N -0.91 -25.06 11.17 55.49 0.62 -24.44 16 22 Si 0.90 20.95 29.59 -169.99 -5.03 15.92 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.14 3.13 4.98 -3.70 -0.02 3.11 16 27 C 0.07 1.23 3.38 -26.61 -0.09 1.14 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 O -0.56 -9.24 12.08 -35.23 -0.43 -9.66 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.76 7.28 -51.93 -0.38 0.38 16 33 H 0.12 1.63 5.67 -51.93 -0.29 1.33 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.63 7.80 -51.93 -0.41 0.22 16 37 H 0.20 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.17 1.38 6.58 -52.49 -0.35 1.03 16 39 H 0.40 4.64 6.43 -40.82 -0.26 4.37 16 40 H 0.07 1.33 7.61 -51.92 -0.40 0.94 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 44 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.10 2.36 5.95 -51.93 -0.31 2.05 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.38 5.40 9.09 45.56 0.41 5.82 16 LS Contribution 374.74 15.07 5.65 5.65 Total: -1.00 -30.32 374.74 -9.01 -39.33 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.13 Total: 9.47 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -2.72 Total: 7.74 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.41 Total: -60.17 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.36 Total: -17.94 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.32 -9.01 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090819310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.050 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds