Wall clock time and date at job start Tue Mar 31 2020 19:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46900 * 2 1 4 4 C 1.50703 * 109.47372 * 119.99821 * 2 1 3 5 5 N 1.32154 * 120.53890 * 267.45057 * 4 2 1 6 6 C 1.31857 * 120.97041 * 179.97438 * 5 4 2 7 7 N 1.31884 * 122.09389 * 359.97438 * 6 5 4 8 8 C 1.32136 * 120.96510 * 359.74036 * 7 6 5 9 9 C 1.39928 * 120.53430 * 87.42606 * 4 2 1 10 10 C 1.47836 * 120.94137 * 0.02562 * 9 4 2 11 11 O 1.21555 * 119.99755 * 354.20106 * 10 9 4 12 12 N 1.34768 * 119.99953 * 174.19588 * 10 9 4 13 13 C 1.46507 * 119.99981 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.44866 * 325.03604 * 13 12 10 15 15 C 1.53038 * 109.45726 * 85.00217 * 13 12 10 16 16 C 1.53190 * 109.31260 * 181.38536 * 15 13 12 17 17 N 1.46925 * 108.77628 * 305.36245 * 16 15 13 18 18 C 1.36929 * 120.63541 * 233.62843 * 17 16 15 19 19 H 1.08001 * 119.99949 * 25.84794 * 18 17 16 20 20 C 1.38810 * 120.00663 * 205.84984 * 18 17 16 21 21 N 1.31622 * 119.99604 * 19.14858 * 20 18 17 22 22 Si 1.86791 * 120.00431 * 199.14871 * 20 18 17 23 23 H 1.48497 * 109.47335 * 59.99985 * 22 20 18 24 24 H 1.48509 * 109.47447 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47232 * 299.99640 * 22 20 18 26 26 C 1.46937 * 118.73462 * 53.60991 * 17 16 15 27 27 C 1.53037 * 109.45895 * 205.06935 * 13 12 10 28 28 H 1.09000 * 109.50082 * 58.66770 * 27 13 12 29 29 O 1.42898 * 109.49931 * 298.56418 * 27 13 12 30 30 H 1.09000 * 109.47282 * 299.99726 * 1 2 3 31 31 H 1.08997 * 109.47320 * 59.99768 * 1 2 3 32 32 H 1.08997 * 109.46763 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47282 * 240.00273 * 2 1 3 34 34 H 1.09003 * 109.46524 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46947 * 299.99578 * 3 2 1 36 36 H 1.08997 * 109.46952 * 60.00582 * 3 2 1 37 37 H 1.08000 * 118.95699 * 179.97438 * 6 5 4 38 38 H 1.08001 * 120.54094 * 180.26755 * 8 7 6 39 39 H 0.97001 * 120.00369 * 0.02562 * 12 10 9 40 40 H 1.09008 * 109.49912 * 61.43436 * 15 13 12 41 41 H 1.09000 * 109.52813 * 301.35597 * 15 13 12 42 42 H 1.08998 * 109.58554 * 65.15405 * 16 15 13 43 43 H 1.09001 * 109.58888 * 185.57927 * 16 15 13 44 44 H 0.97005 * 120.00004 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.58049 * 186.60217 * 26 17 16 46 46 H 1.08994 * 109.70495 * 66.24732 * 26 17 16 47 47 H 0.96705 * 114.00311 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.3040 -0.0337 2.3327 6 6 2.7435 -0.6466 3.4142 7 7 2.9323 -1.9513 3.4524 8 6 2.6807 -2.7058 2.3972 9 6 2.2184 -2.0972 1.2246 10 6 1.9286 -2.8979 0.0161 11 8 1.4239 -2.3704 -0.9558 12 7 2.2240 -4.2125 -0.0081 13 6 1.9373 -5.0059 -1.2059 14 1 1.0221 -4.6413 -1.6722 15 6 3.0993 -4.8763 -2.1934 16 6 2.7809 -5.6789 -3.4587 17 7 2.4667 -7.0619 -3.0749 18 6 3.1310 -8.1132 -3.6479 19 1 4.1258 -7.9720 -4.0439 20 6 2.5260 -9.3604 -3.7201 21 7 1.2196 -9.4660 -3.5989 22 14 3.5656 -10.8888 -3.9892 23 1 4.5401 -11.0267 -2.8772 24 1 2.6865 -12.0851 -4.0274 25 1 4.2967 -10.7699 -5.2762 26 6 1.4262 -7.2954 -2.0639 27 6 1.7599 -6.4746 -0.8143 28 1 0.9473 -6.5633 -0.0932 29 8 2.9703 -6.9627 -0.2323 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.9557 -0.0617 4.2970 38 1 2.8337 -3.7742 2.4374 39 1 2.6265 -4.6336 0.7676 40 1 4.0101 -5.2636 -1.7364 41 1 3.2408 -3.8274 -2.4539 42 1 1.9234 -5.2366 -3.9658 43 1 3.6448 -5.6716 -4.1233 44 1 0.7968 -10.3376 -3.6489 45 1 1.3964 -8.3546 -1.8083 46 1 0.4571 -6.9867 -2.4559 47 1 2.9298 -7.8895 0.0407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090819310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:56 Heat of formation + Delta-G solvation = -35.849341 kcal Electronic energy + Delta-G solvation = -29743.220554 eV Core-core repulsion = 25732.930938 eV Total energy + Delta-G solvation = -4010.289616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.50409 -40.85470 -39.41115 -37.19395 -36.46327 -35.65874 -34.37252 -33.81876 -32.75501 -31.02885 -30.63689 -28.08049 -27.28057 -26.09761 -25.74771 -24.08139 -23.52073 -22.07339 -21.64224 -21.04452 -19.27725 -18.90468 -18.59758 -17.84919 -17.32363 -17.01247 -16.66685 -16.55178 -15.89391 -15.63721 -15.54489 -15.48058 -15.34304 -15.05243 -14.94813 -14.59502 -14.41299 -13.92942 -13.76205 -13.63520 -13.16164 -13.03424 -12.77769 -12.75978 -12.61289 -12.46685 -12.38844 -12.27871 -12.23232 -12.03925 -11.97054 -11.83149 -11.62670 -11.41822 -10.80489 -10.73200 -10.63698 -10.55729 -10.35982 -10.02888 -8.69287 -7.86999 -5.27922 -0.65206 -0.10376 1.49831 1.51494 1.58527 1.73198 1.96656 2.53148 2.68358 2.89976 3.03388 3.21870 3.25060 3.40354 3.54898 3.66198 3.75858 3.88720 4.02279 4.13267 4.17073 4.21889 4.36069 4.40123 4.42818 4.61589 4.63735 4.74779 4.81856 4.88672 4.94811 4.95959 4.97142 5.08275 5.11470 5.19055 5.21713 5.30959 5.42605 5.45927 5.50129 5.58230 5.66618 5.79795 6.36883 6.44880 6.91269 6.92054 7.09847 7.15789 7.84660 8.36001 9.19241 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.002785 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.176471 B =10052.174513 C =10692.284449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.062 4.062 3 C -0.130 4.130 4 C 0.234 3.766 5 N -0.527 5.527 6 C 0.316 3.684 7 N -0.536 5.536 8 C 0.192 3.808 9 C -0.254 4.254 10 C 0.565 3.435 11 O -0.548 6.548 12 N -0.700 5.700 13 C 0.172 3.828 14 H 0.081 0.919 15 C -0.120 4.120 16 C 0.145 3.855 17 N -0.598 5.598 18 C -0.255 4.255 19 H 0.062 0.938 20 C -0.046 4.046 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.283 1.283 26 C 0.148 3.852 27 C 0.090 3.910 28 H 0.071 0.929 29 O -0.561 6.561 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.235 0.765 38 H 0.194 0.806 39 H 0.412 0.588 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.014 0.986 43 H 0.054 0.946 44 H 0.251 0.749 45 H 0.074 0.926 46 H 0.005 0.995 47 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 16.682 14.804 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.081 4.081 3 C -0.188 4.188 4 C 0.087 3.913 5 N -0.241 5.241 6 C 0.030 3.970 7 N -0.250 5.250 8 C 0.025 3.975 9 C -0.262 4.262 10 C 0.352 3.648 11 O -0.428 6.428 12 N -0.351 5.351 13 C 0.067 3.933 14 H 0.099 0.901 15 C -0.160 4.160 16 C 0.019 3.981 17 N -0.321 5.321 18 C -0.385 4.385 19 H 0.079 0.921 20 C -0.241 4.241 21 N -0.580 5.580 22 Si 0.793 3.207 23 H -0.202 1.202 24 H -0.222 1.222 25 H -0.209 1.209 26 C 0.021 3.979 27 C 0.029 3.971 28 H 0.089 0.911 29 O -0.368 6.368 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.251 0.749 38 H 0.210 0.790 39 H 0.249 0.751 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.032 0.968 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.023 0.977 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.094 18.056 14.799 23.372 hybrid contribution 0.090 -2.430 -0.780 2.554 sum 1.184 15.626 14.019 21.026 Atomic orbital electron populations 1.21566 0.92399 1.01498 1.02473 1.20557 0.97413 0.96890 0.93229 1.21687 1.00412 0.93863 1.02820 1.22132 0.85695 0.89216 0.94238 1.68433 1.14762 1.40864 1.00052 1.25986 0.86459 0.88345 0.96219 1.68561 1.18472 1.08139 1.29846 1.23855 0.85843 1.01731 0.86048 1.21568 1.10490 0.96680 0.97466 1.17989 0.78151 0.82074 0.86636 1.90724 1.44591 1.70517 1.36956 1.45867 1.62904 1.08112 1.18176 1.20753 0.98514 0.88692 0.85309 0.90062 1.22079 0.98508 0.99075 0.96329 1.20967 0.97753 0.84865 0.94556 1.44115 1.43361 1.00874 1.43747 1.19396 0.96318 0.89234 1.33528 0.92052 1.25601 0.96031 1.01043 1.01452 1.70168 1.08753 1.23425 1.55703 0.85395 0.77973 0.79181 0.78174 1.20225 1.22153 1.20876 1.21352 0.89488 0.99480 0.87565 1.22515 0.87252 0.92384 0.94951 0.91142 1.86313 1.36455 1.32372 1.81689 0.92454 0.90668 0.93868 0.87855 0.93451 0.91191 0.91403 0.74888 0.78957 0.75105 0.91813 0.92071 0.96818 0.92738 0.94028 0.90762 0.97701 0.76423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 8.86 71.98 0.64 -1.92 16 2 C -0.06 -1.38 2.39 -11.54 -0.03 -1.40 16 3 C -0.13 -2.38 8.73 71.99 0.63 -1.75 16 4 C 0.23 5.29 5.83 42.92 0.25 5.55 16 5 N -0.53 -10.58 9.33 -187.06 -1.75 -12.32 16 6 C 0.32 5.18 12.27 180.84 2.22 7.40 16 7 N -0.54 -9.90 10.42 -198.97 -2.07 -11.98 16 8 C 0.19 3.55 10.80 85.07 0.92 4.47 16 9 C -0.25 -5.73 5.91 -19.91 -0.12 -5.84 16 10 C 0.57 14.97 7.69 86.78 0.67 15.64 16 11 O -0.55 -17.38 12.02 -3.89 -0.05 -17.43 16 12 N -0.70 -17.67 5.01 -445.30 -2.23 -19.90 16 13 C 0.17 5.47 2.20 45.01 0.10 5.57 16 14 H 0.08 2.85 7.57 -2.39 -0.02 2.83 16 15 C -0.12 -4.19 5.51 30.67 0.17 -4.02 16 16 C 0.14 6.06 6.52 86.36 0.56 6.62 16 17 N -0.60 -28.76 2.94 -699.10 -2.06 -30.82 16 18 C -0.25 -13.54 9.59 84.03 0.81 -12.74 16 19 H 0.06 3.25 7.89 -2.91 -0.02 3.23 16 20 C -0.05 -2.46 4.88 84.86 0.41 -2.05 16 21 N -0.93 -52.55 11.17 21.65 0.24 -52.31 16 22 Si 0.96 43.29 29.59 68.60 2.03 45.32 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 C 0.15 6.51 4.98 86.36 0.43 6.94 16 27 C 0.09 2.96 3.38 30.67 0.10 3.06 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 29 O -0.56 -17.48 12.08 -148.98 -1.80 -19.28 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.04 1.06 7.28 -2.39 -0.02 1.04 16 33 H 0.10 2.74 5.67 -2.39 -0.01 2.73 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.19 7.80 -2.39 -0.02 1.18 16 37 H 0.24 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.19 2.52 6.58 -2.91 -0.02 2.50 16 39 H 0.41 8.50 6.43 -92.71 -0.60 7.90 16 40 H 0.06 2.34 7.61 -2.38 -0.02 2.32 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.05 2.27 7.93 -2.39 -0.02 2.25 16 44 H 0.25 13.74 8.31 -92.70 -0.77 12.97 16 45 H 0.07 3.63 5.95 -2.39 -0.01 3.62 16 46 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 47 H 0.39 10.43 9.09 -74.05 -0.67 9.76 16 Total: -1.00 -65.36 374.74 -0.18 -65.53 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: -0.26 Total: 27.65 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: 7.76 Total: 25.52 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -7.86 Total: -127.32 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -1.85 Total: -36.71 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -65.36 -0.18 -65.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090819310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.684 kcal (2) G-P(sol) polarization free energy of solvation -65.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds