Wall clock time and date at job start Tue Mar 31 2020 17:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46988 * 2 1 4 4 N 1.32157 * 120.53672 * 263.40518 * 3 2 1 5 5 C 1.31861 * 120.96711 * 179.97438 * 4 3 2 6 6 N 1.31886 * 122.09151 * 0.02562 * 5 4 3 7 7 C 1.32135 * 120.97055 * 359.65704 * 6 5 4 8 8 C 1.39934 * 120.53518 * 83.38562 * 3 2 1 9 9 C 1.47830 * 120.93877 * 0.02562 * 8 3 2 10 10 O 1.21551 * 120.00240 * 354.75430 * 9 8 3 11 11 N 1.34777 * 119.99954 * 174.75549 * 9 8 3 12 12 C 1.46496 * 120.00521 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47304 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.55544 * 60.12740 * 13 12 11 15 15 C 1.53297 * 109.51097 * 180.25376 * 13 12 11 16 16 N 1.47229 * 108.40619 * 172.22832 * 15 13 12 17 17 C 1.36932 * 121.03188 * 129.46153 * 16 15 13 18 18 H 1.08000 * 120.00248 * 200.61712 * 17 16 15 19 19 C 1.38813 * 120.00398 * 20.61970 * 17 16 15 20 20 N 1.31625 * 119.99877 * 21.54423 * 19 17 16 21 21 Si 1.86795 * 120.00371 * 201.55170 * 19 17 16 22 22 H 1.48504 * 109.47238 * 89.99637 * 21 19 17 23 23 H 1.48506 * 109.47178 * 209.99656 * 21 19 17 24 24 H 1.48497 * 109.47375 * 329.99770 * 21 19 17 25 25 C 1.47151 * 117.98806 * 309.48779 * 16 15 13 26 26 C 1.53292 * 108.41586 * 50.51539 * 25 16 15 27 27 O 1.42960 * 109.51491 * 299.99682 * 13 12 11 28 28 H 1.09000 * 109.47005 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47511 * 300.00357 * 1 2 3 30 30 H 1.09010 * 109.47179 * 60.00105 * 1 2 3 31 31 H 1.08993 * 109.47409 * 240.00111 * 2 1 3 32 32 H 1.09001 * 109.47002 * 119.99674 * 2 1 3 33 33 H 1.07992 * 118.95408 * 180.02562 * 5 4 3 34 34 H 1.07998 * 120.53712 * 180.30623 * 7 6 5 35 35 H 0.97008 * 119.99756 * 0.02562 * 11 9 8 36 36 H 1.09003 * 109.47053 * 59.99392 * 12 11 9 37 37 H 1.09002 * 109.46604 * 300.00198 * 12 11 9 38 38 H 1.08994 * 109.46974 * 299.87094 * 14 13 12 39 39 H 1.08992 * 109.47067 * 59.87453 * 14 13 12 40 40 H 1.09005 * 109.47058 * 179.87394 * 14 13 12 41 41 H 1.09006 * 109.68247 * 291.94730 * 15 13 12 42 42 H 1.08996 * 109.68526 * 52.49989 * 15 13 12 43 43 H 0.96995 * 119.99987 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.67973 * 290.77541 * 25 16 15 45 45 H 1.08998 * 109.68543 * 170.25962 * 25 16 15 46 46 H 1.08996 * 109.51361 * 67.60397 * 26 25 16 47 47 H 1.09006 * 109.51174 * 187.71144 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3794 2.0104 -1.1307 5 6 2.8195 3.2533 -1.1406 6 7 2.9354 3.9644 -0.0360 7 6 2.6049 3.4558 1.1379 8 6 2.1384 2.1374 1.1973 9 6 1.7626 1.5215 2.4875 10 8 1.2655 0.4125 2.5097 11 7 1.9711 2.1897 3.6393 12 6 1.5992 1.5792 4.9180 13 6 1.9382 2.5398 6.0595 14 6 1.1623 3.8458 5.8773 15 6 1.5552 1.8992 7.3985 16 7 2.0594 2.7557 8.4847 17 6 1.2403 3.1552 9.5068 18 1 1.4980 4.0212 10.0983 19 6 0.0788 2.4469 9.7827 20 7 -0.0397 1.1972 9.3869 21 14 -1.3162 3.2673 10.7156 22 1 -2.2389 3.9205 9.7526 23 1 -2.0581 2.2450 11.4965 24 1 -0.7606 4.2888 11.6392 25 6 3.4705 3.1704 8.4387 26 6 3.7602 3.7491 7.0491 27 8 3.3414 2.8131 6.0528 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.0937 3.7033 -2.0832 34 1 2.6980 4.0460 2.0376 35 1 2.3674 3.0749 3.6215 36 1 2.1505 0.6482 5.0501 37 1 0.5291 1.3717 4.9239 38 1 1.4384 4.3029 4.9272 39 1 0.0926 3.6366 5.8826 40 1 1.4031 4.5283 6.6925 41 1 0.4706 1.8172 7.4694 42 1 2.0044 0.9089 7.4736 43 1 -0.8511 0.7022 9.5800 44 1 4.1126 2.3081 8.6184 45 1 3.6550 3.9300 9.1984 46 1 3.2140 4.6838 6.9228 47 1 4.8294 3.9355 6.9479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108403049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:55 Heat of formation + Delta-G solvation = -2.915333 kcal Electronic energy + Delta-G solvation = -29712.425564 eV Core-core repulsion = 25703.564074 eV Total energy + Delta-G solvation = -4008.861490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.59451 -39.70631 -38.78282 -35.70857 -34.76028 -34.37565 -33.28104 -32.04677 -31.32512 -30.84178 -28.02813 -26.83377 -26.05455 -25.21370 -24.81442 -23.30099 -22.14815 -21.47679 -20.80128 -18.88922 -18.13701 -17.92700 -17.17488 -16.92980 -15.98230 -15.73250 -15.37756 -15.13979 -14.73013 -14.49854 -14.36571 -14.21452 -14.08040 -14.05609 -13.61742 -13.53186 -13.08715 -12.86198 -12.70117 -12.59212 -12.02775 -11.89809 -11.70971 -11.65353 -11.27512 -11.12872 -11.09871 -10.88572 -10.88098 -10.72283 -10.37998 -10.28974 -10.01424 -9.91302 -9.79159 -9.60855 -9.58240 -9.16762 -8.95866 -8.56561 -6.87647 -5.90578 -3.27684 0.17045 0.70578 2.72097 3.03284 3.31018 3.38770 3.40046 3.51638 3.69417 3.74100 4.04212 4.15220 4.39079 4.46042 4.64831 4.92502 5.06035 5.08807 5.25138 5.26360 5.30023 5.38334 5.43194 5.55151 5.59332 5.84289 5.85344 5.85917 5.91303 5.92031 5.98917 6.05524 6.08192 6.15826 6.24086 6.35542 6.46855 6.57531 6.59717 6.67419 6.74833 7.01262 7.39239 7.43325 7.64930 7.69078 7.79455 8.10695 8.23864 9.04188 9.68804 10.23111 11.17452 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.002917 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.022095 B = 9597.482428 C =10337.856663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C 0.237 3.763 4 N -0.524 5.524 5 C 0.314 3.686 6 N -0.527 5.527 7 C 0.185 3.815 8 C -0.238 4.238 9 C 0.562 3.438 10 O -0.524 6.524 11 N -0.708 5.708 12 C 0.141 3.859 13 C 0.077 3.923 14 C -0.163 4.163 15 C 0.155 3.845 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.071 0.929 19 C 0.001 3.999 20 N -0.900 5.900 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.385 6.385 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.201 0.799 34 H 0.171 0.829 35 H 0.400 0.600 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.028 0.972 43 H 0.256 0.744 44 H 0.026 0.974 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.716 3.600 -17.712 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.121 4.121 3 C 0.091 3.909 4 N -0.238 5.238 5 C 0.027 3.973 6 N -0.241 5.241 7 C 0.018 3.982 8 C -0.246 4.246 9 C 0.347 3.653 10 O -0.402 6.402 11 N -0.359 5.359 12 C 0.017 3.983 13 C 0.036 3.964 14 C -0.220 4.220 15 C 0.029 3.971 16 N -0.315 5.315 17 C -0.381 4.381 18 H 0.089 0.911 19 C -0.198 4.198 20 N -0.545 5.545 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.305 6.305 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.217 0.783 34 H 0.188 0.812 35 H 0.236 0.764 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.605 3.030 -18.595 19.395 hybrid contribution -0.786 0.766 1.515 1.871 sum 3.819 3.796 -17.080 17.909 Atomic orbital electron populations 1.21570 0.93049 1.02642 1.01784 1.20847 0.97515 0.88845 1.04877 1.22054 0.85781 0.96693 0.86391 1.68415 1.13637 1.12173 1.29598 1.25223 0.88577 0.86408 0.97134 1.68450 1.17928 1.38540 0.99180 1.23502 0.87021 0.91090 0.96581 1.21702 1.08464 0.97764 0.96676 1.17714 0.79190 0.85412 0.82994 1.90751 1.43673 1.18898 1.86844 1.45895 1.63096 1.20967 1.05977 1.21434 1.01008 0.96256 0.79565 1.22560 0.81781 0.94862 0.97161 1.22216 1.00774 0.98198 1.00816 1.21400 1.02061 0.91394 0.82284 1.44087 1.04531 1.58962 1.23936 1.19207 1.01818 1.07371 1.09745 0.91079 1.24893 1.00257 0.94876 0.99751 1.70050 1.27204 1.07018 1.50200 0.86304 0.82647 0.78683 0.79291 1.21399 1.21732 1.20476 1.21581 0.87609 0.97800 0.94741 1.23043 0.98436 0.91864 0.89851 1.87807 1.23298 1.64037 1.55341 0.91538 0.91670 0.93382 0.90264 0.86889 0.78293 0.81196 0.76397 0.90432 0.89637 0.94089 0.91764 0.90646 0.87816 0.95346 0.93410 0.95628 0.91998 0.93287 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.51 37.16 0.35 -1.06 16 2 C -0.08 -0.92 5.49 -27.88 -0.15 -1.07 16 3 C 0.24 2.81 6.12 -81.82 -0.50 2.31 16 4 N -0.52 -5.87 10.36 -10.48 -0.11 -5.97 16 5 C 0.31 3.01 12.27 -92.02 -1.13 1.88 16 6 N -0.53 -5.55 10.42 -14.24 -0.15 -5.70 16 7 C 0.19 1.91 10.80 -16.77 -0.18 1.72 16 8 C -0.24 -2.81 5.91 -104.69 -0.62 -3.43 16 9 C 0.56 7.54 7.73 -12.34 -0.10 7.44 16 10 O -0.52 -8.15 12.00 5.32 0.06 -8.09 16 11 N -0.71 -9.20 5.11 -61.26 -0.31 -9.51 16 12 C 0.14 2.20 4.82 -4.05 -0.02 2.18 16 13 C 0.08 1.34 0.76 -90.47 -0.07 1.27 16 14 C -0.16 -2.60 7.92 37.16 0.29 -2.30 16 15 C 0.16 3.45 4.21 -3.49 -0.01 3.43 16 16 N -0.59 -13.85 2.59 -171.77 -0.44 -14.29 16 17 C -0.25 -6.51 9.68 -15.06 -0.15 -6.66 16 18 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 19 C 0.00 0.02 4.89 -17.43 -0.09 -0.07 16 20 N -0.90 -24.89 11.04 55.49 0.61 -24.28 16 21 Si 0.90 20.79 29.60 -169.99 -5.03 15.76 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 C 0.11 2.14 6.73 -3.54 -0.02 2.11 16 26 C 0.05 0.75 6.60 37.31 0.25 0.99 16 27 O -0.39 -6.62 9.97 -35.23 -0.35 -6.97 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.81 6.87 -51.93 -0.36 0.45 16 30 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.11 1.40 5.95 -51.93 -0.31 1.09 16 33 H 0.20 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.17 1.35 6.57 -52.49 -0.35 1.00 16 35 H 0.40 4.51 5.38 -40.82 -0.22 4.29 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.04 0.53 6.88 -51.93 -0.36 0.17 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.34 6.11 -51.93 -0.32 1.02 16 41 H 0.10 2.56 5.85 -51.93 -0.30 2.26 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 46 H 0.05 0.77 6.25 -51.93 -0.32 0.44 16 47 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -30.05 371.17 -8.99 -39.04 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.72 Total: 5.68 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -2.14 Total: 8.75 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.40 Total: -59.76 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.29 Total: -15.06 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.05 -8.99 -39.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108403049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.123 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds