Wall clock time and date at job start Tue Mar 31 2020 17:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46988 * 2 1 4 4 N 1.32157 * 120.53672 * 263.40518 * 3 2 1 5 5 C 1.31861 * 120.96711 * 179.97438 * 4 3 2 6 6 N 1.31886 * 122.09151 * 0.02562 * 5 4 3 7 7 C 1.32135 * 120.97055 * 359.65704 * 6 5 4 8 8 C 1.39934 * 120.53518 * 83.38562 * 3 2 1 9 9 C 1.47830 * 120.93877 * 0.02562 * 8 3 2 10 10 O 1.21551 * 120.00240 * 354.75430 * 9 8 3 11 11 N 1.34777 * 119.99954 * 174.75549 * 9 8 3 12 12 C 1.46496 * 120.00521 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47304 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.55544 * 60.12740 * 13 12 11 15 15 C 1.53297 * 109.51097 * 180.25376 * 13 12 11 16 16 N 1.47229 * 108.40619 * 172.22832 * 15 13 12 17 17 C 1.36932 * 121.03188 * 129.46153 * 16 15 13 18 18 H 1.08000 * 120.00248 * 200.61712 * 17 16 15 19 19 C 1.38813 * 120.00398 * 20.61970 * 17 16 15 20 20 N 1.31625 * 119.99877 * 21.54423 * 19 17 16 21 21 Si 1.86795 * 120.00371 * 201.55170 * 19 17 16 22 22 H 1.48504 * 109.47238 * 89.99637 * 21 19 17 23 23 H 1.48506 * 109.47178 * 209.99656 * 21 19 17 24 24 H 1.48497 * 109.47375 * 329.99770 * 21 19 17 25 25 C 1.47151 * 117.98806 * 309.48779 * 16 15 13 26 26 C 1.53292 * 108.41586 * 50.51539 * 25 16 15 27 27 O 1.42960 * 109.51491 * 299.99682 * 13 12 11 28 28 H 1.09000 * 109.47005 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47511 * 300.00357 * 1 2 3 30 30 H 1.09010 * 109.47179 * 60.00105 * 1 2 3 31 31 H 1.08993 * 109.47409 * 240.00111 * 2 1 3 32 32 H 1.09001 * 109.47002 * 119.99674 * 2 1 3 33 33 H 1.07992 * 118.95408 * 180.02562 * 5 4 3 34 34 H 1.07998 * 120.53712 * 180.30623 * 7 6 5 35 35 H 0.97008 * 119.99756 * 0.02562 * 11 9 8 36 36 H 1.09003 * 109.47053 * 59.99392 * 12 11 9 37 37 H 1.09002 * 109.46604 * 300.00198 * 12 11 9 38 38 H 1.08994 * 109.46974 * 299.87094 * 14 13 12 39 39 H 1.08992 * 109.47067 * 59.87453 * 14 13 12 40 40 H 1.09005 * 109.47058 * 179.87394 * 14 13 12 41 41 H 1.09006 * 109.68247 * 291.94730 * 15 13 12 42 42 H 1.08996 * 109.68526 * 52.49989 * 15 13 12 43 43 H 0.96995 * 119.99987 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.67973 * 290.77541 * 25 16 15 45 45 H 1.08998 * 109.68543 * 170.25962 * 25 16 15 46 46 H 1.08996 * 109.51361 * 67.60397 * 26 25 16 47 47 H 1.09006 * 109.51174 * 187.71144 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3794 2.0104 -1.1307 5 6 2.8195 3.2533 -1.1406 6 7 2.9354 3.9644 -0.0360 7 6 2.6049 3.4558 1.1379 8 6 2.1384 2.1374 1.1973 9 6 1.7626 1.5215 2.4875 10 8 1.2655 0.4125 2.5097 11 7 1.9711 2.1897 3.6393 12 6 1.5992 1.5792 4.9180 13 6 1.9382 2.5398 6.0595 14 6 1.1623 3.8458 5.8773 15 6 1.5552 1.8992 7.3985 16 7 2.0594 2.7557 8.4847 17 6 1.2403 3.1552 9.5068 18 1 1.4980 4.0212 10.0983 19 6 0.0788 2.4469 9.7827 20 7 -0.0397 1.1972 9.3869 21 14 -1.3162 3.2673 10.7156 22 1 -2.2389 3.9205 9.7526 23 1 -2.0581 2.2450 11.4965 24 1 -0.7606 4.2888 11.6392 25 6 3.4705 3.1704 8.4387 26 6 3.7602 3.7491 7.0491 27 8 3.3414 2.8131 6.0528 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.0937 3.7033 -2.0832 34 1 2.6980 4.0460 2.0376 35 1 2.3674 3.0749 3.6215 36 1 2.1505 0.6482 5.0501 37 1 0.5291 1.3717 4.9239 38 1 1.4384 4.3029 4.9272 39 1 0.0926 3.6366 5.8826 40 1 1.4031 4.5283 6.6925 41 1 0.4706 1.8172 7.4694 42 1 2.0044 0.9089 7.4736 43 1 -0.8511 0.7022 9.5800 44 1 4.1126 2.3081 8.6184 45 1 3.6550 3.9300 9.1984 46 1 3.2140 4.6838 6.9228 47 1 4.8294 3.9355 6.9479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108403049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:54 Heat of formation + Delta-G solvation = -21.938588 kcal Electronic energy + Delta-G solvation = -29713.250474 eV Core-core repulsion = 25703.564074 eV Total energy + Delta-G solvation = -4009.686401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.44926 -40.97331 -40.03900 -36.81847 -36.24415 -35.61876 -34.19142 -33.28560 -33.13703 -31.81584 -29.56851 -28.13297 -27.61312 -26.03774 -25.91675 -24.96840 -23.15319 -22.80248 -21.95358 -20.36035 -19.13590 -19.03857 -18.65069 -17.88461 -17.40456 -16.94116 -16.65524 -16.43544 -16.14876 -15.79073 -15.55749 -15.45633 -15.25335 -15.12143 -14.91514 -14.75567 -14.59724 -14.18023 -13.97287 -13.53410 -13.43433 -13.18776 -12.92838 -12.79441 -12.76437 -12.55055 -12.50479 -12.43031 -12.12216 -12.02866 -11.93669 -11.78706 -11.70244 -11.15013 -10.85584 -10.78281 -10.74544 -10.45595 -10.39669 -10.11195 -8.77137 -7.89179 -5.28913 -0.66003 -0.11513 1.46877 1.49323 1.57121 1.73059 1.93971 2.49492 2.67370 2.79376 2.91013 3.03398 3.23482 3.24520 3.49512 3.57961 3.73287 3.94210 4.02107 4.11634 4.21876 4.26006 4.39304 4.43479 4.47667 4.48594 4.59201 4.65008 4.72219 4.74216 4.80463 4.97503 5.01142 5.05619 5.08921 5.13947 5.22732 5.23032 5.26318 5.38596 5.40547 5.55504 5.63953 5.78286 6.27530 6.37439 6.40121 6.90099 7.06612 7.07736 7.78440 8.29656 9.16485 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.002917 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.022095 B = 9597.482428 C =10337.856663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C 0.229 3.771 4 N -0.535 5.535 5 C 0.317 3.683 6 N -0.535 5.535 7 C 0.193 3.807 8 C -0.252 4.252 9 C 0.565 3.435 10 O -0.550 6.550 11 N -0.698 5.698 12 C 0.152 3.848 13 C 0.093 3.907 14 C -0.155 4.155 15 C 0.162 3.838 16 N -0.608 5.608 17 C -0.256 4.256 18 H 0.075 0.925 19 C -0.051 4.051 20 N -0.934 5.934 21 Si 0.962 3.038 22 H -0.284 1.284 23 H -0.300 1.300 24 H -0.269 1.269 25 C 0.101 3.899 26 C 0.053 3.947 27 O -0.385 6.385 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.236 0.764 34 H 0.195 0.805 35 H 0.411 0.589 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.075 0.925 42 H -0.007 1.007 43 H 0.250 0.750 44 H 0.013 0.987 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.655 6.064 -19.512 21.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 C 0.083 3.917 4 N -0.250 5.250 5 C 0.031 3.969 6 N -0.249 5.249 7 C 0.026 3.974 8 C -0.260 4.260 9 C 0.351 3.649 10 O -0.429 6.429 11 N -0.350 5.350 12 C 0.028 3.972 13 C 0.052 3.948 14 C -0.212 4.212 15 C 0.035 3.965 16 N -0.332 5.332 17 C -0.385 4.385 18 H 0.093 0.907 19 C -0.246 4.246 20 N -0.580 5.580 21 Si 0.791 3.209 22 H -0.211 1.211 23 H -0.227 1.227 24 H -0.194 1.194 25 C -0.024 4.024 26 C -0.025 4.025 27 O -0.304 6.304 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.252 0.748 34 H 0.212 0.788 35 H 0.249 0.751 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.011 0.989 43 H 0.059 0.941 44 H 0.031 0.969 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.583 5.537 -20.416 21.877 hybrid contribution -0.979 -0.007 2.065 2.285 sum 4.604 5.530 -18.351 19.711 Atomic orbital electron populations 1.21508 0.92883 1.03016 1.01044 1.20797 0.97615 0.88891 1.04622 1.22168 0.85754 0.96952 0.86828 1.68485 1.14329 1.13010 1.29135 1.25984 0.86835 0.85783 0.98266 1.68569 1.18321 1.38597 0.99409 1.23870 0.85545 0.90428 0.97527 1.21521 1.10260 0.98666 0.95517 1.17947 0.78458 0.85013 0.83493 1.90749 1.44777 1.20159 1.87247 1.45653 1.63202 1.21328 1.04835 1.21087 1.00354 0.95339 0.80462 1.22199 0.82339 0.95523 0.94744 1.22131 0.99971 0.96876 1.02261 1.21185 0.99951 0.90361 0.84993 1.44345 1.06131 1.58887 1.23848 1.19530 1.02134 1.07021 1.09846 0.90717 1.25594 1.02367 0.95284 1.01356 1.70207 1.27366 1.08347 1.52096 0.85341 0.79855 0.77580 0.78167 1.21092 1.22709 1.19365 1.21811 0.85244 0.97666 0.97688 1.23105 1.00790 0.91533 0.87041 1.87821 1.22759 1.64487 1.55350 0.90686 0.93678 0.92644 0.89043 0.88517 0.74813 0.78832 0.75057 0.92079 0.90333 0.90298 0.92613 0.91999 0.90699 0.98940 0.94078 0.96945 0.91057 0.91988 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.51 71.98 0.68 -1.98 16 2 C -0.08 -1.77 5.49 29.85 0.16 -1.61 16 3 C 0.23 5.15 6.12 42.92 0.26 5.41 16 4 N -0.54 -10.86 10.36 -187.06 -1.94 -12.80 16 5 C 0.32 5.16 12.27 180.84 2.22 7.37 16 6 N -0.54 -9.63 10.42 -198.97 -2.07 -11.71 16 7 C 0.19 3.45 10.80 85.07 0.92 4.37 16 8 C -0.25 -5.55 5.91 -19.91 -0.12 -5.67 16 9 C 0.56 14.76 7.73 86.78 0.67 15.43 16 10 O -0.55 -17.39 12.00 -3.87 -0.05 -17.43 16 11 N -0.70 -17.21 5.11 -466.00 -2.38 -19.59 16 12 C 0.15 4.78 4.82 86.38 0.42 5.20 16 13 C 0.09 3.18 0.76 -10.70 -0.01 3.17 16 14 C -0.16 -4.69 7.92 71.98 0.57 -4.12 16 15 C 0.16 7.44 4.21 86.34 0.36 7.80 16 16 N -0.61 -28.78 2.59 -697.35 -1.80 -30.59 16 17 C -0.26 -13.29 9.68 84.03 0.81 -12.48 16 18 H 0.08 3.76 7.88 -2.91 -0.02 3.73 16 19 C -0.05 -2.73 4.89 84.86 0.41 -2.31 16 20 N -0.93 -53.62 11.04 21.65 0.24 -53.38 16 21 Si 0.96 43.30 29.60 68.60 2.03 45.33 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 C 0.10 3.89 6.73 86.35 0.58 4.47 16 26 C 0.05 1.56 6.60 72.08 0.48 2.04 16 27 O -0.38 -12.48 9.97 -148.98 -1.49 -13.96 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.13 6.87 -2.39 -0.02 1.11 16 30 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 2.44 5.95 -2.39 -0.01 2.42 16 33 H 0.24 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.20 2.34 6.57 -2.91 -0.02 2.32 16 35 H 0.41 8.11 5.38 -92.70 -0.50 7.61 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.08 1.77 6.88 -2.39 -0.02 1.76 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 40 H 0.06 2.07 6.11 -2.38 -0.01 2.05 16 41 H 0.07 3.88 5.85 -2.38 -0.01 3.87 16 42 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 44 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 45 H 0.07 2.56 7.94 -2.39 -0.02 2.54 16 46 H 0.06 1.73 6.25 -2.39 -0.01 1.71 16 47 H 0.12 2.69 8.14 -2.38 -0.02 2.67 16 Total: -1.00 -66.76 371.17 1.47 -65.29 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.50 Total: 21.74 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: 8.43 Total: 27.11 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -7.96 Total: -128.07 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.53 Total: -31.40 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -66.76 1.47 -65.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108403049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.351 kcal (2) G-P(sol) polarization free energy of solvation -66.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds