Wall clock time and date at job start Tue Mar 31 2020 17:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47251 * 2 1 4 4 N 1.32153 * 120.54108 * 263.92887 * 3 2 1 5 5 C 1.31850 * 120.97291 * 180.02562 * 4 3 2 6 6 N 1.31883 * 122.09374 * 359.73246 * 5 4 3 7 7 C 1.32134 * 120.96322 * 0.53099 * 6 5 4 8 8 C 1.39933 * 120.53389 * 83.94300 * 3 2 1 9 9 C 1.47831 * 120.94103 * 359.96305 * 8 3 2 10 10 O 1.21555 * 120.00113 * 354.65773 * 9 8 3 11 11 N 1.34776 * 120.00158 * 174.66459 * 9 8 3 12 12 C 1.46495 * 120.00126 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47051 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.51702 * 305.00244 * 13 12 11 15 15 C 1.53292 * 109.51307 * 184.89951 * 13 12 11 16 16 N 1.47158 * 108.38546 * 187.77565 * 15 13 12 17 17 C 1.36939 * 120.98210 * 230.50903 * 16 15 13 18 18 H 1.07993 * 119.99674 * 145.95407 * 17 16 15 19 19 C 1.38815 * 120.00107 * 325.95808 * 17 16 15 20 20 N 1.31622 * 119.99777 * 359.62731 * 19 17 16 21 21 Si 1.86797 * 120.00010 * 179.62956 * 19 17 16 22 22 H 1.48500 * 109.46898 * 59.99649 * 21 19 17 23 23 H 1.48498 * 109.47125 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46781 * 300.00239 * 21 19 17 25 25 C 1.47149 * 118.03562 * 50.53794 * 16 15 13 26 26 C 1.53299 * 108.38341 * 309.46280 * 25 16 15 27 27 O 1.42956 * 109.26528 * 52.27965 * 26 25 16 28 28 H 1.08996 * 109.47460 * 59.99144 * 1 2 3 29 29 H 1.08999 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46579 * 299.99383 * 1 2 3 31 31 H 1.09000 * 109.46579 * 240.00617 * 2 1 3 32 32 H 1.08996 * 109.47460 * 120.00856 * 2 1 3 33 33 H 1.08005 * 118.95706 * 179.97438 * 5 4 3 34 34 H 1.08002 * 120.53883 * 179.76437 * 7 6 5 35 35 H 0.97006 * 119.99868 * 359.97438 * 11 9 8 36 36 H 1.08998 * 109.47168 * 299.99915 * 12 11 9 37 37 H 1.08997 * 109.46970 * 59.99834 * 12 11 9 38 38 H 1.08997 * 109.47120 * 59.99792 * 14 13 12 39 39 H 1.08993 * 109.47297 * 179.97438 * 14 13 12 40 40 H 1.09002 * 109.46485 * 300.00003 * 14 13 12 41 41 H 1.09008 * 109.68288 * 307.49506 * 15 13 12 42 42 H 1.08994 * 109.68456 * 68.01254 * 15 13 12 43 43 H 0.97005 * 119.99575 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.68589 * 69.18293 * 25 16 15 45 45 H 1.08992 * 109.68290 * 189.74392 * 25 16 15 46 46 H 1.08998 * 109.51334 * 172.22437 * 26 25 16 47 47 H 1.09001 * 109.51095 * 292.33332 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3698 2.0138 -1.1318 5 6 2.8107 3.2563 -1.1416 6 7 2.9318 3.9656 -0.0364 7 6 2.6221 3.4496 1.1399 8 6 2.1495 2.1334 1.1986 9 6 1.7842 1.5138 2.4901 10 8 1.2846 0.4059 2.5129 11 7 2.0049 2.1774 3.6422 12 6 1.6424 1.5636 4.9220 13 6 1.9956 2.5186 6.0639 14 6 3.4733 2.9038 5.9695 15 6 1.7308 1.8302 7.4077 16 7 1.8974 2.8247 8.4795 17 6 2.6911 2.5652 9.5648 18 1 3.2481 3.3650 10.0300 19 6 2.7797 1.2741 10.0670 20 7 2.0951 0.3008 9.5045 21 14 3.8704 0.9182 11.5411 22 1 3.4128 1.7240 12.7015 23 1 3.7902 -0.5256 11.8791 24 1 5.2749 1.2735 11.2149 25 6 1.1854 4.1061 8.3508 26 6 1.4768 4.6837 6.9610 27 8 1.1887 3.6950 5.9695 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.0777 3.7090 -2.0852 34 1 2.7275 4.0354 2.0411 35 1 2.4038 3.0614 3.6240 36 1 0.5718 1.3594 4.9367 37 1 2.1919 0.6305 5.0461 38 1 3.6606 3.3948 5.0146 39 1 3.7241 3.5845 6.7830 40 1 4.0880 2.0066 6.0434 41 1 0.7137 1.4384 7.4254 42 1 2.4406 1.0152 7.5489 43 1 2.1573 -0.6015 9.8553 44 1 0.1135 3.9434 8.4633 45 1 1.5345 4.7986 9.1167 46 1 0.8519 5.5608 6.7929 47 1 2.5273 4.9674 6.8977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108403050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:58 Heat of formation + Delta-G solvation = -5.053378 kcal Electronic energy + Delta-G solvation = -29654.776515 eV Core-core repulsion = 25645.822312 eV Total energy + Delta-G solvation = -4008.954203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.58943 -39.68778 -38.74955 -35.70370 -34.73828 -34.34351 -33.27085 -32.00467 -31.31761 -30.82437 -27.99740 -26.83102 -26.03123 -25.21029 -24.80322 -23.24752 -22.14181 -21.47744 -20.76849 -18.85748 -18.13614 -17.91273 -17.16921 -16.91366 -15.96773 -15.66095 -15.43330 -15.14280 -14.66795 -14.51583 -14.35852 -14.23049 -14.10533 -14.00891 -13.54819 -13.49166 -13.06791 -12.82245 -12.68828 -12.54913 -11.99706 -11.89441 -11.70582 -11.65205 -11.26031 -11.12287 -10.96032 -10.93866 -10.87827 -10.69829 -10.35892 -10.30261 -10.11268 -9.90996 -9.78103 -9.60145 -9.57525 -9.06302 -8.95053 -8.59753 -6.67984 -5.89987 -3.43497 0.17639 0.71100 2.73221 3.04746 3.30549 3.36673 3.36918 3.52124 3.70014 3.74746 4.04922 4.19023 4.37685 4.46706 4.64994 4.93203 5.08764 5.11734 5.25677 5.27818 5.30490 5.41206 5.48788 5.56071 5.61387 5.85867 5.86381 5.88754 5.92293 5.94296 6.01234 6.07732 6.09363 6.17340 6.27090 6.38685 6.49766 6.60000 6.61628 6.69899 6.78646 7.06437 7.43327 7.48505 7.65972 7.69643 7.83669 8.11671 8.34595 9.08379 9.66972 10.27823 11.16892 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019015 B = 0.002803 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.164090 B = 9988.615944 C =10605.159560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 C 0.237 3.763 4 N -0.524 5.524 5 C 0.313 3.687 6 N -0.527 5.527 7 C 0.185 3.815 8 C -0.239 4.239 9 C 0.562 3.438 10 O -0.524 6.524 11 N -0.709 5.709 12 C 0.140 3.860 13 C 0.075 3.925 14 C -0.161 4.161 15 C 0.161 3.839 16 N -0.591 5.591 17 C -0.258 4.258 18 H 0.065 0.935 19 C 0.011 3.989 20 N -0.903 5.903 21 Si 0.906 3.094 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.385 6.385 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.201 0.799 34 H 0.171 0.829 35 H 0.399 0.601 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.039 0.961 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.029 0.971 42 H 0.101 0.899 43 H 0.257 0.743 44 H 0.026 0.974 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 5.037 -17.654 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.121 4.121 3 C 0.091 3.909 4 N -0.238 5.238 5 C 0.026 3.974 6 N -0.241 5.241 7 C 0.018 3.982 8 C -0.246 4.246 9 C 0.347 3.653 10 O -0.402 6.402 11 N -0.361 5.361 12 C 0.017 3.983 13 C 0.034 3.966 14 C -0.219 4.219 15 C 0.034 3.966 16 N -0.315 5.315 17 C -0.387 4.387 18 H 0.082 0.918 19 C -0.188 4.188 20 N -0.547 5.547 21 Si 0.735 3.265 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.209 1.209 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.305 6.305 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.217 0.783 34 H 0.188 0.812 35 H 0.236 0.764 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.119 0.881 43 H 0.068 0.932 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.511 4.501 -18.542 19.088 hybrid contribution 0.748 0.081 1.806 1.956 sum 1.259 4.582 -16.737 17.398 Atomic orbital electron populations 1.21564 0.93063 1.02623 1.01787 1.20856 0.97525 0.88845 1.04911 1.22051 0.85808 0.96662 0.86397 1.68405 1.13671 1.12130 1.29624 1.25221 0.88526 0.86443 0.97167 1.68451 1.18095 1.38425 0.99126 1.23508 0.87101 0.90997 0.96616 1.21709 1.08392 0.97822 0.96691 1.17716 0.79176 0.85432 0.82996 1.90749 1.43505 1.19051 1.86859 1.45963 1.63097 1.21004 1.05992 1.21430 1.01689 0.95574 0.79588 1.22634 0.90107 0.86516 0.97384 1.22203 0.96351 1.02657 1.00679 1.21364 1.00845 0.92222 0.82138 1.43904 1.53239 1.13429 1.20913 1.19066 1.19849 0.94165 1.05655 0.91759 1.25305 0.98592 0.96994 0.97950 1.69880 1.42869 1.00590 1.41343 0.86330 0.80088 0.77124 0.82939 1.20788 1.21465 1.20873 1.21615 0.95772 0.89852 0.94476 1.23043 0.99711 0.90343 0.90134 1.87814 1.61205 1.28121 1.53358 0.93371 0.91542 0.91695 0.90268 0.86835 0.78296 0.81183 0.76438 0.90437 0.89572 0.94244 0.90765 0.91734 0.95329 0.88059 0.93226 0.95629 0.92049 0.90200 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.52 37.16 0.35 -1.07 16 2 C -0.08 -0.93 5.49 -27.88 -0.15 -1.08 16 3 C 0.24 2.82 6.12 -81.82 -0.50 2.32 16 4 N -0.52 -5.88 10.36 -10.48 -0.11 -5.99 16 5 C 0.31 3.02 12.27 -92.03 -1.13 1.89 16 6 N -0.53 -5.58 10.42 -14.24 -0.15 -5.73 16 7 C 0.18 1.91 10.80 -16.77 -0.18 1.73 16 8 C -0.24 -2.82 5.91 -104.69 -0.62 -3.44 16 9 C 0.56 7.57 7.73 -12.34 -0.10 7.47 16 10 O -0.52 -8.19 12.04 5.32 0.06 -8.12 16 11 N -0.71 -9.26 5.15 -61.26 -0.32 -9.57 16 12 C 0.14 2.21 4.85 -4.05 -0.02 2.19 16 13 C 0.07 1.30 0.78 -90.47 -0.07 1.23 16 14 C -0.16 -2.58 7.87 37.16 0.29 -2.29 16 15 C 0.16 3.59 4.03 -3.53 -0.01 3.57 16 16 N -0.59 -13.92 2.56 -171.83 -0.44 -14.36 16 17 C -0.26 -6.66 9.62 -15.06 -0.14 -6.81 16 18 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 19 C 0.01 0.29 5.26 -17.43 -0.09 0.20 16 20 N -0.90 -24.89 10.81 55.49 0.60 -24.29 16 21 Si 0.91 20.79 29.55 -169.99 -5.02 15.76 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.11 2.17 6.74 -3.53 -0.02 2.15 16 26 C 0.05 0.75 6.60 37.31 0.25 1.00 16 27 O -0.39 -6.72 10.18 -35.23 -0.36 -7.08 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.81 6.92 -51.93 -0.36 0.45 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.11 1.40 5.92 -51.93 -0.31 1.10 16 33 H 0.20 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.17 1.37 6.57 -52.49 -0.34 1.02 16 35 H 0.40 4.52 5.16 -40.82 -0.21 4.31 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.04 0.51 6.58 -51.93 -0.34 0.17 16 39 H 0.07 1.32 6.12 -51.93 -0.32 1.00 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 42 H 0.10 2.51 6.20 -51.93 -0.32 2.19 16 43 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.05 0.76 6.26 -51.93 -0.32 0.43 16 LS Contribution 371.12 15.07 5.59 5.59 Total: -1.00 -29.91 371.12 -9.00 -38.91 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.72 Total: 5.82 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -2.15 Total: 9.07 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.41 Total: -59.94 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.29 Total: -15.20 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.91 -9.00 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108403050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.860 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds