Wall clock time and date at job start Tue Mar 31 2020 17:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47251 * 2 1 4 4 N 1.32153 * 120.54108 * 263.92887 * 3 2 1 5 5 C 1.31850 * 120.97291 * 180.02562 * 4 3 2 6 6 N 1.31883 * 122.09374 * 359.73246 * 5 4 3 7 7 C 1.32134 * 120.96322 * 0.53099 * 6 5 4 8 8 C 1.39933 * 120.53389 * 83.94300 * 3 2 1 9 9 C 1.47831 * 120.94103 * 359.96305 * 8 3 2 10 10 O 1.21555 * 120.00113 * 354.65773 * 9 8 3 11 11 N 1.34776 * 120.00158 * 174.66459 * 9 8 3 12 12 C 1.46495 * 120.00126 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47051 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.51702 * 305.00244 * 13 12 11 15 15 C 1.53292 * 109.51307 * 184.89951 * 13 12 11 16 16 N 1.47158 * 108.38546 * 187.77565 * 15 13 12 17 17 C 1.36939 * 120.98210 * 230.50903 * 16 15 13 18 18 H 1.07993 * 119.99674 * 145.95407 * 17 16 15 19 19 C 1.38815 * 120.00107 * 325.95808 * 17 16 15 20 20 N 1.31622 * 119.99777 * 359.62731 * 19 17 16 21 21 Si 1.86797 * 120.00010 * 179.62956 * 19 17 16 22 22 H 1.48500 * 109.46898 * 59.99649 * 21 19 17 23 23 H 1.48498 * 109.47125 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46781 * 300.00239 * 21 19 17 25 25 C 1.47149 * 118.03562 * 50.53794 * 16 15 13 26 26 C 1.53299 * 108.38341 * 309.46280 * 25 16 15 27 27 O 1.42956 * 109.26528 * 52.27965 * 26 25 16 28 28 H 1.08996 * 109.47460 * 59.99144 * 1 2 3 29 29 H 1.08999 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46579 * 299.99383 * 1 2 3 31 31 H 1.09000 * 109.46579 * 240.00617 * 2 1 3 32 32 H 1.08996 * 109.47460 * 120.00856 * 2 1 3 33 33 H 1.08005 * 118.95706 * 179.97438 * 5 4 3 34 34 H 1.08002 * 120.53883 * 179.76437 * 7 6 5 35 35 H 0.97006 * 119.99868 * 359.97438 * 11 9 8 36 36 H 1.08998 * 109.47168 * 299.99915 * 12 11 9 37 37 H 1.08997 * 109.46970 * 59.99834 * 12 11 9 38 38 H 1.08997 * 109.47120 * 59.99792 * 14 13 12 39 39 H 1.08993 * 109.47297 * 179.97438 * 14 13 12 40 40 H 1.09002 * 109.46485 * 300.00003 * 14 13 12 41 41 H 1.09008 * 109.68288 * 307.49506 * 15 13 12 42 42 H 1.08994 * 109.68456 * 68.01254 * 15 13 12 43 43 H 0.97005 * 119.99575 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.68589 * 69.18293 * 25 16 15 45 45 H 1.08992 * 109.68290 * 189.74392 * 25 16 15 46 46 H 1.08998 * 109.51334 * 172.22437 * 26 25 16 47 47 H 1.09001 * 109.51095 * 292.33332 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3698 2.0138 -1.1318 5 6 2.8107 3.2563 -1.1416 6 7 2.9318 3.9656 -0.0364 7 6 2.6221 3.4496 1.1399 8 6 2.1495 2.1334 1.1986 9 6 1.7842 1.5138 2.4901 10 8 1.2846 0.4059 2.5129 11 7 2.0049 2.1774 3.6422 12 6 1.6424 1.5636 4.9220 13 6 1.9956 2.5186 6.0639 14 6 3.4733 2.9038 5.9695 15 6 1.7308 1.8302 7.4077 16 7 1.8974 2.8247 8.4795 17 6 2.6911 2.5652 9.5648 18 1 3.2481 3.3650 10.0300 19 6 2.7797 1.2741 10.0670 20 7 2.0951 0.3008 9.5045 21 14 3.8704 0.9182 11.5411 22 1 3.4128 1.7240 12.7015 23 1 3.7902 -0.5256 11.8791 24 1 5.2749 1.2735 11.2149 25 6 1.1854 4.1061 8.3508 26 6 1.4768 4.6837 6.9610 27 8 1.1887 3.6950 5.9695 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.0777 3.7090 -2.0852 34 1 2.7275 4.0354 2.0411 35 1 2.4038 3.0614 3.6240 36 1 0.5718 1.3594 4.9367 37 1 2.1919 0.6305 5.0461 38 1 3.6606 3.3948 5.0146 39 1 3.7241 3.5845 6.7830 40 1 4.0880 2.0066 6.0434 41 1 0.7137 1.4384 7.4254 42 1 2.4406 1.0152 7.5489 43 1 2.1573 -0.6015 9.8553 44 1 0.1135 3.9434 8.4633 45 1 1.5345 4.7986 9.1167 46 1 0.8519 5.5608 6.7929 47 1 2.5273 4.9674 6.8977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108403050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:57 Heat of formation + Delta-G solvation = -23.957010 kcal Electronic energy + Delta-G solvation = -29655.596238 eV Core-core repulsion = 25645.822312 eV Total energy + Delta-G solvation = -4009.773926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.44963 -40.95892 -40.02399 -36.81353 -36.21565 -35.62253 -34.18377 -33.24660 -33.14618 -31.80935 -29.54770 -28.14117 -27.59574 -26.04011 -25.92048 -24.92574 -23.15096 -22.80691 -21.93956 -20.34374 -19.14165 -19.01978 -18.65186 -17.89238 -17.40093 -16.90804 -16.65342 -16.48943 -16.14107 -15.73367 -15.53626 -15.48594 -15.22497 -15.11190 -14.91840 -14.74743 -14.51788 -14.18988 -13.93246 -13.53242 -13.41614 -13.17268 -12.92819 -12.77666 -12.73239 -12.55250 -12.52950 -12.40583 -12.14006 -12.04082 -11.94469 -11.86449 -11.70322 -11.13277 -10.85010 -10.78783 -10.63195 -10.52038 -10.39548 -10.11165 -8.58412 -7.88181 -5.45024 -0.65944 -0.11516 1.47349 1.48571 1.55198 1.73742 1.94558 2.47627 2.67346 2.81327 2.91197 3.03394 3.24587 3.28181 3.51677 3.58431 3.73126 3.96867 4.04422 4.13490 4.22157 4.26185 4.39397 4.45058 4.48206 4.48617 4.59881 4.66483 4.74207 4.74704 4.81580 4.98394 5.01336 5.07509 5.11327 5.15213 5.22832 5.24307 5.26738 5.39452 5.41076 5.61090 5.64276 5.78362 6.34627 6.39287 6.42319 6.90182 7.06973 7.11833 7.76816 8.33793 9.15648 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019015 B = 0.002803 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.164090 B = 9988.615944 C =10605.159560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C 0.230 3.770 4 N -0.535 5.535 5 C 0.317 3.683 6 N -0.535 5.535 7 C 0.193 3.807 8 C -0.252 4.252 9 C 0.564 3.436 10 O -0.550 6.550 11 N -0.699 5.699 12 C 0.152 3.848 13 C 0.090 3.910 14 C -0.153 4.153 15 C 0.169 3.831 16 N -0.609 5.609 17 C -0.263 4.263 18 H 0.070 0.930 19 C -0.043 4.043 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.274 1.274 25 C 0.102 3.898 26 C 0.052 3.948 27 O -0.386 6.386 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.236 0.764 34 H 0.195 0.805 35 H 0.411 0.589 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.056 0.944 41 H -0.008 1.008 42 H 0.071 0.929 43 H 0.251 0.749 44 H 0.012 0.988 45 H 0.070 0.930 46 H 0.116 0.884 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.922 7.314 -19.312 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 C 0.083 3.917 4 N -0.249 5.249 5 C 0.031 3.969 6 N -0.249 5.249 7 C 0.026 3.974 8 C -0.260 4.260 9 C 0.351 3.649 10 O -0.429 6.429 11 N -0.351 5.351 12 C 0.028 3.972 13 C 0.049 3.951 14 C -0.211 4.211 15 C 0.042 3.958 16 N -0.333 5.333 17 C -0.393 4.393 18 H 0.087 0.913 19 C -0.239 4.239 20 N -0.579 5.579 21 Si 0.795 3.205 22 H -0.203 1.203 23 H -0.223 1.223 24 H -0.199 1.199 25 C -0.023 4.023 26 C -0.025 4.025 27 O -0.305 6.305 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.252 0.748 34 H 0.211 0.789 35 H 0.249 0.751 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.010 0.990 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.030 0.970 45 H 0.088 0.912 46 H 0.134 0.866 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.673 6.831 -20.223 21.411 hybrid contribution 0.345 -0.565 2.286 2.380 sum 2.018 6.265 -17.937 19.107 Atomic orbital electron populations 1.21502 0.92928 1.03013 1.00996 1.20808 0.97594 0.88888 1.04698 1.22167 0.85761 0.96925 0.86823 1.68477 1.14362 1.12960 1.29149 1.25984 0.86762 0.85824 0.98298 1.68570 1.18499 1.38476 0.99350 1.23866 0.85646 0.90326 0.97563 1.21523 1.10213 0.98709 0.95521 1.17951 0.78435 0.85033 0.83496 1.90748 1.44604 1.20312 1.87259 1.45715 1.63196 1.21377 1.04856 1.21073 1.00623 0.95026 0.80492 1.22267 0.91445 0.86430 0.94979 1.22111 0.94508 1.02298 1.02159 1.21095 0.97785 0.92007 0.84886 1.44149 1.53536 1.14669 1.20944 1.19399 1.19711 0.94231 1.05943 0.91263 1.26023 1.00331 0.97060 1.00450 1.70075 1.44725 1.00531 1.42599 0.85351 0.78851 0.76286 0.79973 1.20350 1.22262 1.19922 1.21815 0.94570 0.88530 0.97382 1.23101 1.01378 0.90630 0.87405 1.87828 1.61388 1.27941 1.53355 0.92636 0.90644 0.93798 0.89014 0.88412 0.74803 0.78881 0.75097 0.92007 0.90392 0.90456 0.92163 0.92489 0.99005 0.91031 0.93971 0.97021 0.91152 0.86595 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.52 71.98 0.68 -1.99 16 2 C -0.08 -1.79 5.49 29.85 0.16 -1.62 16 3 C 0.23 5.17 6.12 42.92 0.26 5.43 16 4 N -0.54 -10.89 10.36 -187.07 -1.94 -12.82 16 5 C 0.32 5.18 12.27 180.84 2.22 7.40 16 6 N -0.54 -9.70 10.42 -198.97 -2.07 -11.77 16 7 C 0.19 3.48 10.80 85.07 0.92 4.40 16 8 C -0.25 -5.59 5.91 -19.91 -0.12 -5.70 16 9 C 0.56 14.86 7.73 86.78 0.67 15.53 16 10 O -0.55 -17.47 12.04 -3.89 -0.05 -17.52 16 11 N -0.70 -17.38 5.15 -466.01 -2.40 -19.78 16 12 C 0.15 4.83 4.85 86.38 0.42 5.25 16 13 C 0.09 3.11 0.78 -10.70 -0.01 3.10 16 14 C -0.15 -4.65 7.87 71.98 0.57 -4.09 16 15 C 0.17 7.82 4.03 86.35 0.35 8.17 16 16 N -0.61 -29.05 2.56 -697.54 -1.79 -30.84 16 17 C -0.26 -13.70 9.62 84.03 0.81 -12.89 16 18 H 0.07 3.47 7.83 -2.91 -0.02 3.45 16 19 C -0.04 -2.29 5.26 84.86 0.45 -1.85 16 20 N -0.93 -53.50 10.81 21.65 0.23 -53.26 16 21 Si 0.97 43.27 29.55 68.60 2.03 45.30 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 C 0.10 4.00 6.74 86.36 0.58 4.58 16 26 C 0.05 1.58 6.60 72.08 0.48 2.06 16 27 O -0.39 -12.76 10.18 -148.98 -1.52 -14.28 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.11 6.92 -2.39 -0.02 1.09 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.10 2.46 5.92 -2.39 -0.01 2.44 16 33 H 0.24 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.19 2.40 6.57 -2.91 -0.02 2.38 16 35 H 0.41 8.16 5.16 -92.70 -0.48 7.68 16 36 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.08 1.75 6.58 -2.39 -0.02 1.73 16 39 H 0.06 2.02 6.12 -2.39 -0.01 2.01 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 42 H 0.07 3.73 6.20 -2.39 -0.01 3.72 16 43 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 44 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.07 2.58 7.96 -2.39 -0.02 2.56 16 46 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.06 1.72 6.26 -2.39 -0.01 1.71 16 Total: -1.00 -66.54 371.12 1.46 -65.07 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.52 Total: 22.13 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: 8.44 Total: 27.76 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -7.96 Total: -128.47 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.56 Total: -31.79 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -66.54 1.46 -65.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108403050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.117 kcal (2) G-P(sol) polarization free energy of solvation -66.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds