Wall clock time and date at job start Tue Mar 31 2020 19:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47436 * 2 1 4 4 N 1.29948 * 126.28905 * 89.97500 * 3 2 1 5 5 O 1.21292 * 110.25198 * 180.02562 * 4 3 2 6 6 C 1.33640 * 109.81616 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.55429 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47210 * 270.02708 * 7 6 5 9 9 C 1.53001 * 109.47353 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47329 * 179.97438 * 9 8 7 11 11 O 1.21286 * 120.00161 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00046 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99942 * 180.02562 * 12 10 9 14 14 H 1.09001 * 115.49715 * 350.38829 * 13 12 10 15 15 C 1.53003 * 117.44409 * 205.00138 * 13 12 10 16 16 H 1.08995 * 119.53988 * 5.72132 * 15 13 12 17 17 C 1.54389 * 118.12264 * 160.81259 * 15 13 12 18 18 N 1.48141 * 104.61972 * 89.21099 * 17 15 13 19 19 C 1.36937 * 127.83847 * 140.41544 * 18 17 15 20 20 H 1.07999 * 120.00246 * 338.92854 * 19 18 17 21 21 C 1.38815 * 119.99944 * 158.93083 * 19 18 17 22 22 N 1.31623 * 119.99729 * 335.61437 * 21 19 18 23 23 Si 1.86801 * 119.99974 * 155.61203 * 21 19 18 24 24 H 1.48501 * 109.46843 * 90.00213 * 23 21 19 25 25 H 1.48498 * 109.47072 * 330.00315 * 23 21 19 26 26 H 1.48498 * 109.47087 * 209.99922 * 23 21 19 27 27 C 1.48145 * 104.32122 * 320.67503 * 18 17 15 28 28 C 1.53987 * 104.81847 * 39.27719 * 27 18 17 29 29 H 1.08998 * 118.03460 * 115.98808 * 28 27 18 30 30 N 1.31131 * 106.89328 * 0.22961 * 6 5 4 31 31 H 1.08997 * 109.47090 * 59.99997 * 1 2 3 32 32 H 1.09003 * 109.47186 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46983 * 300.00088 * 1 2 3 34 34 H 1.09001 * 109.46761 * 240.00310 * 2 1 3 35 35 H 1.08999 * 109.46936 * 120.00526 * 2 1 3 36 36 H 1.08995 * 109.47028 * 150.02359 * 7 6 5 37 37 H 1.09002 * 109.47193 * 30.02727 * 7 6 5 38 38 H 1.08995 * 109.47410 * 59.99885 * 8 7 6 39 39 H 1.09002 * 109.47058 * 300.00101 * 8 7 6 40 40 H 1.09001 * 109.47162 * 59.99971 * 9 8 7 41 41 H 1.09002 * 109.47173 * 300.00094 * 9 8 7 42 42 H 0.97003 * 120.00208 * 0.02562 * 12 10 9 43 43 H 1.09000 * 110.40621 * 330.42534 * 17 15 13 44 44 H 1.09005 * 110.40761 * 207.99531 * 17 15 13 45 45 H 0.96998 * 120.00528 * 354.47340 * 22 21 19 46 46 H 1.09003 * 110.40893 * 158.10934 * 27 18 17 47 47 H 1.09003 * 110.41009 * 280.54046 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2884 2.1460 1.0474 5 8 2.6767 3.2451 0.7124 6 6 2.7067 3.3279 -0.6211 7 6 3.1285 4.5227 -1.4369 8 6 1.9110 5.4071 -1.7134 9 6 2.3393 6.6205 -2.5411 10 6 1.1400 7.4912 -2.8139 11 8 0.0500 7.1729 -2.3878 12 7 1.2788 8.6242 -3.5305 13 6 0.1130 9.4709 -3.7952 14 1 -0.8509 9.0404 -3.5238 15 6 0.1606 10.3697 -5.0325 16 1 1.0002 10.2895 -5.7229 17 6 -1.1729 10.9150 -5.5875 18 7 -1.3846 12.1910 -4.8653 19 6 -1.8743 13.3680 -5.3652 20 1 -1.8397 13.5595 -6.4275 21 6 -2.4154 14.3151 -4.5066 22 7 -2.9010 13.9450 -3.3405 23 14 -2.4541 16.1147 -5.0060 24 1 -3.7227 16.4023 -5.7224 25 1 -1.3041 16.4053 -5.8995 26 1 -2.3664 16.9670 -3.7931 27 6 -0.9402 11.9065 -3.4809 28 6 0.3100 11.0222 -3.6425 29 1 1.2642 11.4152 -3.2917 30 7 2.2938 2.1726 -1.0841 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.5547 4.1854 -2.3817 37 1 3.8749 5.0942 -0.8852 38 1 1.4849 5.7444 -0.7686 39 1 1.1646 4.8356 -2.2651 40 1 2.7657 6.2836 -3.4860 41 1 3.0856 7.1919 -1.9890 42 1 2.1507 8.8790 -3.8710 43 1 -1.9852 10.2195 -5.3765 44 1 -1.0934 11.0939 -6.6599 45 1 -2.9545 13.0034 -3.1141 46 1 -0.6854 12.8327 -2.9657 47 1 -1.7156 11.3683 -2.9358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115242153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:54 Heat of formation + Delta-G solvation = 72.352494 kcal Electronic energy + Delta-G solvation = -27105.010501 eV Core-core repulsion = 23099.412869 eV Total energy + Delta-G solvation = -4005.597632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.93903 -39.97915 -38.50192 -36.77044 -35.95149 -34.66175 -33.60557 -32.83649 -31.77210 -30.21243 -28.62632 -27.43746 -25.50468 -25.44487 -24.09429 -23.00984 -21.73091 -21.19520 -20.62368 -20.10447 -19.40804 -18.43066 -17.84012 -17.47734 -17.09737 -16.44967 -16.21838 -15.65837 -15.13206 -14.59107 -14.46078 -14.19828 -13.99658 -13.78551 -13.58353 -13.45815 -13.18055 -13.17104 -12.89425 -12.43945 -12.37041 -12.21845 -12.05098 -11.88603 -11.73969 -11.64735 -11.54403 -11.34651 -11.21759 -10.83583 -10.69856 -10.58979 -10.28898 -10.25130 -10.06985 -9.95250 -9.67425 -9.30263 -8.58350 -8.39502 -7.01729 -6.15686 -3.21599 0.78011 1.84897 2.40889 2.50577 2.98759 3.22952 3.48148 3.52411 3.63873 3.67653 4.07647 4.28241 4.34538 4.45280 4.54181 4.61075 4.68450 4.72184 4.81193 4.93017 4.93981 4.99930 5.08501 5.18508 5.19263 5.27709 5.30338 5.39250 5.40299 5.46863 5.58292 5.66168 5.68789 5.71902 5.74745 5.83001 5.92521 6.07955 6.35782 6.55827 6.63381 6.72254 6.94915 6.97335 7.44903 7.71634 7.81678 8.16305 8.42152 8.94659 9.75626 10.38194 11.20421 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028736 B = 0.001557 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.137584 B =17976.010095 C =18190.115019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.032 4.032 3 C 0.171 3.829 4 N -0.385 5.385 5 O 0.078 5.922 6 C 0.187 3.813 7 C -0.028 4.028 8 C -0.103 4.103 9 C -0.137 4.137 10 C 0.513 3.487 11 O -0.537 6.537 12 N -0.698 5.698 13 C 0.095 3.905 14 H 0.134 0.866 15 C -0.175 4.175 16 H 0.104 0.896 17 C 0.154 3.846 18 N -0.596 5.596 19 C -0.333 4.333 20 H 0.065 0.935 21 C -0.025 4.025 22 N -0.917 5.917 23 Si 1.072 2.928 24 H -0.293 1.293 25 H -0.292 1.292 26 H -0.285 1.285 27 C 0.165 3.835 28 C -0.178 4.178 29 H 0.106 0.894 30 N -0.480 5.480 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.400 0.600 43 H 0.026 0.974 44 H 0.054 0.946 45 H 0.269 0.731 46 H 0.068 0.932 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.521 -24.202 3.920 29.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.071 4.071 3 C -0.102 4.102 4 N -0.093 5.093 5 O 0.019 5.981 6 C -0.033 4.033 7 C -0.067 4.067 8 C -0.142 4.142 9 C -0.178 4.178 10 C 0.300 3.700 11 O -0.414 6.414 12 N -0.347 5.347 13 C -0.011 4.011 14 H 0.151 0.849 15 C -0.196 4.196 16 H 0.122 0.878 17 C 0.027 3.973 18 N -0.321 5.321 19 C -0.460 4.460 20 H 0.083 0.917 21 C -0.227 4.227 22 N -0.557 5.557 23 Si 0.901 3.099 24 H -0.221 1.221 25 H -0.219 1.219 26 H -0.211 1.211 27 C 0.039 3.961 28 C -0.199 4.199 29 H 0.124 0.876 30 N -0.214 5.214 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.234 0.766 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 15.057 -23.357 5.194 28.271 hybrid contribution 1.051 -1.240 -0.860 1.839 sum 16.109 -24.597 4.334 29.720 Atomic orbital electron populations 1.21747 0.93120 1.02922 1.02898 1.19941 0.96971 0.85596 1.04622 1.25919 1.00307 1.00515 0.83495 1.74639 1.17901 0.92840 1.23940 1.85296 1.60742 1.27191 1.24829 1.28789 0.95579 0.96740 0.82212 1.20319 0.99533 0.88522 0.98335 1.21337 0.96225 0.94706 1.01961 1.21611 0.97121 0.96473 1.02550 1.20561 0.90660 0.81079 0.77726 1.90741 1.27968 1.71957 1.50692 1.45371 1.11273 1.23288 1.54724 1.22505 0.90188 0.87003 1.01441 0.84875 1.24321 1.01780 1.02173 0.91307 0.87848 1.21134 0.91448 0.88592 0.96086 1.45257 1.73622 1.07246 1.05977 1.19740 1.38626 0.93281 0.94383 0.91726 1.25896 0.95589 1.05097 0.96135 1.70733 1.40956 1.19613 1.24397 0.83445 0.75866 0.75274 0.75312 1.22065 1.21872 1.21086 1.21024 0.90446 0.96166 0.88441 1.25062 1.01824 0.92033 1.01002 0.87561 1.71898 1.17965 1.02147 1.29410 0.91837 0.90944 0.92258 0.88585 0.89114 0.86949 0.87642 0.90075 0.89959 0.88291 0.88213 0.76647 0.95624 0.92778 0.91941 0.91384 0.95403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.16 0.37 -0.58 16 2 C -0.03 -0.22 6.56 -27.89 -0.18 -0.40 16 3 C 0.17 1.72 7.47 -156.37 -1.17 0.55 16 4 N -0.39 -4.34 12.16 30.89 0.38 -3.96 16 5 O 0.08 0.79 11.31 18.11 0.20 1.00 16 6 C 0.19 1.62 7.77 -13.06 -0.10 1.52 16 7 C -0.03 -0.14 5.84 -27.89 -0.16 -0.30 16 8 C -0.10 -0.74 4.49 -26.73 -0.12 -0.86 16 9 C -0.14 -0.84 5.70 -27.88 -0.16 -1.00 16 10 C 0.51 6.01 7.83 -10.99 -0.09 5.92 16 11 O -0.54 -8.90 15.55 5.55 0.09 -8.81 16 12 N -0.70 -8.05 5.57 -51.65 -0.29 -8.34 16 13 C 0.09 1.49 6.20 -65.69 -0.41 1.09 16 14 H 0.13 2.43 7.40 -51.93 -0.38 2.05 16 15 C -0.17 -2.94 6.91 -89.22 -0.62 -3.56 16 16 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 17 C 0.15 3.22 7.04 -2.41 -0.02 3.20 16 18 N -0.60 -15.21 3.23 -169.11 -0.55 -15.76 16 19 C -0.33 -9.41 10.19 -15.06 -0.15 -9.56 16 20 H 0.06 1.81 7.94 -52.49 -0.42 1.39 16 21 C -0.03 -0.72 5.12 -17.43 -0.09 -0.81 16 22 N -0.92 -27.84 12.82 55.49 0.71 -27.13 16 23 Si 1.07 25.23 29.98 -169.99 -5.10 20.13 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.17 3.85 5.01 -2.62 -0.01 3.84 16 28 C -0.18 -3.19 7.22 -87.20 -0.63 -3.82 16 29 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 30 N -0.48 -4.96 11.55 -9.87 -0.11 -5.08 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.08 0.76 8.10 -51.93 -0.42 0.33 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.40 3.28 8.83 -40.82 -0.36 2.92 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.27 8.25 6.41 -40.82 -0.26 7.99 16 46 H 0.07 1.74 7.47 -51.93 -0.39 1.35 16 47 H 0.03 0.68 7.67 -51.93 -0.40 0.29 16 LS Contribution 394.46 15.07 5.94 5.94 Total: -1.00 -36.34 394.46 -9.60 -45.94 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.34 Total: 0.81 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -3.54 Total: -4.76 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.14 Total: -60.26 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.29 Total: -7.81 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.10 Total: 20.13 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.34 -9.60 -45.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115242153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.295 kcal (2) G-P(sol) polarization free energy of solvation -36.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds