Wall clock time and date at job start Tue Mar 31 2020 19:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47436 * 2 1 4 4 N 1.29948 * 126.28905 * 89.97500 * 3 2 1 5 5 O 1.21292 * 110.25198 * 180.02562 * 4 3 2 6 6 C 1.33640 * 109.81616 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.55429 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47210 * 270.02708 * 7 6 5 9 9 C 1.53001 * 109.47353 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47329 * 179.97438 * 9 8 7 11 11 O 1.21286 * 120.00161 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00046 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99942 * 180.02562 * 12 10 9 14 14 H 1.09001 * 115.49715 * 350.38829 * 13 12 10 15 15 C 1.53003 * 117.44409 * 205.00138 * 13 12 10 16 16 H 1.08995 * 119.53988 * 5.72132 * 15 13 12 17 17 C 1.54389 * 118.12264 * 160.81259 * 15 13 12 18 18 N 1.48141 * 104.61972 * 89.21099 * 17 15 13 19 19 C 1.36937 * 127.83847 * 140.41544 * 18 17 15 20 20 H 1.07999 * 120.00246 * 338.92854 * 19 18 17 21 21 C 1.38815 * 119.99944 * 158.93083 * 19 18 17 22 22 N 1.31623 * 119.99729 * 335.61437 * 21 19 18 23 23 Si 1.86801 * 119.99974 * 155.61203 * 21 19 18 24 24 H 1.48501 * 109.46843 * 90.00213 * 23 21 19 25 25 H 1.48498 * 109.47072 * 330.00315 * 23 21 19 26 26 H 1.48498 * 109.47087 * 209.99922 * 23 21 19 27 27 C 1.48145 * 104.32122 * 320.67503 * 18 17 15 28 28 C 1.53987 * 104.81847 * 39.27719 * 27 18 17 29 29 H 1.08998 * 118.03460 * 115.98808 * 28 27 18 30 30 N 1.31131 * 106.89328 * 0.22961 * 6 5 4 31 31 H 1.08997 * 109.47090 * 59.99997 * 1 2 3 32 32 H 1.09003 * 109.47186 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46983 * 300.00088 * 1 2 3 34 34 H 1.09001 * 109.46761 * 240.00310 * 2 1 3 35 35 H 1.08999 * 109.46936 * 120.00526 * 2 1 3 36 36 H 1.08995 * 109.47028 * 150.02359 * 7 6 5 37 37 H 1.09002 * 109.47193 * 30.02727 * 7 6 5 38 38 H 1.08995 * 109.47410 * 59.99885 * 8 7 6 39 39 H 1.09002 * 109.47058 * 300.00101 * 8 7 6 40 40 H 1.09001 * 109.47162 * 59.99971 * 9 8 7 41 41 H 1.09002 * 109.47173 * 300.00094 * 9 8 7 42 42 H 0.97003 * 120.00208 * 0.02562 * 12 10 9 43 43 H 1.09000 * 110.40621 * 330.42534 * 17 15 13 44 44 H 1.09005 * 110.40761 * 207.99531 * 17 15 13 45 45 H 0.96998 * 120.00528 * 354.47340 * 22 21 19 46 46 H 1.09003 * 110.40893 * 158.10934 * 27 18 17 47 47 H 1.09003 * 110.41009 * 280.54046 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2884 2.1460 1.0474 5 8 2.6767 3.2451 0.7124 6 6 2.7067 3.3279 -0.6211 7 6 3.1285 4.5227 -1.4369 8 6 1.9110 5.4071 -1.7134 9 6 2.3393 6.6205 -2.5411 10 6 1.1400 7.4912 -2.8139 11 8 0.0500 7.1729 -2.3878 12 7 1.2788 8.6242 -3.5305 13 6 0.1130 9.4709 -3.7952 14 1 -0.8509 9.0404 -3.5238 15 6 0.1606 10.3697 -5.0325 16 1 1.0002 10.2895 -5.7229 17 6 -1.1729 10.9150 -5.5875 18 7 -1.3846 12.1910 -4.8653 19 6 -1.8743 13.3680 -5.3652 20 1 -1.8397 13.5595 -6.4275 21 6 -2.4154 14.3151 -4.5066 22 7 -2.9010 13.9450 -3.3405 23 14 -2.4541 16.1147 -5.0060 24 1 -3.7227 16.4023 -5.7224 25 1 -1.3041 16.4053 -5.8995 26 1 -2.3664 16.9670 -3.7931 27 6 -0.9402 11.9065 -3.4809 28 6 0.3100 11.0222 -3.6425 29 1 1.2642 11.4152 -3.2917 30 7 2.2938 2.1726 -1.0841 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.5547 4.1854 -2.3817 37 1 3.8749 5.0942 -0.8852 38 1 1.4849 5.7444 -0.7686 39 1 1.1646 4.8356 -2.2651 40 1 2.7657 6.2836 -3.4860 41 1 3.0856 7.1919 -1.9890 42 1 2.1507 8.8790 -3.8710 43 1 -1.9852 10.2195 -5.3765 44 1 -1.0934 11.0939 -6.6599 45 1 -2.9545 13.0034 -3.1141 46 1 -0.6854 12.8327 -2.9657 47 1 -1.7156 11.3683 -2.9358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115242153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:53 Heat of formation + Delta-G solvation = 45.937290 kcal Electronic energy + Delta-G solvation = -27106.155951 eV Core-core repulsion = 23099.412869 eV Total energy + Delta-G solvation = -4006.743082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.65671 -41.11765 -39.91849 -37.44665 -36.60613 -36.18159 -34.48961 -34.16078 -32.50363 -31.90418 -29.38610 -29.13689 -27.31174 -26.12668 -24.95383 -23.89393 -23.05594 -21.99838 -21.79869 -21.25381 -20.93380 -19.53324 -19.16754 -18.57390 -17.99556 -17.68044 -16.84680 -16.41862 -16.08553 -15.82422 -15.68716 -15.39097 -15.19430 -15.15760 -14.99411 -14.64094 -14.05454 -13.90943 -13.82134 -13.64634 -13.55753 -13.25071 -12.87090 -12.73449 -12.60914 -12.59262 -12.53063 -12.33787 -12.30633 -12.26409 -11.99806 -11.89889 -11.80302 -11.70905 -11.65045 -11.06573 -10.95320 -10.80805 -10.61982 -9.69004 -9.11533 -8.40344 -5.42810 0.09921 1.14488 1.56870 1.57412 1.66533 1.80019 1.84014 2.02996 2.61716 2.63898 2.70689 3.02011 3.17479 3.42829 3.62054 3.68762 3.76887 3.82791 4.01001 4.02088 4.07563 4.15987 4.18431 4.23129 4.27765 4.32317 4.49560 4.58569 4.66399 4.70209 4.74402 4.79759 4.83610 4.84776 4.88673 4.94733 4.98168 4.99462 5.13898 5.17778 5.19070 5.22157 5.29245 5.50071 5.61005 6.23258 6.56960 6.77734 7.12120 7.28931 7.61905 8.29039 8.95476 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028736 B = 0.001557 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.137584 B =17976.010095 C =18190.115019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 C 0.163 3.837 4 N -0.413 5.413 5 O 0.066 5.934 6 C 0.191 3.809 7 C -0.020 4.020 8 C -0.100 4.100 9 C -0.122 4.122 10 C 0.507 3.493 11 O -0.594 6.594 12 N -0.682 5.682 13 C 0.118 3.882 14 H 0.103 0.897 15 C -0.152 4.152 16 H 0.143 0.857 17 C 0.144 3.856 18 N -0.622 5.622 19 C -0.341 4.341 20 H 0.065 0.935 21 C -0.081 4.081 22 N -0.948 5.948 23 Si 1.126 2.874 24 H -0.281 1.281 25 H -0.270 1.270 26 H -0.290 1.290 27 C 0.169 3.831 28 C -0.182 4.182 29 H 0.133 0.867 30 N -0.505 5.505 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.423 0.577 43 H 0.014 0.986 44 H 0.062 0.938 45 H 0.252 0.748 46 H 0.036 0.964 47 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.087 -24.926 2.401 32.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.110 4.110 4 N -0.123 5.123 5 O 0.010 5.990 6 C -0.029 4.029 7 C -0.058 4.058 8 C -0.139 4.139 9 C -0.161 4.161 10 C 0.296 3.704 11 O -0.474 6.474 12 N -0.333 5.333 13 C 0.010 3.990 14 H 0.120 0.880 15 C -0.173 4.173 16 H 0.161 0.839 17 C 0.019 3.981 18 N -0.348 5.348 19 C -0.469 4.469 20 H 0.083 0.917 21 C -0.277 4.277 22 N -0.590 5.590 23 Si 0.949 3.051 24 H -0.208 1.208 25 H -0.195 1.195 26 H -0.216 1.216 27 C 0.043 3.957 28 C -0.204 4.204 29 H 0.151 0.849 30 N -0.239 5.239 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.261 0.739 43 H 0.032 0.968 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 18.691 -24.108 3.637 30.721 hybrid contribution -0.139 -1.114 -0.410 1.195 sum 18.552 -25.222 3.228 31.475 Atomic orbital electron populations 1.21719 0.92939 1.04044 1.01545 1.20129 0.97020 0.84203 1.05895 1.26527 0.99615 1.01578 0.83276 1.74620 1.19336 0.93493 1.24899 1.85252 1.61071 1.26975 1.25684 1.29613 0.94042 0.97359 0.81878 1.20554 0.98884 0.86986 0.99398 1.21228 0.96666 0.95352 1.00696 1.21668 0.94813 0.94910 1.04713 1.21693 0.91619 0.80939 0.76112 1.90739 1.30779 1.73167 1.52748 1.45201 1.10812 1.22577 1.54678 1.21978 0.90998 0.86052 0.99971 0.87960 1.24177 1.00310 1.01557 0.91273 0.83903 1.21290 0.93511 0.86853 0.96448 1.45565 1.73934 1.08187 1.07091 1.20076 1.37806 0.94424 0.94623 0.91678 1.27427 0.95211 1.09228 0.95794 1.70866 1.43811 1.18359 1.25963 0.82744 0.77040 0.70134 0.75204 1.20771 1.19545 1.21576 1.20814 0.92213 0.95530 0.87152 1.24807 1.00020 0.92946 1.02600 0.84917 1.71915 1.19076 1.03082 1.29829 0.93164 0.88578 0.93548 0.87208 0.87876 0.84411 0.84131 0.92390 0.92740 0.84439 0.84313 0.73919 0.96819 0.91938 0.93840 0.94586 0.98215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.03 -0.44 6.56 29.85 0.20 -0.24 16 3 C 0.16 3.26 7.47 138.46 1.03 4.30 16 4 N -0.41 -9.36 12.16 -60.34 -0.73 -10.09 16 5 O 0.07 1.32 11.31 74.87 0.85 2.17 16 6 C 0.19 3.07 7.77 88.38 0.69 3.76 16 7 C -0.02 -0.12 5.84 29.85 0.17 0.05 16 8 C -0.10 -1.21 4.49 30.59 0.14 -1.08 16 9 C -0.12 -0.95 5.70 29.85 0.17 -0.78 16 10 C 0.51 10.65 7.83 87.66 0.69 11.34 16 11 O -0.59 -19.77 15.55 -3.05 -0.05 -19.81 16 12 N -0.68 -13.44 5.57 -435.70 -2.43 -15.87 16 13 C 0.12 3.57 6.20 46.44 0.29 3.85 16 14 H 0.10 3.84 7.40 -2.39 -0.02 3.83 16 15 C -0.15 -4.79 6.91 -9.89 -0.07 -4.86 16 16 H 0.14 3.46 8.14 -2.39 -0.02 3.44 16 17 C 0.14 6.04 7.04 86.54 0.61 6.65 16 18 N -0.62 -32.53 3.23 -688.93 -2.22 -34.75 16 19 C -0.34 -19.63 10.19 84.03 0.86 -18.78 16 20 H 0.07 3.65 7.94 -2.91 -0.02 3.63 16 21 C -0.08 -4.75 5.12 84.86 0.43 -4.32 16 22 N -0.95 -59.96 12.82 21.65 0.28 -59.68 16 23 Si 1.13 51.29 29.98 68.60 2.06 53.35 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 27 C 0.17 8.21 5.01 86.40 0.43 8.64 16 28 C -0.18 -6.37 7.22 -8.58 -0.06 -6.43 16 29 H 0.13 3.96 8.14 -2.39 -0.02 3.94 16 30 N -0.51 -10.10 11.55 -303.22 -3.50 -13.60 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.14 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 39 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 40 H 0.14 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.42 4.68 8.83 -92.71 -0.82 3.86 16 43 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 45 H 0.25 16.38 6.41 -92.71 -0.59 15.79 16 46 H 0.04 1.93 7.47 -2.39 -0.02 1.92 16 47 H 0.00 0.00 7.67 -2.39 -0.02 -0.01 16 Total: -1.00 -86.78 394.46 0.87 -85.91 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.34 Total: 11.35 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 6.29 Total: 1.03 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -8.61 Total: -134.00 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.80 Total: -17.64 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.06 Total: 53.35 kcal Total: -86.78 0.87 -85.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115242153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.847 kcal (2) G-P(sol) polarization free energy of solvation -86.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds