Wall clock time and date at job start Tue Mar 31 2020 18:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47357 * 2 1 4 4 C 1.38165 * 120.49761 * 264.99840 * 3 2 1 5 5 N 1.31803 * 120.89339 * 179.70002 * 4 3 2 6 6 C 1.31831 * 122.04563 * 0.27781 * 5 4 3 7 7 C 1.38117 * 120.89952 * 0.02562 * 6 5 4 8 8 C 1.39798 * 120.49806 * 85.26484 * 3 2 1 9 9 C 1.48145 * 120.92484 * 0.04218 * 8 3 2 10 10 O 1.21510 * 120.00253 * 0.24764 * 9 8 3 11 11 N 1.34782 * 120.00033 * 180.24742 * 9 8 3 12 12 C 1.46504 * 119.99934 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46843 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47086 * 180.02562 * 13 12 11 15 15 N 1.46900 * 109.47578 * 180.02562 * 14 13 12 16 16 C 1.46893 * 111.00135 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46961 * 180.02562 * 16 15 14 18 18 O 1.21300 * 120.00162 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00277 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00624 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99487 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00365 * 179.97438 * 20 19 17 23 23 N 1.31406 * 119.99672 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99723 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46780 * 90.00284 * 24 22 20 26 26 H 1.48498 * 109.46717 * 210.00241 * 24 22 20 27 27 H 1.48497 * 109.47380 * 330.00101 * 24 22 20 28 28 H 1.09003 * 109.47155 * 60.00048 * 1 2 3 29 29 H 1.08992 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47471 * 300.00315 * 1 2 3 31 31 H 1.08996 * 109.47471 * 239.99685 * 2 1 3 32 32 H 1.08998 * 109.46733 * 119.99818 * 2 1 3 33 33 H 1.08002 * 119.55739 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.54374 * 179.97438 * 6 5 4 35 35 H 1.08005 * 120.49934 * 180.02562 * 7 6 5 36 36 H 0.96992 * 119.99690 * 359.97438 * 11 9 8 37 37 H 1.08993 * 109.47195 * 300.00223 * 12 11 9 38 38 H 1.08999 * 109.46628 * 60.00245 * 12 11 9 39 39 H 1.09001 * 109.47453 * 299.99929 * 13 12 11 40 40 H 1.09004 * 109.47125 * 60.00305 * 13 12 11 41 41 H 1.09006 * 109.47146 * 300.00409 * 14 13 12 42 42 H 1.08996 * 109.47187 * 59.99790 * 14 13 12 43 43 H 1.00901 * 110.99743 * 56.04305 * 15 14 13 44 44 H 1.08999 * 109.47795 * 300.00000 * 16 15 14 45 45 H 1.09004 * 109.46965 * 60.00648 * 16 15 14 46 46 H 0.97004 * 119.99901 * 359.97438 * 19 17 16 47 47 H 0.97004 * 119.99441 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3640 2.0473 -1.1860 5 7 2.7986 3.2916 -1.1956 6 6 2.9422 3.9909 -0.0873 7 6 2.6398 3.4406 1.1429 8 6 2.1752 2.1229 1.2005 9 6 1.8386 1.4903 2.4971 10 8 1.4363 0.3441 2.5276 11 7 1.9785 2.1861 3.6429 12 6 1.6451 1.5607 4.9251 13 6 1.8922 2.5582 6.0585 14 6 1.5446 1.9049 7.3976 15 7 1.7812 2.8627 8.4860 16 6 1.4569 2.2689 9.7898 17 6 1.7110 3.2789 10.8789 18 8 2.1214 4.3849 10.5968 19 7 1.4822 2.9534 12.1666 20 6 1.7138 3.8721 13.1576 21 1 2.0800 4.8565 12.9064 22 6 1.4774 3.5366 14.4851 23 7 1.0323 2.3386 14.7907 24 14 1.7937 4.7882 15.8353 25 1 0.5606 5.5800 16.0749 26 1 2.1793 4.0826 17.0837 27 1 2.8927 5.6967 15.4206 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 2.2616 1.5117 -2.1182 34 1 3.3020 5.0078 -0.1421 35 1 2.7595 4.0196 2.0467 36 1 2.3000 3.1009 3.6185 37 1 0.5961 1.2648 4.9231 38 1 2.2706 0.6804 5.0734 39 1 2.9414 2.8536 6.0604 40 1 1.2670 3.4387 5.9103 41 1 0.4955 1.6090 7.3961 42 1 2.1700 1.0245 7.5456 43 1 1.2611 3.7145 8.3374 44 1 0.4072 1.9755 9.8045 45 1 2.0818 1.3911 9.9548 46 1 1.1536 2.0690 12.3923 47 1 0.8676 2.1043 15.7175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161501915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:30 Heat of formation + Delta-G solvation = -44.742480 kcal Electronic energy + Delta-G solvation = -26722.462157 eV Core-core repulsion = 22711.786905 eV Total energy + Delta-G solvation = -4010.675251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.27318 -39.47631 -38.34858 -36.74718 -35.36143 -34.56976 -33.89411 -33.04322 -31.37931 -31.04793 -30.15882 -27.36674 -25.66004 -24.57912 -24.52334 -23.22007 -21.98042 -21.67347 -21.04488 -19.27491 -18.46765 -17.89143 -17.28997 -16.48335 -16.19715 -15.97196 -15.89444 -15.62506 -15.51788 -14.82928 -14.56698 -14.47654 -14.29367 -14.20833 -14.07313 -13.79993 -13.53226 -13.40450 -13.02835 -12.91370 -12.42598 -12.13373 -11.94022 -11.89042 -11.67445 -11.49234 -11.48540 -11.34300 -11.11858 -10.99350 -10.57691 -10.40952 -10.33446 -10.23789 -9.71501 -9.53692 -9.53111 -9.39908 -8.50718 -8.11637 -7.98400 -6.43751 -3.84734 0.22347 0.56660 2.45853 2.60590 3.16366 3.25218 3.31151 3.33844 3.88122 3.89852 4.02344 4.07899 4.19152 4.25852 4.28980 4.46164 4.72687 4.79011 4.85725 4.95217 4.97460 5.09382 5.12305 5.13138 5.23302 5.28800 5.34824 5.40028 5.40571 5.43538 5.55032 5.67307 5.74570 5.82256 5.92558 5.93659 5.95875 6.00814 6.08110 6.14791 6.23840 6.99323 7.14336 7.40538 7.53237 7.59411 7.71545 8.04070 8.58884 9.15670 9.51964 10.03211 10.73927 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.031094 B = 0.001426 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.266394 B =19628.023386 C =20403.951095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 C -0.072 4.072 4 C 0.095 3.905 5 N -0.466 5.466 6 C 0.088 3.912 7 C -0.138 4.138 8 C -0.092 4.092 9 C 0.556 3.444 10 O -0.519 6.519 11 N -0.721 5.721 12 C 0.121 3.879 13 C -0.130 4.130 14 C 0.063 3.937 15 N -0.670 5.670 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.401 0.599 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.030 0.970 42 H 0.074 0.926 43 H 0.349 0.651 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.020 -3.941 -29.845 30.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 C -0.075 4.075 4 C -0.063 4.063 5 N -0.175 5.175 6 C -0.068 4.068 7 C -0.158 4.158 8 C -0.103 4.103 9 C 0.343 3.657 10 O -0.396 6.396 11 N -0.373 5.373 12 C -0.003 4.003 13 C -0.168 4.168 14 C -0.068 4.068 15 N -0.302 5.302 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.158 0.842 36 H 0.237 0.763 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.168 0.832 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.226 0.774 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.836 -3.857 -30.509 30.763 hybrid contribution -1.062 0.175 1.734 2.041 sum -0.227 -3.682 -28.775 29.011 Atomic orbital electron populations 1.21584 0.94062 1.02064 1.01471 1.20831 0.96908 0.91001 1.04552 1.21155 0.95932 0.98025 0.92405 1.22773 0.95259 0.90758 0.97461 1.67571 1.10697 1.07509 1.31693 1.22753 0.96702 1.00133 0.87256 1.22371 0.98522 0.94588 1.00334 1.20230 1.01477 0.94718 0.93918 1.18159 0.78195 0.85868 0.83497 1.90726 1.45191 1.16955 1.86753 1.45942 1.67570 1.17438 1.06322 1.21393 1.01459 0.96408 0.81012 1.21756 1.03636 0.98303 0.93150 1.21819 0.99015 0.95973 0.89948 1.60054 1.63130 1.06882 1.00127 1.21671 0.99266 0.97829 0.89440 1.19804 0.84961 0.89083 0.83621 1.90520 1.50633 1.23219 1.82504 1.41866 1.57930 1.15619 1.04542 1.19712 1.41447 0.96562 0.85312 0.87904 1.25267 0.97085 0.97103 0.98456 1.69612 1.45399 1.19343 1.19891 0.85847 0.78845 0.79894 0.79641 1.20421 1.20903 1.19398 0.93373 0.92093 0.92429 0.91274 0.87370 0.82122 0.82014 0.84231 0.76318 0.91077 0.90847 0.90027 0.91173 0.95200 0.90715 0.83182 0.93799 0.89525 0.77437 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.58 37.16 0.36 -0.67 16 2 C -0.10 -0.73 5.35 -27.88 -0.15 -0.88 16 3 C -0.07 -0.58 5.19 -104.06 -0.54 -1.12 16 4 C 0.10 0.71 10.84 -17.59 -0.19 0.52 16 5 N -0.47 -3.91 10.34 -13.31 -0.14 -4.05 16 6 C 0.09 0.58 11.17 -17.60 -0.20 0.38 16 7 C -0.14 -0.84 9.62 -39.03 -0.38 -1.22 16 8 C -0.09 -0.75 5.91 -104.65 -0.62 -1.37 16 9 C 0.56 5.17 7.77 -12.19 -0.09 5.07 16 10 O -0.52 -6.13 12.33 5.36 0.07 -6.07 16 11 N -0.72 -5.33 5.51 -61.15 -0.34 -5.67 16 12 C 0.12 0.98 5.67 -4.04 -0.02 0.95 16 13 C -0.13 -1.10 5.59 -26.73 -0.15 -1.25 16 14 C 0.06 0.68 5.68 -3.83 -0.02 0.66 16 15 N -0.67 -10.22 6.13 -115.06 -0.70 -10.92 16 16 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 17 C 0.44 10.28 7.82 -10.99 -0.09 10.19 16 18 O -0.58 -15.71 15.78 5.54 0.09 -15.63 16 19 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 24 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.54 7.31 -51.93 -0.38 0.16 16 31 H 0.07 0.40 8.06 -51.93 -0.42 -0.02 16 32 H 0.11 1.04 5.64 -51.93 -0.29 0.75 16 33 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.16 0.63 8.06 -52.48 -0.42 0.20 16 35 H 0.14 0.47 6.54 -52.48 -0.34 0.12 16 36 H 0.40 2.04 6.62 -40.82 -0.27 1.77 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.35 5.45 8.43 -39.29 -0.33 5.11 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 47 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 394.33 15.07 5.94 5.94 Total: -1.00 -33.73 394.33 -8.74 -42.48 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -6.94 Total: 11.80 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -2.36 Total: 4.12 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.51 Total: -58.53 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.15 Total: -21.69 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.73 -8.74 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161501915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.265 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds