Wall clock time and date at job start Tue Mar 31 2020 18:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50690 * 109.47500 * 2 1 4 4 N 1.31883 * 119.93706 * 89.99611 * 3 2 1 5 5 N 1.28273 * 122.62955 * 180.02562 * 4 3 2 6 6 C 1.32485 * 122.21604 * 359.97438 * 5 4 3 7 7 O 1.35443 * 120.25038 * 180.02562 * 6 5 4 8 8 C 1.40456 * 119.49523 * 0.02562 * 6 5 4 9 9 C 1.47828 * 121.17601 * 180.02562 * 8 6 5 10 10 O 1.21553 * 120.00225 * 89.99877 * 9 8 6 11 11 N 1.34777 * 119.99791 * 269.71839 * 9 8 6 12 12 C 1.46499 * 120.00199 * 180.27503 * 11 9 8 13 13 C 1.50701 * 109.47264 * 180.02562 * 12 11 9 14 14 C 1.31004 * 119.99505 * 125.00433 * 13 12 11 15 15 C 1.50701 * 119.99505 * 179.97438 * 14 13 12 16 16 N 1.46507 * 109.47106 * 124.99702 * 15 14 13 17 17 C 1.36930 * 120.00072 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00038 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99950 * 180.02562 * 17 16 15 20 20 N 1.31612 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00084 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47260 * 59.99282 * 21 19 17 23 23 H 1.48497 * 109.47433 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47181 * 299.99834 * 21 19 17 25 25 C 1.38484 * 119.93376 * 270.28079 * 3 2 1 26 26 C 1.50700 * 121.05728 * 359.97438 * 25 3 2 27 27 C 1.52998 * 109.47453 * 270.27231 * 26 25 3 28 28 H 1.09005 * 109.46643 * 60.00000 * 1 2 3 29 29 H 1.08999 * 109.47459 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47133 * 300.00057 * 1 2 3 31 31 H 1.09005 * 109.47048 * 239.99217 * 2 1 3 32 32 H 1.09005 * 109.46643 * 120.00000 * 2 1 3 33 33 H 0.96704 * 114.00514 * 269.97786 * 7 6 5 34 34 H 0.97001 * 119.99727 * 0.28399 * 11 9 8 35 35 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 36 36 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 37 37 H 1.07995 * 120.00040 * 305.00247 * 13 12 11 38 38 H 1.07995 * 120.00455 * 359.97438 * 14 13 12 39 39 H 1.08998 * 109.47070 * 244.99673 * 15 14 13 40 40 H 1.08998 * 109.47474 * 5.00251 * 15 14 13 41 41 H 0.97002 * 120.00047 * 0.02562 * 16 15 14 42 42 H 0.97003 * 120.00040 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.46878 * 30.26786 * 26 25 3 44 44 H 1.09002 * 109.47302 * 150.27061 * 26 25 3 45 45 H 1.09003 * 109.46715 * 299.99654 * 27 26 25 46 46 H 1.09002 * 109.47508 * 59.99485 * 27 26 25 47 47 H 1.08998 * 109.47840 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2518 2.0412 1.1429 5 7 2.6785 3.2494 1.2031 6 6 2.9313 3.9642 0.1167 7 8 3.3814 5.2369 0.2267 8 6 2.7290 3.3921 -1.1501 9 6 2.9997 4.1556 -2.3866 10 8 4.1033 4.1181 -2.8948 11 7 2.0212 4.8886 -2.9537 12 6 2.2876 5.6405 -4.1825 13 6 1.0388 6.3702 -4.6057 14 6 1.0706 7.6656 -4.7980 15 6 -0.1781 8.3953 -5.2218 16 7 -0.4521 9.4827 -4.2790 17 6 -1.5436 10.2889 -4.4622 18 1 -2.2023 10.1235 -5.3020 19 6 -1.8028 11.3195 -3.5692 20 7 -0.9999 11.5214 -2.5462 21 14 -3.2922 12.4190 -3.8187 22 1 -4.5272 11.5950 -3.7841 23 1 -3.3448 13.4345 -2.7365 24 1 -3.1892 13.1012 -5.1337 25 6 2.2573 2.0741 -1.2001 26 6 2.0081 1.3871 -2.5180 27 6 3.2818 0.6685 -2.9675 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5140 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.6793 5.9011 0.2582 34 1 1.1405 4.9185 -2.5481 35 1 3.0854 6.3609 -4.0019 36 1 2.5915 4.9520 -4.9710 37 1 0.1178 5.8252 -4.7505 38 1 1.9915 8.2107 -4.6529 39 1 -0.0366 8.8076 -6.2208 40 1 -1.0189 7.7017 -5.2307 41 1 0.1402 9.6320 -3.5254 42 1 -1.1813 12.2414 -1.9219 43 1 1.2029 0.6614 -2.4029 44 1 1.7255 2.1277 -3.2662 45 1 4.0870 1.3943 -3.0827 46 1 3.5645 -0.0721 -2.2194 47 1 3.1015 0.1712 -3.9205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274076443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:04 Heat of formation + Delta-G solvation = -2.729742 kcal Electronic energy + Delta-G solvation = -28110.438705 eV Core-core repulsion = 24101.585262 eV Total energy + Delta-G solvation = -4008.853442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.95657 -39.74750 -38.24444 -36.49898 -36.18949 -34.87002 -34.15883 -32.95222 -31.62395 -30.60931 -30.39502 -27.64902 -25.98528 -25.51784 -24.27320 -23.06750 -22.25844 -21.97392 -20.96325 -19.69940 -19.30344 -18.60653 -17.88021 -17.18329 -16.63951 -16.07275 -15.60886 -15.41024 -15.13703 -14.92144 -14.71676 -14.39598 -14.16726 -14.04217 -13.76231 -13.68148 -13.32059 -13.17091 -12.98225 -12.90047 -12.61318 -12.45373 -12.15548 -12.08721 -11.97274 -11.77541 -11.58285 -11.23688 -11.11862 -10.88786 -10.84952 -10.67693 -10.31936 -10.17051 -9.88585 -9.85567 -9.76758 -9.48324 -9.12605 -8.83668 -7.02802 -5.84613 -3.14692 0.06393 0.30314 2.06320 2.11629 2.74957 2.95538 3.03589 3.38956 3.43586 3.44738 3.60572 3.86517 3.99406 4.21676 4.38832 4.53116 4.58802 4.63333 4.71814 4.79692 4.81652 4.95214 4.99227 5.10919 5.15424 5.19384 5.37278 5.39156 5.42987 5.48458 5.52494 5.54314 5.62756 5.66900 5.72799 5.84325 5.86536 6.01153 6.05217 6.36020 6.46915 6.76387 6.94172 7.01714 7.10094 7.61200 7.75790 8.23132 8.33510 9.44938 10.00098 10.35267 11.37924 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.002260 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.466956 B =12384.488012 C =12868.041709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.072 4.072 3 C 0.064 3.936 4 N -0.202 5.202 5 N -0.252 5.252 6 C 0.291 3.709 7 O -0.466 6.466 8 C -0.144 4.144 9 C 0.573 3.427 10 O -0.515 6.515 11 N -0.713 5.713 12 C 0.155 3.845 13 C -0.206 4.206 14 C -0.100 4.100 15 C 0.172 3.828 16 N -0.729 5.729 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C -0.025 4.025 26 C -0.094 4.094 27 C -0.151 4.151 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.412 0.588 34 H 0.404 0.596 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.032 0.968 40 H 0.026 0.974 41 H 0.385 0.615 42 H 0.257 0.743 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.526 -26.134 1.300 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.082 4.082 4 N -0.046 5.046 5 N -0.104 5.104 6 C 0.105 3.895 7 O -0.272 6.272 8 C -0.160 4.160 9 C 0.356 3.644 10 O -0.390 6.390 11 N -0.364 5.364 12 C 0.033 3.967 13 C -0.226 4.226 14 C -0.120 4.120 15 C 0.045 3.955 16 N -0.374 5.374 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.037 4.037 26 C -0.131 4.131 27 C -0.208 4.208 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.273 0.727 34 H 0.239 0.761 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.219 0.781 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.755 -26.232 2.467 27.200 hybrid contribution -1.337 1.334 -1.081 2.176 sum 5.418 -24.898 1.386 25.518 Atomic orbital electron populations 1.21769 0.93389 1.02788 1.02750 1.20520 0.97033 0.88898 1.04598 1.22766 0.97253 0.98963 0.89184 1.72850 1.06471 1.01021 1.24301 1.73095 1.09750 1.01230 1.26284 1.20873 0.91982 0.88579 0.88096 1.84758 1.35613 1.11697 1.95128 1.21353 1.02646 0.96512 0.95448 1.17645 0.84888 0.79097 0.82816 1.90845 1.22526 1.63032 1.62623 1.46077 1.14215 1.48394 1.27698 1.20414 0.96506 0.94694 0.85074 1.22650 0.98017 0.95836 1.06064 1.23381 0.99778 0.94665 0.94157 1.19836 0.91460 0.90325 0.93915 1.42278 1.31236 1.33875 1.29998 1.19186 1.02113 1.07947 1.08358 0.91117 1.24765 0.99144 0.99376 0.97532 1.69646 1.38742 1.33820 1.15829 0.86237 0.82373 0.80265 0.77111 1.21202 1.21590 1.21153 1.21111 0.93122 0.91651 0.97783 1.20759 1.00271 1.00361 0.91750 1.21782 0.96615 1.00740 1.01664 0.92355 0.91242 0.91822 0.89294 0.89000 0.72735 0.76087 0.90712 0.90687 0.86652 0.87145 0.95045 0.95655 0.78144 0.93327 0.88803 0.89822 0.91482 0.92111 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.78 37.16 0.36 -0.37 16 2 C -0.07 -0.41 5.56 -27.89 -0.16 -0.56 16 3 C 0.06 0.58 6.11 -82.48 -0.50 0.08 16 4 N -0.20 -2.42 11.40 33.56 0.38 -2.03 16 5 N -0.25 -3.37 11.52 30.73 0.35 -3.02 16 6 C 0.29 3.61 7.88 -16.44 -0.13 3.48 16 7 O -0.47 -5.50 13.09 -18.02 -0.24 -5.74 16 8 C -0.14 -1.62 5.69 -104.45 -0.59 -2.21 16 9 C 0.57 6.94 5.62 -12.34 -0.07 6.87 16 10 O -0.52 -8.06 17.11 5.32 0.09 -7.97 16 11 N -0.71 -7.29 5.55 -62.44 -0.35 -7.63 16 12 C 0.16 1.71 6.11 -5.19 -0.03 1.68 16 13 C -0.21 -2.47 9.24 -36.03 -0.33 -2.80 16 14 C -0.10 -1.49 9.24 -36.03 -0.33 -1.83 16 15 C 0.17 3.25 6.70 -5.19 -0.03 3.22 16 16 N -0.73 -17.95 5.59 -61.08 -0.34 -18.29 16 17 C -0.25 -6.72 9.99 -15.06 -0.15 -6.87 16 18 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 21 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C -0.03 -0.23 5.22 -103.84 -0.54 -0.77 16 26 C -0.09 -0.62 5.06 -27.88 -0.14 -0.76 16 27 C -0.15 -1.00 9.78 37.16 0.36 -0.64 16 28 H 0.06 0.27 7.43 -51.93 -0.39 -0.12 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.35 6.00 -51.93 -0.31 0.04 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.41 3.04 9.06 45.56 0.41 3.46 16 34 H 0.40 3.49 8.45 -40.82 -0.34 3.14 16 35 H 0.07 0.91 7.79 -51.93 -0.40 0.50 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.12 1.29 7.84 -52.49 -0.41 0.88 16 38 H 0.11 1.62 7.84 -52.49 -0.41 1.21 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.48 7.79 -51.93 -0.40 0.07 16 41 H 0.38 9.96 7.66 -40.82 -0.31 9.65 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.09 0.41 6.03 -51.93 -0.31 0.09 16 44 H 0.08 0.58 7.25 -51.93 -0.38 0.21 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.35 7.43 -51.93 -0.39 -0.04 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 399.37 15.07 6.02 6.02 Total: -1.00 -34.93 399.37 -6.92 -41.85 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.15 Total: 8.78 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.39 Total: -1.93 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.77 Total: -57.95 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.14 Total: -13.70 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.93 -6.92 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274076443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.115 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds