Wall clock time and date at job start Tue Mar 31 2020 18:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50690 * 109.47500 * 2 1 4 4 N 1.31883 * 119.93706 * 89.99611 * 3 2 1 5 5 N 1.28273 * 122.62955 * 180.02562 * 4 3 2 6 6 C 1.32485 * 122.21604 * 359.97438 * 5 4 3 7 7 O 1.35443 * 120.25038 * 180.02562 * 6 5 4 8 8 C 1.40456 * 119.49523 * 0.02562 * 6 5 4 9 9 C 1.47828 * 121.17601 * 180.02562 * 8 6 5 10 10 O 1.21553 * 120.00225 * 89.99877 * 9 8 6 11 11 N 1.34777 * 119.99791 * 269.71839 * 9 8 6 12 12 C 1.46499 * 120.00199 * 180.27503 * 11 9 8 13 13 C 1.50701 * 109.47264 * 180.02562 * 12 11 9 14 14 C 1.31004 * 119.99505 * 125.00433 * 13 12 11 15 15 C 1.50701 * 119.99505 * 179.97438 * 14 13 12 16 16 N 1.46507 * 109.47106 * 124.99702 * 15 14 13 17 17 C 1.36930 * 120.00072 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00038 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99950 * 180.02562 * 17 16 15 20 20 N 1.31612 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00084 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47260 * 59.99282 * 21 19 17 23 23 H 1.48497 * 109.47433 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47181 * 299.99834 * 21 19 17 25 25 C 1.38484 * 119.93376 * 270.28079 * 3 2 1 26 26 C 1.50700 * 121.05728 * 359.97438 * 25 3 2 27 27 C 1.52998 * 109.47453 * 270.27231 * 26 25 3 28 28 H 1.09005 * 109.46643 * 60.00000 * 1 2 3 29 29 H 1.08999 * 109.47459 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47133 * 300.00057 * 1 2 3 31 31 H 1.09005 * 109.47048 * 239.99217 * 2 1 3 32 32 H 1.09005 * 109.46643 * 120.00000 * 2 1 3 33 33 H 0.96704 * 114.00514 * 269.97786 * 7 6 5 34 34 H 0.97001 * 119.99727 * 0.28399 * 11 9 8 35 35 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 36 36 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 37 37 H 1.07995 * 120.00040 * 305.00247 * 13 12 11 38 38 H 1.07995 * 120.00455 * 359.97438 * 14 13 12 39 39 H 1.08998 * 109.47070 * 244.99673 * 15 14 13 40 40 H 1.08998 * 109.47474 * 5.00251 * 15 14 13 41 41 H 0.97002 * 120.00047 * 0.02562 * 16 15 14 42 42 H 0.97003 * 120.00040 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.46878 * 30.26786 * 26 25 3 44 44 H 1.09002 * 109.47302 * 150.27061 * 26 25 3 45 45 H 1.09003 * 109.46715 * 299.99654 * 27 26 25 46 46 H 1.09002 * 109.47508 * 59.99485 * 27 26 25 47 47 H 1.08998 * 109.47840 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2518 2.0412 1.1429 5 7 2.6785 3.2494 1.2031 6 6 2.9313 3.9642 0.1167 7 8 3.3814 5.2369 0.2267 8 6 2.7290 3.3921 -1.1501 9 6 2.9997 4.1556 -2.3866 10 8 4.1033 4.1181 -2.8948 11 7 2.0212 4.8886 -2.9537 12 6 2.2876 5.6405 -4.1825 13 6 1.0388 6.3702 -4.6057 14 6 1.0706 7.6656 -4.7980 15 6 -0.1781 8.3953 -5.2218 16 7 -0.4521 9.4827 -4.2790 17 6 -1.5436 10.2889 -4.4622 18 1 -2.2023 10.1235 -5.3020 19 6 -1.8028 11.3195 -3.5692 20 7 -0.9999 11.5214 -2.5462 21 14 -3.2922 12.4190 -3.8187 22 1 -4.5272 11.5950 -3.7841 23 1 -3.3448 13.4345 -2.7365 24 1 -3.1892 13.1012 -5.1337 25 6 2.2573 2.0741 -1.2001 26 6 2.0081 1.3871 -2.5180 27 6 3.2818 0.6685 -2.9675 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5140 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.6793 5.9011 0.2582 34 1 1.1405 4.9185 -2.5481 35 1 3.0854 6.3609 -4.0019 36 1 2.5915 4.9520 -4.9710 37 1 0.1178 5.8252 -4.7505 38 1 1.9915 8.2107 -4.6529 39 1 -0.0366 8.8076 -6.2208 40 1 -1.0189 7.7017 -5.2307 41 1 0.1402 9.6320 -3.5254 42 1 -1.1813 12.2414 -1.9219 43 1 1.2029 0.6614 -2.4029 44 1 1.7255 2.1277 -3.2662 45 1 4.0870 1.3943 -3.0827 46 1 3.5645 -0.0721 -2.2194 47 1 3.1015 0.1712 -3.9205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274076443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:03 Heat of formation + Delta-G solvation = -31.305828 kcal Electronic energy + Delta-G solvation = -28111.677857 eV Core-core repulsion = 24101.585262 eV Total energy + Delta-G solvation = -4010.092595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.78440 -40.71966 -39.08688 -37.73815 -36.94450 -36.31896 -34.86397 -34.38162 -32.62192 -32.07051 -31.07892 -28.94485 -27.01867 -26.18970 -25.71631 -24.00964 -23.31946 -22.93750 -21.86860 -20.84734 -20.15105 -19.49625 -19.11383 -18.71643 -17.59616 -17.00946 -16.73764 -16.35801 -16.16392 -15.94463 -15.68160 -15.34956 -15.23209 -15.14862 -14.92401 -14.74219 -14.53030 -14.22615 -13.74136 -13.61464 -13.52594 -13.35880 -13.33278 -13.04491 -12.90022 -12.71786 -12.62715 -12.33626 -12.25522 -12.03741 -12.00081 -11.87145 -11.80225 -11.70047 -11.14125 -11.03546 -10.66820 -10.62920 -10.45929 -10.07788 -9.02273 -7.97122 -5.26779 -0.75856 -0.48393 0.98750 1.14080 1.47802 1.50338 1.56729 1.92996 2.03915 2.20245 2.56238 2.87598 3.16461 3.24300 3.36967 3.48375 3.67202 3.72457 3.95010 4.07505 4.13693 4.20986 4.23002 4.31771 4.37980 4.42068 4.44043 4.53731 4.64202 4.68501 4.70365 4.91524 4.92342 4.93065 5.00073 5.01488 5.06840 5.09658 5.18765 5.27664 5.43178 5.46720 5.63591 5.81478 6.17918 6.23401 6.24930 6.84164 7.31356 7.39651 8.05775 8.29062 9.26019 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.002260 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.466956 B =12384.488012 C =12868.041709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C 0.069 3.931 4 N -0.226 5.226 5 N -0.284 5.284 6 C 0.281 3.719 7 O -0.481 6.481 8 C -0.158 4.158 9 C 0.581 3.419 10 O -0.554 6.554 11 N -0.699 5.699 12 C 0.157 3.843 13 C -0.162 4.162 14 C -0.129 4.129 15 C 0.172 3.828 16 N -0.744 5.744 17 C -0.249 4.249 18 H 0.078 0.922 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.276 1.276 23 H -0.296 1.296 24 H -0.277 1.277 25 C -0.013 4.013 26 C -0.093 4.093 27 C -0.149 4.149 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.426 0.574 34 H 0.415 0.585 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.134 0.866 38 H 0.108 0.892 39 H 0.030 0.970 40 H 0.035 0.965 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.126 0.874 44 H 0.083 0.917 45 H 0.035 0.965 46 H 0.071 0.929 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 -28.664 -0.087 28.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.077 4.077 4 N -0.069 5.069 5 N -0.135 5.135 6 C 0.094 3.906 7 O -0.290 6.290 8 C -0.173 4.173 9 C 0.365 3.635 10 O -0.431 6.431 11 N -0.350 5.350 12 C 0.035 3.965 13 C -0.181 4.181 14 C -0.148 4.148 15 C 0.047 3.953 16 N -0.387 5.387 17 C -0.381 4.381 18 H 0.096 0.904 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.203 1.203 25 C -0.025 4.025 26 C -0.130 4.130 27 C -0.206 4.206 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.289 0.711 34 H 0.251 0.749 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.151 0.849 38 H 0.126 0.874 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.144 0.856 44 H 0.101 0.899 45 H 0.054 0.946 46 H 0.090 0.910 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.281 -28.779 1.059 29.279 hybrid contribution -0.875 1.960 -0.710 2.261 sum 4.406 -26.820 0.350 27.181 Atomic orbital electron populations 1.21776 0.92487 1.03995 1.02243 1.20722 0.97622 0.86583 1.06046 1.23342 0.95823 1.00224 0.88332 1.72770 1.07356 1.00829 1.25959 1.73016 1.11185 1.02160 1.27101 1.20964 0.92439 0.88687 0.88493 1.84716 1.36881 1.12168 1.95210 1.21321 1.03981 0.97554 0.94425 1.17680 0.84361 0.78772 0.82699 1.90828 1.24050 1.64444 1.63804 1.45918 1.14414 1.47461 1.27255 1.20365 0.95616 0.94766 0.85745 1.22737 0.98745 0.94671 1.01941 1.23025 0.98270 0.95526 0.97992 1.19923 0.93517 0.89208 0.92669 1.42522 1.30422 1.35089 1.30687 1.19625 1.02568 1.07909 1.07978 0.90384 1.25595 1.02172 1.01254 0.97712 1.69806 1.40689 1.34545 1.16912 0.85201 0.79338 0.78290 0.76872 1.20149 1.22256 1.20342 1.21481 0.91225 0.90685 0.99116 1.20919 1.01253 1.00882 0.89989 1.21780 0.95462 1.00230 1.03153 0.91710 0.89173 0.93534 0.86694 0.88736 0.71119 0.74880 0.91788 0.89167 0.84862 0.87440 0.95243 0.94757 0.79397 0.93953 0.85602 0.89895 0.94576 0.91012 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.78 71.98 0.70 -0.32 16 2 C -0.07 -0.61 5.56 29.85 0.17 -0.45 16 3 C 0.07 1.17 6.11 42.61 0.26 1.43 16 4 N -0.23 -5.39 11.40 -47.73 -0.54 -5.93 16 5 N -0.28 -7.80 11.52 -169.57 -1.95 -9.75 16 6 C 0.28 7.13 7.88 85.14 0.67 7.80 16 7 O -0.48 -11.83 13.09 -87.40 -1.14 -12.98 16 8 C -0.16 -3.47 5.69 -19.75 -0.11 -3.59 16 9 C 0.58 13.71 5.62 86.78 0.49 14.19 16 10 O -0.55 -17.27 17.11 -3.88 -0.07 -17.33 16 11 N -0.70 -13.24 5.55 -469.73 -2.60 -15.84 16 12 C 0.16 3.18 6.11 85.63 0.52 3.70 16 13 C -0.16 -3.50 9.24 25.64 0.24 -3.27 16 14 C -0.13 -3.71 9.24 25.64 0.24 -3.47 16 15 C 0.17 6.40 6.70 85.63 0.57 6.97 16 16 N -0.74 -36.74 5.59 -347.17 -1.94 -38.68 16 17 C -0.25 -13.60 9.99 84.03 0.84 -12.76 16 18 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 19 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 20 N -0.97 -58.53 13.06 21.65 0.28 -58.25 16 21 Si 0.97 45.16 29.55 68.60 2.03 47.18 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 C -0.01 -0.22 5.22 -19.36 -0.10 -0.32 16 26 C -0.09 -0.95 5.06 29.85 0.15 -0.80 16 27 C -0.15 -1.60 9.78 71.98 0.70 -0.90 16 28 H 0.06 0.37 7.43 -2.38 -0.02 0.35 16 29 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.42 6.00 -2.38 -0.01 0.40 16 32 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.43 6.71 9.06 -74.05 -0.67 6.04 16 34 H 0.41 6.33 8.45 -92.71 -0.78 5.55 16 35 H 0.06 1.50 7.79 -2.39 -0.02 1.48 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.13 2.49 7.84 -2.91 -0.02 2.47 16 38 H 0.11 3.16 7.84 -2.91 -0.02 3.14 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.03 1.22 7.79 -2.39 -0.02 1.20 16 41 H 0.37 19.73 7.66 -92.71 -0.71 19.02 16 42 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.13 0.51 6.03 -2.39 -0.01 0.50 16 44 H 0.08 0.91 7.25 -2.39 -0.02 0.89 16 45 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.07 0.61 7.43 -2.39 -0.02 0.59 16 47 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -77.04 399.37 -1.28 -78.32 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: -1.14 Total: 28.81 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.81 Total: 4.46 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -6.76 Total: -128.45 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -1.21 Total: -30.31 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -77.04 -1.28 -78.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274076443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.011 kcal (2) G-P(sol) polarization free energy of solvation -77.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds