Wall clock time and date at job start Tue Mar 31 2020 17:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47477 * 2 1 4 4 N 1.32166 * 120.53888 * 275.18560 * 3 2 1 5 5 C 1.31853 * 120.96796 * 179.97438 * 4 3 2 6 6 N 1.31886 * 122.09497 * 359.97438 * 5 4 3 7 7 C 1.32125 * 120.96814 * 359.70566 * 6 5 4 8 8 C 1.39934 * 120.53925 * 95.15428 * 3 2 1 9 9 C 1.47835 * 120.93543 * 0.03151 * 8 3 2 10 10 O 1.21552 * 119.99740 * 306.79002 * 9 8 3 11 11 N 1.34778 * 119.99737 * 126.79725 * 9 8 3 12 12 C 1.47148 * 120.98446 * 354.18685 * 11 9 8 13 13 C 1.53297 * 108.38534 * 230.51645 * 12 11 9 14 14 O 1.42963 * 109.22176 * 307.69760 * 13 12 11 15 15 C 1.42971 * 114.16723 * 62.57700 * 14 13 12 16 16 H 1.08999 * 109.54817 * 57.37138 * 15 14 13 17 17 C 1.52997 * 109.50975 * 177.49567 * 15 14 13 18 18 H 1.09002 * 109.47221 * 184.74598 * 17 15 14 19 19 C 1.52995 * 109.47653 * 304.75048 * 17 15 14 20 20 N 1.46508 * 109.46996 * 64.75253 * 17 15 14 21 21 C 1.36935 * 119.99653 * 154.99934 * 20 17 15 22 22 H 1.07997 * 120.00516 * 359.97438 * 21 20 17 23 23 C 1.38821 * 119.99502 * 180.27455 * 21 20 17 24 24 N 1.31618 * 120.00130 * 359.72231 * 23 21 20 25 25 Si 1.86804 * 119.99750 * 179.72453 * 23 21 20 26 26 H 1.48501 * 109.47226 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47048 * 119.99867 * 25 23 21 28 28 H 1.48496 * 109.46522 * 239.99785 * 25 23 21 29 29 C 1.47157 * 120.97721 * 174.16382 * 11 9 8 30 30 H 1.09004 * 109.47267 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47189 * 300.00317 * 1 2 3 32 32 H 1.09004 * 109.47085 * 59.99749 * 1 2 3 33 33 H 1.08998 * 109.47189 * 239.99683 * 2 1 3 34 34 H 1.09004 * 109.47085 * 120.00251 * 2 1 3 35 35 H 1.07999 * 118.95026 * 179.97438 * 5 4 3 36 36 H 1.08005 * 120.54277 * 180.31287 * 7 6 5 37 37 H 1.08998 * 109.68128 * 350.23407 * 12 11 9 38 38 H 1.08997 * 109.68231 * 110.79113 * 12 11 9 39 39 H 1.08997 * 109.51128 * 67.61517 * 13 12 11 40 40 H 1.08993 * 109.51397 * 187.77327 * 13 12 11 41 41 H 1.08999 * 109.47512 * 180.02562 * 19 17 15 42 42 H 1.09000 * 109.47154 * 300.00114 * 19 17 15 43 43 H 1.09001 * 109.47055 * 60.00062 * 19 17 15 44 44 H 0.96996 * 120.00121 * 334.99398 * 20 17 15 45 45 H 0.96990 * 119.99862 * 180.02562 * 24 23 21 46 46 H 1.08990 * 109.68406 * 9.76240 * 29 11 9 47 47 H 1.08994 * 109.70969 * 249.22557 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.1593 2.0882 -1.1337 5 6 2.5975 3.3317 -1.1435 6 7 2.9277 3.9671 -0.0359 7 6 2.8259 3.3776 1.1422 8 6 2.3715 2.0550 1.2004 9 6 2.2468 1.3503 2.4939 10 8 1.1938 0.8269 2.8018 11 7 3.3006 1.2883 3.3319 12 6 4.6195 1.8024 2.9297 13 6 5.6666 0.7180 3.2085 14 8 5.5420 0.2808 4.5639 15 6 4.2840 -0.3258 4.8699 16 1 4.1167 -1.1736 4.2056 17 6 4.2888 -0.8076 6.3221 18 1 3.3631 -1.3441 6.5300 19 6 5.4804 -1.7407 6.5459 20 7 4.3966 0.3459 7.2189 21 6 3.9229 0.2628 8.5010 22 1 3.4695 -0.6528 8.8510 23 6 4.0199 1.3576 9.3490 24 7 4.5721 2.4736 8.9224 25 14 3.3668 1.2469 11.0956 26 1 2.7976 -0.1051 11.3265 27 1 4.4746 1.4885 12.0546 28 1 2.3085 2.2695 11.2940 29 6 3.1661 0.7051 4.6762 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.6890 3.8463 -2.0885 36 1 3.0934 3.9061 2.0453 37 1 4.6119 2.0404 1.8660 38 1 4.8557 2.6974 3.5051 39 1 5.5046 -0.1256 2.5376 40 1 6.6645 1.1257 3.0478 41 1 5.4836 -2.0843 7.5803 42 1 5.4002 -2.5989 5.8787 43 1 6.4062 -1.2042 6.3381 44 1 4.8036 1.1683 6.9045 45 1 4.6402 3.2384 9.5150 46 1 2.1962 0.2167 4.7691 47 1 3.2556 1.4893 5.4278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276811286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:38 Heat of formation + Delta-G solvation = -12.273343 kcal Electronic energy + Delta-G solvation = -29917.260406 eV Core-core repulsion = 25907.993122 eV Total energy + Delta-G solvation = -4009.267284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.71799 -40.07191 -38.40007 -35.70991 -35.36037 -34.59796 -33.26613 -32.32251 -31.35280 -30.22179 -28.42809 -27.87410 -25.54994 -25.39827 -24.11607 -23.56786 -22.53974 -22.15497 -19.90120 -19.61970 -18.28322 -17.66322 -17.30122 -17.16946 -16.52715 -15.97868 -15.58464 -15.14198 -14.82057 -14.68956 -14.49792 -14.24372 -14.21728 -14.14267 -13.73259 -13.39930 -13.24830 -13.00679 -12.82758 -12.47297 -12.06590 -11.98737 -11.88673 -11.83786 -11.43074 -11.26307 -11.21930 -10.91865 -10.87499 -10.81767 -10.51772 -10.36091 -10.14090 -9.97906 -9.91510 -9.73810 -9.63226 -9.61222 -8.95761 -8.49624 -6.95939 -5.76883 -3.05410 0.23152 0.64223 2.41573 2.72919 3.34039 3.43317 3.49543 3.51286 3.60496 3.74858 3.89831 3.97993 4.12894 4.56018 4.58479 4.72433 4.84060 4.87485 4.92783 5.03126 5.05401 5.21797 5.23285 5.32056 5.41700 5.43049 5.57864 5.62289 5.68010 5.69971 5.77689 5.78917 5.91297 5.94656 6.08348 6.17762 6.25797 6.36646 6.46482 6.52640 6.63561 6.76042 7.11712 7.20002 7.40096 7.64388 7.70771 7.92229 8.41258 9.53828 10.09567 10.46498 11.45406 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.003039 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.290701 B = 9211.933971 C = 9330.950236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C 0.225 3.775 4 N -0.519 5.519 5 C 0.309 3.691 6 N -0.522 5.522 7 C 0.185 3.815 8 C -0.230 4.230 9 C 0.569 3.431 10 O -0.520 6.520 11 N -0.603 5.603 12 C 0.069 3.931 13 C 0.050 3.950 14 O -0.357 6.357 15 C 0.077 3.923 16 H 0.056 0.944 17 C 0.183 3.817 18 H 0.061 0.939 19 C -0.160 4.160 20 N -0.718 5.718 21 C -0.239 4.239 22 H 0.071 0.929 23 C -0.011 4.011 24 N -0.930 5.930 25 Si 0.904 3.096 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.086 3.914 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.201 0.799 36 H 0.175 0.825 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.104 0.896 41 H 0.053 0.947 42 H 0.032 0.968 43 H 0.056 0.944 44 H 0.389 0.611 45 H 0.254 0.746 46 H 0.100 0.900 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 -2.196 -21.384 21.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C 0.078 3.922 4 N -0.233 5.233 5 C 0.022 3.978 6 N -0.236 5.236 7 C 0.018 3.982 8 C -0.238 4.238 9 C 0.354 3.646 10 O -0.397 6.397 11 N -0.336 5.336 12 C -0.055 4.055 13 C -0.028 4.028 14 O -0.275 6.275 15 C 0.018 3.982 16 H 0.074 0.926 17 C 0.072 3.928 18 H 0.078 0.922 19 C -0.220 4.220 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.089 0.911 23 C -0.207 4.207 24 N -0.578 5.578 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 C -0.035 4.035 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.218 0.782 36 H 0.192 0.808 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.122 0.878 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.224 0.776 45 H 0.064 0.936 46 H 0.118 0.882 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.834 -2.018 -21.783 21.953 hybrid contribution -0.268 0.099 1.408 1.437 sum -2.102 -1.919 -20.375 20.573 Atomic orbital electron populations 1.21659 0.92638 1.02771 1.02778 1.20620 0.97977 0.88952 1.03989 1.21872 0.87009 0.96681 0.86599 1.68341 1.15673 1.09797 1.29480 1.25201 0.88047 0.87307 0.97233 1.68486 1.17773 1.38319 0.98992 1.23539 0.87851 0.90076 0.96749 1.21669 1.07383 0.98400 0.96314 1.17790 0.83969 0.79989 0.82811 1.90808 1.27567 1.45908 1.75380 1.48174 1.09200 1.60130 1.16073 1.22581 0.83084 0.98961 1.00842 1.22857 0.98895 0.95689 0.85391 1.88129 1.34848 1.78601 1.25934 1.22937 0.83030 0.93393 0.98819 0.92633 1.20262 0.96873 0.90098 0.85574 0.92153 1.22327 1.00720 0.98293 1.00636 1.42421 1.71997 1.11376 1.10268 1.19279 1.31472 0.97756 0.88492 0.91127 1.24715 1.01619 0.96092 0.98318 1.69670 1.49669 1.02888 1.35597 0.86160 0.78065 0.77194 0.85023 1.20573 1.21957 1.21953 1.22549 1.00776 0.98846 0.81363 0.91512 0.91161 0.92544 0.89396 0.89570 0.78243 0.80793 0.90058 0.89465 0.93291 0.87773 0.92768 0.94874 0.92461 0.77625 0.93624 0.88211 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.82 37.16 0.36 -1.04 16 2 C -0.08 -0.79 5.63 -27.89 -0.16 -0.94 16 3 C 0.23 2.53 6.12 -81.82 -0.50 2.03 16 4 N -0.52 -5.51 10.36 -10.48 -0.11 -5.62 16 5 C 0.31 2.85 12.27 -92.02 -1.13 1.73 16 6 N -0.52 -5.44 10.42 -14.24 -0.15 -5.59 16 7 C 0.18 1.96 9.18 -16.78 -0.15 1.80 16 8 C -0.23 -2.71 4.62 -104.69 -0.48 -3.19 16 9 C 0.57 7.91 6.23 -12.33 -0.08 7.84 16 10 O -0.52 -8.66 14.48 5.32 0.08 -8.58 16 11 N -0.60 -8.20 3.02 -173.40 -0.52 -8.72 16 12 C 0.07 0.76 5.76 -3.53 -0.02 0.74 16 13 C 0.05 0.58 6.99 37.31 0.26 0.84 16 14 O -0.36 -5.69 9.24 -35.23 -0.33 -6.01 16 15 C 0.08 1.24 2.57 -26.58 -0.07 1.17 16 16 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 17 C 0.18 3.47 2.80 -67.93 -0.19 3.28 16 18 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 19 C -0.16 -2.86 9.30 37.15 0.35 -2.52 16 20 N -0.72 -17.10 4.24 -53.42 -0.23 -17.32 16 21 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -27.36 13.06 55.49 0.72 -26.63 16 25 Si 0.90 22.08 29.55 -169.99 -5.02 17.05 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 C 0.09 1.40 5.84 -3.53 -0.02 1.38 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.85 7.18 -51.93 -0.37 0.48 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.95 6.66 -51.93 -0.35 0.60 16 35 H 0.20 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.18 1.61 7.80 -52.48 -0.41 1.20 16 37 H 0.08 0.75 5.61 -51.93 -0.29 0.46 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 1.08 7.57 -51.93 -0.39 0.69 16 44 H 0.39 9.98 7.08 -40.82 -0.29 9.69 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.10 1.71 7.06 -51.93 -0.37 1.34 16 47 H 0.10 2.00 6.94 -51.93 -0.36 1.64 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -31.69 379.70 -8.93 -40.62 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.02 Total: 8.89 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -2.08 Total: 6.19 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.28 Total: -63.88 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.25 Total: -14.59 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.69 -8.93 -40.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276811286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.344 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds