Wall clock time and date at job start Tue Mar 31 2020 17:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47477 * 2 1 4 4 N 1.32166 * 120.53888 * 275.18560 * 3 2 1 5 5 C 1.31853 * 120.96796 * 179.97438 * 4 3 2 6 6 N 1.31886 * 122.09497 * 359.97438 * 5 4 3 7 7 C 1.32125 * 120.96814 * 359.70566 * 6 5 4 8 8 C 1.39934 * 120.53925 * 95.15428 * 3 2 1 9 9 C 1.47835 * 120.93543 * 0.03151 * 8 3 2 10 10 O 1.21552 * 119.99740 * 306.79002 * 9 8 3 11 11 N 1.34778 * 119.99737 * 126.79725 * 9 8 3 12 12 C 1.47148 * 120.98446 * 354.18685 * 11 9 8 13 13 C 1.53297 * 108.38534 * 230.51645 * 12 11 9 14 14 O 1.42963 * 109.22176 * 307.69760 * 13 12 11 15 15 C 1.42971 * 114.16723 * 62.57700 * 14 13 12 16 16 H 1.08999 * 109.54817 * 57.37138 * 15 14 13 17 17 C 1.52997 * 109.50975 * 177.49567 * 15 14 13 18 18 H 1.09002 * 109.47221 * 184.74598 * 17 15 14 19 19 C 1.52995 * 109.47653 * 304.75048 * 17 15 14 20 20 N 1.46508 * 109.46996 * 64.75253 * 17 15 14 21 21 C 1.36935 * 119.99653 * 154.99934 * 20 17 15 22 22 H 1.07997 * 120.00516 * 359.97438 * 21 20 17 23 23 C 1.38821 * 119.99502 * 180.27455 * 21 20 17 24 24 N 1.31618 * 120.00130 * 359.72231 * 23 21 20 25 25 Si 1.86804 * 119.99750 * 179.72453 * 23 21 20 26 26 H 1.48501 * 109.47226 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47048 * 119.99867 * 25 23 21 28 28 H 1.48496 * 109.46522 * 239.99785 * 25 23 21 29 29 C 1.47157 * 120.97721 * 174.16382 * 11 9 8 30 30 H 1.09004 * 109.47267 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47189 * 300.00317 * 1 2 3 32 32 H 1.09004 * 109.47085 * 59.99749 * 1 2 3 33 33 H 1.08998 * 109.47189 * 239.99683 * 2 1 3 34 34 H 1.09004 * 109.47085 * 120.00251 * 2 1 3 35 35 H 1.07999 * 118.95026 * 179.97438 * 5 4 3 36 36 H 1.08005 * 120.54277 * 180.31287 * 7 6 5 37 37 H 1.08998 * 109.68128 * 350.23407 * 12 11 9 38 38 H 1.08997 * 109.68231 * 110.79113 * 12 11 9 39 39 H 1.08997 * 109.51128 * 67.61517 * 13 12 11 40 40 H 1.08993 * 109.51397 * 187.77327 * 13 12 11 41 41 H 1.08999 * 109.47512 * 180.02562 * 19 17 15 42 42 H 1.09000 * 109.47154 * 300.00114 * 19 17 15 43 43 H 1.09001 * 109.47055 * 60.00062 * 19 17 15 44 44 H 0.96996 * 120.00121 * 334.99398 * 20 17 15 45 45 H 0.96990 * 119.99862 * 180.02562 * 24 23 21 46 46 H 1.08990 * 109.68406 * 9.76240 * 29 11 9 47 47 H 1.08994 * 109.70969 * 249.22557 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.1593 2.0882 -1.1337 5 6 2.5975 3.3317 -1.1435 6 7 2.9277 3.9671 -0.0359 7 6 2.8259 3.3776 1.1422 8 6 2.3715 2.0550 1.2004 9 6 2.2468 1.3503 2.4939 10 8 1.1938 0.8269 2.8018 11 7 3.3006 1.2883 3.3319 12 6 4.6195 1.8024 2.9297 13 6 5.6666 0.7180 3.2085 14 8 5.5420 0.2808 4.5639 15 6 4.2840 -0.3258 4.8699 16 1 4.1167 -1.1736 4.2056 17 6 4.2888 -0.8076 6.3221 18 1 3.3631 -1.3441 6.5300 19 6 5.4804 -1.7407 6.5459 20 7 4.3966 0.3459 7.2189 21 6 3.9229 0.2628 8.5010 22 1 3.4695 -0.6528 8.8510 23 6 4.0199 1.3576 9.3490 24 7 4.5721 2.4736 8.9224 25 14 3.3668 1.2469 11.0956 26 1 2.7976 -0.1051 11.3265 27 1 4.4746 1.4885 12.0546 28 1 2.3085 2.2695 11.2940 29 6 3.1661 0.7051 4.6762 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.6890 3.8463 -2.0885 36 1 3.0934 3.9061 2.0453 37 1 4.6119 2.0404 1.8660 38 1 4.8557 2.6974 3.5051 39 1 5.5046 -0.1256 2.5376 40 1 6.6645 1.1257 3.0478 41 1 5.4836 -2.0843 7.5803 42 1 5.4002 -2.5989 5.8787 43 1 6.4062 -1.2042 6.3381 44 1 4.8036 1.1683 6.9045 45 1 4.6402 3.2384 9.5150 46 1 2.1962 0.2167 4.7691 47 1 3.2556 1.4893 5.4278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276811286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:38 Heat of formation + Delta-G solvation = -32.707900 kcal Electronic energy + Delta-G solvation = -29918.146515 eV Core-core repulsion = 25907.993122 eV Total energy + Delta-G solvation = -4010.153393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.59360 -41.16105 -39.58450 -37.15112 -36.32623 -35.77053 -34.26113 -33.99485 -32.27766 -31.54430 -30.12787 -29.01016 -26.53781 -26.22665 -25.72133 -24.98130 -23.67851 -22.99050 -21.31111 -20.75661 -19.36894 -19.12936 -18.56365 -17.93979 -17.72971 -17.21523 -16.81602 -16.29914 -16.09808 -15.92434 -15.68295 -15.42515 -15.26466 -15.05119 -14.97045 -14.74865 -14.50374 -14.21324 -13.98127 -13.62815 -13.50148 -13.20929 -13.03143 -12.87644 -12.78322 -12.62032 -12.56306 -12.48015 -12.12153 -12.04006 -11.82780 -11.71719 -11.67523 -11.52287 -11.14956 -11.05524 -10.94008 -10.68323 -10.44408 -9.68248 -8.93791 -7.88918 -5.15637 -0.59580 -0.18453 1.35738 1.48922 1.49757 1.58802 1.63993 2.53100 2.58986 2.76818 2.84131 3.00138 3.16621 3.19578 3.45668 3.65528 3.72466 3.90294 3.91814 3.96762 4.08444 4.10255 4.18637 4.25634 4.26911 4.29264 4.45340 4.52319 4.61784 4.66160 4.72882 4.77288 4.85181 4.92077 4.99754 5.00311 5.11313 5.12990 5.19340 5.26130 5.29451 5.56639 5.63315 5.70634 6.12865 6.24291 6.33366 6.82378 6.86353 7.40611 8.15762 8.40993 9.34351 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.003039 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.290701 B = 9211.933971 C = 9330.950236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 C 0.224 3.776 4 N -0.526 5.526 5 C 0.315 3.685 6 N -0.530 5.530 7 C 0.189 3.811 8 C -0.243 4.243 9 C 0.572 3.428 10 O -0.553 6.553 11 N -0.601 5.601 12 C 0.070 3.930 13 C 0.045 3.955 14 O -0.380 6.380 15 C 0.092 3.908 16 H 0.078 0.922 17 C 0.174 3.826 18 H 0.061 0.939 19 C -0.148 4.148 20 N -0.726 5.726 21 C -0.232 4.232 22 H 0.075 0.925 23 C -0.073 4.073 24 N -0.966 5.966 25 Si 0.964 3.036 26 H -0.267 1.267 27 H -0.297 1.297 28 H -0.298 1.298 29 C 0.097 3.903 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.184 0.816 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.128 0.872 41 H 0.037 0.963 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.377 0.623 45 H 0.248 0.752 46 H 0.087 0.913 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.027 -2.906 -23.650 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 C 0.077 3.923 4 N -0.240 5.240 5 C 0.029 3.971 6 N -0.244 5.244 7 C 0.022 3.978 8 C -0.251 4.251 9 C 0.359 3.641 10 O -0.432 6.432 11 N -0.333 5.333 12 C -0.052 4.052 13 C -0.032 4.032 14 O -0.299 6.299 15 C 0.032 3.968 16 H 0.096 0.904 17 C 0.065 3.935 18 H 0.079 0.921 19 C -0.208 4.208 20 N -0.367 5.367 21 C -0.364 4.364 22 H 0.093 0.907 23 C -0.265 4.265 24 N -0.617 5.617 25 Si 0.794 3.206 26 H -0.191 1.191 27 H -0.224 1.224 28 H -0.225 1.225 29 C -0.026 4.026 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.253 0.747 36 H 0.201 0.799 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.146 0.854 41 H 0.056 0.944 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.210 0.790 45 H 0.057 0.943 46 H 0.105 0.895 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.434 -2.767 -24.088 24.289 hybrid contribution -0.389 0.307 1.962 2.024 sum -1.823 -2.460 -22.126 22.337 Atomic orbital electron populations 1.21602 0.92652 1.03369 1.01684 1.20640 0.97878 0.88631 1.04296 1.22045 0.86488 0.97150 0.86634 1.68440 1.16200 1.10422 1.28889 1.25974 0.86098 0.86866 0.98195 1.68590 1.18309 1.38361 0.99124 1.23695 0.87104 0.89559 0.97415 1.21458 1.09494 0.98907 0.95252 1.18085 0.83279 0.79390 0.83343 1.90789 1.28779 1.47398 1.76225 1.48157 1.10303 1.59909 1.14938 1.22713 0.81599 0.98712 1.02160 1.23146 1.00205 0.96326 0.83484 1.88088 1.34280 1.78864 1.28674 1.22641 0.83168 0.93865 0.97085 0.90374 1.20500 0.97344 0.88955 0.86740 0.92097 1.22153 0.99315 0.98893 1.00424 1.42528 1.71703 1.12433 1.10086 1.19636 1.29747 0.97468 0.89572 0.90685 1.25424 1.03082 0.96150 1.01871 1.69815 1.51842 1.03464 1.36559 0.85200 0.77034 0.77433 0.80887 1.19137 1.22431 1.22514 1.22152 1.00422 0.97827 0.82168 0.90144 0.93751 0.91962 0.87532 0.90690 0.74678 0.79944 0.87677 0.89755 0.91690 0.85382 0.94385 0.91486 0.93559 0.78973 0.94315 0.89492 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.82 71.98 0.71 -1.87 16 2 C -0.08 -1.45 5.63 29.85 0.17 -1.28 16 3 C 0.22 4.67 6.12 42.92 0.26 4.93 16 4 N -0.53 -9.86 10.36 -187.06 -1.94 -11.80 16 5 C 0.31 4.90 12.27 180.84 2.22 7.12 16 6 N -0.53 -9.81 10.42 -198.97 -2.07 -11.88 16 7 C 0.19 3.72 9.18 85.07 0.78 4.50 16 8 C -0.24 -5.47 4.62 -19.91 -0.09 -5.56 16 9 C 0.57 15.82 6.23 86.78 0.54 16.36 16 10 O -0.55 -18.80 14.48 -3.88 -0.06 -18.86 16 11 N -0.60 -16.17 3.02 -820.79 -2.48 -18.65 16 12 C 0.07 1.47 5.76 86.36 0.50 1.96 16 13 C 0.05 0.95 6.99 72.08 0.50 1.46 16 14 O -0.38 -11.70 9.24 -148.98 -1.38 -13.08 16 15 C 0.09 2.88 2.57 30.69 0.08 2.96 16 16 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 17 C 0.17 6.56 2.80 44.99 0.13 6.69 16 18 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 19 C -0.15 -5.14 9.30 71.98 0.67 -4.47 16 20 N -0.73 -35.25 4.24 -322.93 -1.37 -36.62 16 21 C -0.23 -12.56 9.93 84.04 0.83 -11.73 16 22 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 23 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 24 N -0.97 -58.37 13.06 21.65 0.28 -58.09 16 25 Si 0.96 46.11 29.55 68.60 2.03 48.14 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 28 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 29 C 0.10 3.24 5.84 86.35 0.50 3.74 16 30 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.04 1.08 7.18 -2.39 -0.02 1.06 16 32 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.59 6.66 -2.38 -0.02 1.58 16 35 H 0.24 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.18 3.16 7.80 -2.91 -0.02 3.14 16 37 H 0.11 1.71 5.61 -2.39 -0.01 1.69 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.05 1.70 7.57 -2.39 -0.02 1.68 16 44 H 0.38 19.98 7.08 -92.71 -0.66 19.32 16 45 H 0.25 14.63 8.31 -92.72 -0.77 13.86 16 46 H 0.09 3.09 7.06 -2.39 -0.02 3.07 16 47 H 0.07 2.74 6.94 -2.39 -0.02 2.72 16 Total: -1.00 -69.57 379.70 1.62 -67.95 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.33 Total: 31.74 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 8.27 Total: 21.15 kcal Atomic # 7 Polarization: -129.46 SS G_CDS: -7.58 Total: -137.04 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -1.43 Total: -31.94 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -69.57 1.62 -67.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276811286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.246 kcal (2) G-P(sol) polarization free energy of solvation -69.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds