Wall clock time and date at job start Tue Mar 31 2020 19:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47227 * 2 1 4 4 C 1.50704 * 109.47391 * 119.99912 * 2 1 3 5 5 N 1.32165 * 120.53582 * 305.52397 * 4 2 1 6 6 C 1.31856 * 120.96592 * 180.31341 * 5 4 2 7 7 N 1.31879 * 122.09748 * 359.65148 * 6 5 4 8 8 C 1.32137 * 120.96599 * 0.02562 * 7 6 5 9 9 C 1.39928 * 120.54351 * 125.21234 * 4 2 1 10 10 C 1.47835 * 120.93472 * 0.02562 * 9 4 2 11 11 O 1.21556 * 120.00172 * 52.86022 * 10 9 4 12 12 N 1.34777 * 119.99999 * 232.86144 * 10 9 4 13 13 C 1.47154 * 120.97987 * 355.83654 * 12 10 9 14 14 C 1.53301 * 108.41468 * 129.42445 * 13 12 10 15 15 O 1.43041 * 109.17887 * 52.28804 * 14 13 12 16 16 C 1.42969 * 114.18316 * 297.43845 * 15 14 13 17 17 H 1.09003 * 109.55394 * 302.63070 * 16 15 14 18 18 C 1.53001 * 109.51080 * 182.50845 * 16 15 14 19 19 N 1.46504 * 109.47180 * 65.25127 * 18 16 15 20 20 C 1.36941 * 120.00116 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99535 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99959 * 180.02562 * 20 19 18 23 23 N 1.31620 * 120.00156 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99775 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47212 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47233 * 119.99910 * 24 22 20 27 27 H 1.48505 * 109.47131 * 240.00158 * 24 22 20 28 28 C 1.47154 * 120.98288 * 175.81346 * 12 10 9 29 29 H 1.09006 * 109.47355 * 299.99969 * 1 2 3 30 30 H 1.09002 * 109.47355 * 60.00040 * 1 2 3 31 31 H 1.09003 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47462 * 239.99866 * 2 1 3 33 33 H 1.08995 * 109.47230 * 299.99627 * 3 2 1 34 34 H 1.09006 * 109.47396 * 60.00020 * 3 2 1 35 35 H 1.09000 * 109.47480 * 179.97438 * 3 2 1 36 36 H 1.07998 * 118.95118 * 179.67917 * 6 5 4 37 37 H 1.07995 * 120.53751 * 179.97438 * 8 7 6 38 38 H 1.08996 * 109.68019 * 249.16513 * 13 12 10 39 39 H 1.08998 * 109.68285 * 9.68414 * 13 12 10 40 40 H 1.08994 * 109.51075 * 172.24338 * 14 13 12 41 41 H 1.08997 * 109.51358 * 292.39569 * 14 13 12 42 42 H 1.09000 * 109.47321 * 185.24882 * 18 16 15 43 43 H 1.08997 * 109.47357 * 305.25405 * 18 16 15 44 44 H 0.96999 * 120.00144 * 0.02562 * 19 18 16 45 45 H 0.96998 * 120.00002 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.68309 * 350.27994 * 28 12 10 47 47 H 1.09001 * 109.68130 * 110.79749 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.6326 -0.3348 2.4330 6 6 2.0715 -0.9464 3.5155 7 7 2.9167 -1.9569 3.4555 8 6 3.3632 -2.4018 2.2942 9 6 2.9245 -1.7825 1.1182 10 6 3.3958 -2.2436 -0.2050 11 8 3.8849 -1.4510 -0.9861 12 7 3.2831 -3.5428 -0.5453 13 6 2.7787 -4.5365 0.4158 14 6 1.6643 -5.3427 -0.2611 15 8 2.1438 -5.8516 -1.5089 16 6 2.5032 -4.8411 -2.4543 17 1 1.6461 -4.1937 -2.6399 18 6 2.9396 -5.4993 -3.7647 19 7 1.7989 -6.1957 -4.3650 20 6 1.9509 -6.8625 -5.5514 21 1 2.9118 -6.8754 -6.0443 22 6 0.8700 -7.5218 -6.1204 23 7 -0.3009 -7.5065 -5.5194 24 14 1.0776 -8.4321 -7.7383 25 1 2.4811 -8.2987 -8.2048 26 1 0.7546 -9.8683 -7.5433 27 1 0.1619 -7.8522 -8.7536 28 6 3.6602 -4.0095 -1.8890 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1299 1.4425 0.0005 36 1 1.7275 -0.6093 4.4822 37 1 4.0555 -3.2296 2.2531 38 1 3.5876 -5.2048 0.7113 39 1 2.3824 -4.0287 1.2950 40 1 1.3721 -6.1719 0.3831 41 1 0.8039 -4.6973 -0.4377 42 1 3.3014 -4.7349 -4.4524 43 1 3.7372 -6.2146 -3.5641 44 1 0.9358 -6.1838 -3.9225 45 1 -1.0561 -7.9675 -5.9169 46 1 3.8469 -3.1526 -2.5362 47 1 4.5581 -4.6241 -1.8255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280669394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:07 Heat of formation + Delta-G solvation = -12.409822 kcal Electronic energy + Delta-G solvation = -29486.014917 eV Core-core repulsion = 25476.741715 eV Total energy + Delta-G solvation = -4009.273202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.90052 -40.18467 -38.43895 -36.47666 -35.21278 -34.48985 -33.52731 -32.47365 -31.85077 -30.21723 -28.30839 -27.39761 -26.27071 -25.49199 -24.76291 -23.60384 -22.54042 -21.21884 -21.03347 -19.90305 -18.43761 -17.75074 -17.14820 -17.08578 -16.72814 -16.21092 -15.60340 -15.28729 -15.10400 -14.93084 -14.65605 -14.49885 -14.39460 -14.07288 -13.95308 -13.42647 -13.35117 -13.17915 -12.81239 -12.54936 -12.42342 -12.29556 -12.06445 -11.86032 -11.72450 -11.60548 -11.19545 -11.10262 -10.96400 -10.89014 -10.82706 -10.54922 -10.22592 -10.05790 -9.98380 -9.87621 -9.71839 -9.69636 -8.89533 -8.71265 -6.91921 -5.75110 -3.04075 0.13253 0.55175 2.21655 2.52993 3.24661 3.44391 3.49828 3.52199 3.52731 3.62960 3.81961 3.84616 3.96312 4.43357 4.51752 4.62788 4.69264 4.73793 4.75591 4.84384 4.95040 4.99670 5.01952 5.19774 5.29757 5.32648 5.43186 5.53966 5.57580 5.57881 5.59839 5.61257 5.71659 5.77122 5.83091 5.85742 5.97775 6.04272 6.11665 6.22788 6.42951 6.50578 6.64164 6.96766 7.36331 7.56109 7.70344 7.71756 8.42787 9.54728 10.10995 10.46608 11.47700 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.002658 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.424113 B =10529.727301 C =10986.514829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 C -0.134 4.134 4 C 0.235 3.765 5 N -0.513 5.513 6 C 0.311 3.689 7 N -0.523 5.523 8 C 0.181 3.819 9 C -0.234 4.234 10 C 0.572 3.428 11 O -0.520 6.520 12 N -0.603 5.603 13 C 0.065 3.935 14 C 0.047 3.953 15 O -0.355 6.355 16 C 0.073 3.927 17 H 0.065 0.935 18 C 0.164 3.836 19 N -0.727 5.727 20 C -0.239 4.239 21 H 0.072 0.928 22 C -0.014 4.014 23 N -0.931 5.931 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.086 3.914 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.202 0.798 37 H 0.174 0.826 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.030 0.970 44 H 0.387 0.613 45 H 0.254 0.746 46 H 0.105 0.895 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.102 14.529 19.763 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.192 4.192 4 C 0.089 3.911 5 N -0.226 5.226 6 C 0.024 3.976 7 N -0.237 5.237 8 C 0.014 3.986 9 C -0.241 4.241 10 C 0.358 3.642 11 O -0.397 6.397 12 N -0.336 5.336 13 C -0.058 4.058 14 C -0.031 4.031 15 O -0.273 6.273 16 C 0.014 3.986 17 H 0.083 0.917 18 C 0.035 3.965 19 N -0.371 5.371 20 C -0.370 4.370 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.036 4.036 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.218 0.782 37 H 0.191 0.809 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.221 0.779 45 H 0.064 0.936 46 H 0.123 0.877 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.140 15.001 20.050 25.562 hybrid contribution 0.059 -0.723 -1.179 1.385 sum 5.199 14.278 18.871 24.228 Atomic orbital electron populations 1.21796 0.92755 1.02265 1.03036 1.20399 0.97127 0.97287 0.92904 1.21708 1.01357 0.93517 1.02632 1.21845 0.87208 0.88018 0.94074 1.68303 1.25647 1.30158 0.98479 1.25229 0.87826 0.86812 0.97695 1.68477 1.12778 1.14234 1.28176 1.23490 0.93412 0.95340 0.86332 1.21608 1.04574 1.01562 0.96376 1.17808 0.78717 0.81910 0.85777 1.90822 1.43913 1.53316 1.51601 1.48095 1.64164 1.06737 1.14647 1.22731 0.99016 0.91662 0.92397 1.22909 0.94456 0.98667 0.87077 1.88193 1.84210 1.31696 1.23223 1.22829 0.95671 0.89813 0.90256 0.91743 1.20618 0.92392 0.94999 0.88456 1.42235 1.08138 1.61905 1.24842 1.19264 0.95712 1.24722 0.97328 0.91053 1.24746 0.95713 1.01325 0.99181 1.69682 1.00481 1.47979 1.39857 0.86108 0.77216 0.79381 0.83425 1.20527 1.21863 1.21892 1.22446 0.98661 1.00136 0.82370 0.91318 0.91413 0.92807 0.88259 0.91429 0.91838 0.92378 0.78156 0.80915 0.89589 0.89535 0.87547 0.92813 0.94557 0.95174 0.77922 0.93591 0.87717 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.06 37.15 0.34 -0.97 16 2 C -0.06 -0.61 2.90 -91.77 -0.27 -0.87 16 3 C -0.13 -1.26 9.15 37.16 0.34 -0.92 16 4 C 0.24 2.54 5.52 -81.81 -0.45 2.09 16 5 N -0.51 -5.06 9.99 -10.48 -0.10 -5.17 16 6 C 0.31 2.59 12.27 -92.03 -1.13 1.46 16 7 N -0.52 -4.75 10.42 -14.25 -0.15 -4.90 16 8 C 0.18 1.62 8.77 -16.78 -0.15 1.47 16 9 C -0.23 -2.50 4.92 -104.69 -0.51 -3.02 16 10 C 0.57 7.13 6.39 -12.33 -0.08 7.05 16 11 O -0.52 -7.92 15.04 5.32 0.08 -7.84 16 12 N -0.60 -7.09 3.02 -173.39 -0.52 -7.61 16 13 C 0.07 0.62 5.68 -3.53 -0.02 0.60 16 14 C 0.05 0.56 6.99 37.31 0.26 0.82 16 15 O -0.36 -5.89 10.34 -35.23 -0.36 -6.25 16 16 C 0.07 1.19 2.81 -26.58 -0.07 1.11 16 17 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 18 C 0.16 3.24 5.93 -4.04 -0.02 3.22 16 19 N -0.73 -18.60 5.55 -59.91 -0.33 -18.93 16 20 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 21 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 24 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 C 0.09 1.14 5.91 -3.53 -0.02 1.12 16 29 H 0.07 0.61 7.98 -51.93 -0.41 0.20 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 1.22 5.72 -51.93 -0.30 0.92 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.20 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.17 1.15 7.38 -52.49 -0.39 0.77 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.69 4.91 -51.93 -0.26 0.44 16 40 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.39 10.54 7.67 -40.82 -0.31 10.23 16 45 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.10 1.43 7.11 -51.93 -0.37 1.06 16 47 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -33.95 382.76 -9.04 -42.98 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.08 Total: 6.36 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -2.04 Total: 5.78 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.38 Total: -64.25 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.28 Total: -14.09 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.95 -9.04 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280669394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.575 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds