Wall clock time and date at job start Tue Mar 31 2020 19:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47227 * 2 1 4 4 C 1.50704 * 109.47391 * 119.99912 * 2 1 3 5 5 N 1.32165 * 120.53582 * 305.52397 * 4 2 1 6 6 C 1.31856 * 120.96592 * 180.31341 * 5 4 2 7 7 N 1.31879 * 122.09748 * 359.65148 * 6 5 4 8 8 C 1.32137 * 120.96599 * 0.02562 * 7 6 5 9 9 C 1.39928 * 120.54351 * 125.21234 * 4 2 1 10 10 C 1.47835 * 120.93472 * 0.02562 * 9 4 2 11 11 O 1.21556 * 120.00172 * 52.86022 * 10 9 4 12 12 N 1.34777 * 119.99999 * 232.86144 * 10 9 4 13 13 C 1.47154 * 120.97987 * 355.83654 * 12 10 9 14 14 C 1.53301 * 108.41468 * 129.42445 * 13 12 10 15 15 O 1.43041 * 109.17887 * 52.28804 * 14 13 12 16 16 C 1.42969 * 114.18316 * 297.43845 * 15 14 13 17 17 H 1.09003 * 109.55394 * 302.63070 * 16 15 14 18 18 C 1.53001 * 109.51080 * 182.50845 * 16 15 14 19 19 N 1.46504 * 109.47180 * 65.25127 * 18 16 15 20 20 C 1.36941 * 120.00116 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99535 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99959 * 180.02562 * 20 19 18 23 23 N 1.31620 * 120.00156 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99775 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47212 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47233 * 119.99910 * 24 22 20 27 27 H 1.48505 * 109.47131 * 240.00158 * 24 22 20 28 28 C 1.47154 * 120.98288 * 175.81346 * 12 10 9 29 29 H 1.09006 * 109.47355 * 299.99969 * 1 2 3 30 30 H 1.09002 * 109.47355 * 60.00040 * 1 2 3 31 31 H 1.09003 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47462 * 239.99866 * 2 1 3 33 33 H 1.08995 * 109.47230 * 299.99627 * 3 2 1 34 34 H 1.09006 * 109.47396 * 60.00020 * 3 2 1 35 35 H 1.09000 * 109.47480 * 179.97438 * 3 2 1 36 36 H 1.07998 * 118.95118 * 179.67917 * 6 5 4 37 37 H 1.07995 * 120.53751 * 179.97438 * 8 7 6 38 38 H 1.08996 * 109.68019 * 249.16513 * 13 12 10 39 39 H 1.08998 * 109.68285 * 9.68414 * 13 12 10 40 40 H 1.08994 * 109.51075 * 172.24338 * 14 13 12 41 41 H 1.08997 * 109.51358 * 292.39569 * 14 13 12 42 42 H 1.09000 * 109.47321 * 185.24882 * 18 16 15 43 43 H 1.08997 * 109.47357 * 305.25405 * 18 16 15 44 44 H 0.96999 * 120.00144 * 0.02562 * 19 18 16 45 45 H 0.96998 * 120.00002 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.68309 * 350.27994 * 28 12 10 47 47 H 1.09001 * 109.68130 * 110.79749 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.6326 -0.3348 2.4330 6 6 2.0715 -0.9464 3.5155 7 7 2.9167 -1.9569 3.4555 8 6 3.3632 -2.4018 2.2942 9 6 2.9245 -1.7825 1.1182 10 6 3.3958 -2.2436 -0.2050 11 8 3.8849 -1.4510 -0.9861 12 7 3.2831 -3.5428 -0.5453 13 6 2.7787 -4.5365 0.4158 14 6 1.6643 -5.3427 -0.2611 15 8 2.1438 -5.8516 -1.5089 16 6 2.5032 -4.8411 -2.4543 17 1 1.6461 -4.1937 -2.6399 18 6 2.9396 -5.4993 -3.7647 19 7 1.7989 -6.1957 -4.3650 20 6 1.9509 -6.8625 -5.5514 21 1 2.9118 -6.8754 -6.0443 22 6 0.8700 -7.5218 -6.1204 23 7 -0.3009 -7.5065 -5.5194 24 14 1.0776 -8.4321 -7.7383 25 1 2.4811 -8.2987 -8.2048 26 1 0.7546 -9.8683 -7.5433 27 1 0.1619 -7.8522 -8.7536 28 6 3.6602 -4.0095 -1.8890 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1299 1.4425 0.0005 36 1 1.7275 -0.6093 4.4822 37 1 4.0555 -3.2296 2.2531 38 1 3.5876 -5.2048 0.7113 39 1 2.3824 -4.0287 1.2950 40 1 1.3721 -6.1719 0.3831 41 1 0.8039 -4.6973 -0.4377 42 1 3.3014 -4.7349 -4.4524 43 1 3.7372 -6.2146 -3.5641 44 1 0.9358 -6.1838 -3.9225 45 1 -1.0561 -7.9675 -5.9169 46 1 3.8469 -3.1526 -2.5362 47 1 4.5581 -4.6241 -1.8255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280669394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:06 Heat of formation + Delta-G solvation = -35.450207 kcal Electronic energy + Delta-G solvation = -29487.014024 eV Core-core repulsion = 25476.741715 eV Total energy + Delta-G solvation = -4010.272308 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.67781 -41.16181 -39.54754 -37.26982 -36.67786 -35.86686 -34.35582 -33.87597 -32.88678 -31.77777 -29.44934 -28.15091 -27.62929 -26.24235 -25.87294 -24.90223 -23.96769 -22.42982 -21.97433 -20.85686 -19.32473 -19.11296 -18.58274 -17.88858 -17.76844 -17.30517 -16.79436 -16.57832 -16.13692 -15.88076 -15.83912 -15.59891 -15.42405 -15.12536 -15.04311 -14.64882 -14.44191 -14.35013 -14.16818 -13.98406 -13.48094 -13.15329 -13.06560 -12.87871 -12.81868 -12.67606 -12.59899 -12.38194 -12.28988 -12.03965 -12.03506 -11.88925 -11.70920 -11.58410 -11.25210 -11.08010 -10.97387 -10.69577 -10.41541 -9.74946 -9.00842 -7.94116 -5.23535 -0.59678 -0.17637 1.26835 1.48443 1.49495 1.59448 1.60969 2.53271 2.56498 2.69559 2.81245 2.98308 3.12179 3.16181 3.40244 3.50312 3.67845 3.79006 3.87648 3.93867 3.99220 4.03606 4.06774 4.13280 4.23680 4.35203 4.38241 4.46533 4.53234 4.60431 4.68914 4.71238 4.77637 4.81624 4.85294 4.93535 4.99701 5.06881 5.08752 5.15394 5.21845 5.29444 5.49538 5.70191 6.04132 6.17874 6.27308 6.76103 6.86834 7.33703 8.07329 8.31426 9.29773 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.002658 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.424113 B =10529.727301 C =10986.514829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.061 4.061 3 C -0.128 4.128 4 C 0.227 3.773 5 N -0.522 5.522 6 C 0.314 3.686 7 N -0.528 5.528 8 C 0.191 3.809 9 C -0.250 4.250 10 C 0.575 3.425 11 O -0.554 6.554 12 N -0.602 5.602 13 C 0.072 3.928 14 C 0.040 3.960 15 O -0.384 6.384 16 C 0.087 3.913 17 H 0.047 0.953 18 C 0.160 3.840 19 N -0.741 5.741 20 C -0.244 4.244 21 H 0.079 0.921 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.976 3.024 25 H -0.264 1.264 26 H -0.293 1.293 27 H -0.293 1.293 28 C 0.097 3.903 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.236 0.764 37 H 0.198 0.802 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.034 0.966 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.098 0.902 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.046 14.647 21.452 26.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.080 4.080 3 C -0.186 4.186 4 C 0.080 3.920 5 N -0.235 5.235 6 C 0.029 3.971 7 N -0.242 5.242 8 C 0.023 3.977 9 C -0.257 4.257 10 C 0.363 3.637 11 O -0.433 6.433 12 N -0.335 5.335 13 C -0.050 4.050 14 C -0.037 4.037 15 O -0.303 6.303 16 C 0.028 3.972 17 H 0.065 0.935 18 C 0.033 3.967 19 N -0.384 5.384 20 C -0.376 4.376 21 H 0.097 0.903 22 C -0.269 4.269 23 N -0.620 5.620 24 Si 0.804 3.196 25 H -0.189 1.189 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.026 4.026 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.252 0.748 37 H 0.215 0.785 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.147 0.853 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.116 0.884 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.119 15.131 21.771 27.209 hybrid contribution -0.229 -0.720 -1.594 1.764 sum 5.890 14.411 20.177 25.485 Atomic orbital electron populations 1.21748 0.91935 1.01892 1.03654 1.20370 0.97782 0.97597 0.92253 1.21659 1.00445 0.93089 1.03410 1.21899 0.87427 0.88105 0.94529 1.68362 1.26134 1.30608 0.98430 1.25969 0.86731 0.85957 0.98488 1.68598 1.13095 1.14598 1.27887 1.23852 0.92900 0.95340 0.85558 1.21484 1.05784 1.02514 0.95953 1.18040 0.77963 0.81585 0.86150 1.90800 1.45464 1.54151 1.52848 1.48118 1.63922 1.07092 1.14327 1.22840 0.98932 0.91262 0.91989 1.23177 0.95018 0.99795 0.85708 1.88131 1.84669 1.32550 1.24903 1.22494 0.96105 0.89366 0.89271 0.93461 1.20772 0.90724 0.94869 0.90307 1.42438 1.09150 1.62300 1.24519 1.19696 0.95891 1.23990 0.98025 0.90293 1.25603 0.95562 1.02911 1.02838 1.69842 1.01216 1.49388 1.41589 0.85041 0.77745 0.77577 0.79188 1.18853 1.22047 1.22041 1.22196 0.97674 0.99497 0.83221 0.90718 0.90723 0.93633 0.90492 0.90532 0.91132 0.93666 0.74806 0.78550 0.87245 0.87583 0.85322 0.93649 0.93638 0.94851 0.79401 0.94045 0.88384 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.06 71.98 0.65 -1.79 16 2 C -0.06 -1.27 2.90 -11.54 -0.03 -1.31 16 3 C -0.13 -2.38 9.15 71.98 0.66 -1.72 16 4 C 0.23 4.69 5.52 42.92 0.24 4.93 16 5 N -0.52 -9.38 9.99 -187.06 -1.87 -11.25 16 6 C 0.31 4.38 12.27 180.84 2.22 6.60 16 7 N -0.53 -8.08 10.42 -198.98 -2.07 -10.15 16 8 C 0.19 2.92 8.77 85.06 0.75 3.66 16 9 C -0.25 -5.03 4.92 -19.91 -0.10 -5.13 16 10 C 0.58 14.01 6.39 86.78 0.55 14.56 16 11 O -0.55 -17.07 15.04 -3.89 -0.06 -17.13 16 12 N -0.60 -13.46 3.02 -820.76 -2.48 -15.94 16 13 C 0.07 1.20 5.68 86.36 0.49 1.69 16 14 C 0.04 0.90 6.99 72.08 0.50 1.41 16 15 O -0.38 -12.60 10.34 -148.98 -1.54 -14.14 16 16 C 0.09 2.83 2.81 30.69 0.09 2.91 16 17 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 18 C 0.16 6.38 5.93 86.38 0.51 6.89 16 19 N -0.74 -38.59 5.55 -343.44 -1.91 -40.49 16 20 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 21 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 22 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 23 N -0.97 -60.23 13.06 21.65 0.28 -59.94 16 24 Si 0.98 46.47 29.55 68.60 2.03 48.50 16 25 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 28 C 0.10 2.51 5.91 86.35 0.51 3.02 16 29 H 0.07 1.25 7.98 -2.38 -0.02 1.24 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 1.96 5.72 -2.39 -0.01 1.95 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.24 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.20 1.94 7.38 -2.91 -0.02 1.92 16 38 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.11 1.40 4.91 -2.39 -0.01 1.39 16 40 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 44 H 0.37 21.03 7.67 -92.71 -0.71 20.32 16 45 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 46 H 0.10 2.69 7.11 -2.39 -0.02 2.67 16 47 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -73.98 382.76 1.01 -72.97 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.28 Total: 28.84 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 8.35 Total: 18.74 kcal Atomic # 7 Polarization: -129.74 SS G_CDS: -8.05 Total: -137.78 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.60 Total: -31.27 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -73.98 1.01 -72.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280669394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.519 kcal (2) G-P(sol) polarization free energy of solvation -73.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds