Wall clock time and date at job start Tue Mar 31 2020 18:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.47059 * 2 1 4 4 N 1.31875 * 119.93242 * 87.10967 * 3 2 1 5 5 N 1.28280 * 122.62368 * 179.97438 * 4 3 2 6 6 C 1.32488 * 122.21681 * 0.02562 * 5 4 3 7 7 O 1.35450 * 120.25146 * 179.97438 * 6 5 4 8 8 C 1.40447 * 119.49601 * 359.97438 * 6 5 4 9 9 C 1.47822 * 121.17815 * 179.97438 * 8 6 5 10 10 O 1.21556 * 120.00284 * 90.00658 * 9 8 6 11 11 N 1.34779 * 120.00088 * 269.99796 * 9 8 6 12 12 C 1.46499 * 120.00193 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47185 * 184.86546 * 12 11 9 14 14 N 1.46494 * 115.55313 * 279.54061 * 13 12 11 15 15 C 1.36941 * 120.00293 * 294.69052 * 14 13 12 16 16 H 1.07991 * 119.99766 * 2.68332 * 15 14 13 17 17 C 1.38818 * 119.99841 * 182.69217 * 15 14 13 18 18 N 1.31621 * 119.99386 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99978 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47145 * 90.00285 * 19 17 15 21 21 H 1.48501 * 109.46975 * 210.00112 * 19 17 15 22 22 H 1.48493 * 109.47434 * 329.99705 * 19 17 15 23 23 C 1.53008 * 117.49782 * 133.87457 * 13 12 11 24 24 C 1.53003 * 117.49957 * 65.21528 * 13 12 11 25 25 C 1.38485 * 119.92829 * 266.83509 * 3 2 1 26 26 C 1.50698 * 121.05845 * 0.02562 * 25 3 2 27 27 C 1.52992 * 109.47146 * 268.27792 * 26 25 3 28 28 H 1.08990 * 109.47129 * 64.36657 * 1 2 3 29 29 H 1.09003 * 109.46715 * 184.36438 * 1 2 3 30 30 H 1.09001 * 109.46985 * 304.36531 * 1 2 3 31 31 H 1.08996 * 109.47205 * 239.99960 * 2 1 3 32 32 H 1.09000 * 109.47549 * 119.99987 * 2 1 3 33 33 H 0.96701 * 113.99665 * 89.99939 * 7 6 5 34 34 H 0.96998 * 119.99582 * 0.02562 * 11 9 8 35 35 H 1.08998 * 109.47512 * 304.87086 * 12 11 9 36 36 H 1.09008 * 109.46851 * 64.86549 * 12 11 9 37 37 H 0.97003 * 120.00151 * 114.68436 * 14 13 12 38 38 H 0.97004 * 119.99238 * 179.97438 * 18 17 15 39 39 H 1.09001 * 117.49729 * 359.97438 * 23 13 12 40 40 H 1.08998 * 117.49881 * 145.02395 * 23 13 12 41 41 H 1.08996 * 117.49882 * 214.97634 * 24 13 12 42 42 H 1.09002 * 117.49323 * 359.97438 * 24 13 12 43 43 H 1.08995 * 109.47139 * 28.28192 * 26 25 3 44 44 H 1.09001 * 109.46969 * 148.27750 * 26 25 3 45 45 H 1.09003 * 109.47322 * 174.76996 * 27 26 25 46 46 H 1.08999 * 109.47267 * 294.77156 * 27 26 25 47 47 H 1.08999 * 109.47443 * 54.77003 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.1973 2.0605 1.1414 5 7 2.6220 3.2694 1.2016 6 6 2.9265 3.9660 0.1165 7 8 3.3712 5.2407 0.2263 8 6 2.7845 3.3726 -1.1486 9 6 3.1127 4.1157 -2.3836 10 8 4.2391 4.0711 -2.8386 11 7 2.1632 4.8425 -3.0053 12 6 2.4886 5.5794 -4.2289 13 6 1.2791 6.4111 -4.6604 14 7 0.2351 5.6805 -5.3830 15 6 0.5006 5.1480 -6.6164 16 1 1.4917 5.2291 -7.0375 17 6 -0.5044 4.5042 -7.3253 18 7 -0.2493 3.9929 -8.5110 19 14 -2.2186 4.3636 -6.5966 20 1 -3.0275 5.5405 -7.0035 21 1 -2.8666 3.1225 -7.0916 22 1 -2.1244 4.3157 -5.1154 23 6 1.5292 7.8664 -5.0612 24 6 0.8356 7.5458 -3.7348 25 6 2.3251 2.0502 -1.1983 26 6 2.1495 1.3370 -2.5142 27 6 3.4609 0.6507 -2.9013 28 1 -0.3633 0.4445 -0.9264 29 1 -0.3633 -1.0247 0.0782 30 1 -0.3633 0.5801 0.8483 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 4.3322 5.3167 0.3028 34 1 1.2645 4.8783 -2.6421 35 1 3.3353 6.2396 -4.0412 36 1 2.7458 4.8747 -5.0199 37 1 -0.6443 5.5737 -4.9877 38 1 -0.9514 3.5427 -9.0063 39 1 2.5554 8.2313 -5.0171 40 1 0.9167 8.2802 -5.8622 41 1 -0.2329 7.7489 -3.6638 42 1 1.4054 7.6994 -2.8183 43 1 1.3621 0.5894 -2.4200 44 1 1.8757 2.0580 -3.2845 45 1 3.3088 0.0590 -3.8040 46 1 4.2253 1.4054 -3.0861 47 1 3.7831 -0.0015 -2.0895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323458541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:55 Heat of formation + Delta-G solvation = 11.972191 kcal Electronic energy + Delta-G solvation = -29725.633421 eV Core-core repulsion = 25717.417502 eV Total energy + Delta-G solvation = -4008.215919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.77709 -39.52298 -38.14819 -37.71986 -35.99325 -34.12480 -33.84085 -33.10196 -31.35697 -30.44619 -30.22821 -27.38193 -25.47104 -25.26086 -23.69461 -22.95776 -22.03136 -22.01344 -20.47257 -19.40050 -19.15730 -18.35803 -17.77954 -17.53441 -16.49809 -15.89340 -15.65186 -15.24447 -14.79868 -14.63252 -14.46194 -14.36585 -14.22169 -13.99216 -13.77370 -13.47152 -12.96222 -12.82315 -12.79457 -12.52602 -12.48982 -12.32293 -12.18985 -11.80750 -11.53673 -11.38393 -11.32628 -11.13806 -11.07108 -10.99391 -10.69080 -10.41624 -10.28766 -10.10888 -9.71944 -9.71487 -9.63678 -9.48743 -8.99549 -8.89729 -7.46907 -5.90208 -3.28737 0.24216 0.44650 2.39985 2.84991 3.01618 3.23731 3.24413 3.28135 3.34563 3.77905 4.07006 4.14651 4.32696 4.44877 4.49048 4.59222 4.82717 4.85142 4.88109 4.95324 5.05259 5.06662 5.17501 5.24385 5.29271 5.35697 5.42896 5.43347 5.56293 5.63099 5.70501 5.73777 5.78565 5.89504 5.94162 5.95893 6.02436 6.11657 6.21593 6.30423 6.45293 6.51131 6.62416 6.99771 7.49395 7.84988 8.10815 8.28129 8.35661 9.04422 9.76197 9.93902 11.27323 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010604 B = 0.004127 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.978925 B = 6782.885325 C = 8046.052994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.071 4.071 3 C 0.065 3.935 4 N -0.206 5.206 5 N -0.257 5.257 6 C 0.285 3.715 7 O -0.467 6.467 8 C -0.141 4.141 9 C 0.570 3.430 10 O -0.529 6.529 11 N -0.695 5.695 12 C 0.147 3.853 13 C 0.130 3.870 14 N -0.714 5.714 15 C -0.246 4.246 16 H 0.093 0.907 17 C 0.011 3.989 18 N -0.927 5.927 19 Si 0.882 3.118 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.279 1.279 23 C -0.177 4.177 24 C -0.188 4.188 25 C -0.021 4.021 26 C -0.098 4.098 27 C -0.148 4.148 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.409 0.591 34 H 0.402 0.598 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.365 0.635 38 H 0.261 0.739 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.792 -4.527 17.115 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.080 4.080 4 N -0.050 5.050 5 N -0.108 5.108 6 C 0.099 3.901 7 O -0.273 6.273 8 C -0.156 4.156 9 C 0.353 3.647 10 O -0.406 6.406 11 N -0.344 5.344 12 C 0.022 3.978 13 C 0.036 3.964 14 N -0.356 5.356 15 C -0.375 4.375 16 H 0.111 0.889 17 C -0.185 4.185 18 N -0.574 5.574 19 Si 0.712 3.288 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.217 4.217 24 C -0.226 4.226 25 C -0.032 4.032 26 C -0.136 4.136 27 C -0.205 4.205 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.269 0.731 34 H 0.236 0.764 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.199 0.801 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.045 -4.399 18.086 19.285 hybrid contribution -1.174 0.073 -0.913 1.489 sum 3.870 -4.327 17.173 18.127 Atomic orbital electron populations 1.21760 0.93414 1.02782 1.02759 1.20522 0.97049 0.88931 1.04545 1.22763 0.96961 0.99088 0.89208 1.72808 1.07569 1.00382 1.24288 1.73031 1.10528 1.00937 1.26314 1.20830 0.95094 0.85883 0.88250 1.84704 1.28945 1.18743 1.94943 1.21463 1.02980 0.95409 0.95739 1.17589 0.85441 0.79163 0.82519 1.90826 1.20767 1.63276 1.65715 1.45911 1.13183 1.48138 1.27127 1.21371 0.96140 0.95156 0.85144 1.20036 0.91958 0.86165 0.98228 1.42157 1.09525 1.64663 1.19239 1.18980 0.98126 1.29041 0.91357 0.88881 1.24647 0.97430 1.00264 0.96194 1.69694 1.32906 1.42185 1.12609 0.86612 0.86226 0.77589 0.78366 1.21007 1.21609 1.20502 1.23358 1.00776 1.00077 0.97533 1.23155 1.00971 1.03980 0.94495 1.21197 0.92272 0.91871 0.97881 1.20807 1.00270 1.00552 0.91987 1.21753 0.96074 1.00932 1.01757 0.92194 0.91261 0.91972 0.89166 0.89133 0.73110 0.76415 0.91402 0.89674 0.80078 0.92885 0.89464 0.88291 0.89087 0.89011 0.88905 0.89064 0.90986 0.91411 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.84 37.16 0.37 -0.77 16 2 C -0.07 -0.58 5.60 -27.88 -0.16 -0.73 16 3 C 0.07 0.74 6.11 -82.48 -0.50 0.23 16 4 N -0.21 -2.73 11.40 33.56 0.38 -2.35 16 5 N -0.26 -3.62 11.52 30.73 0.35 -3.27 16 6 C 0.29 3.79 7.88 -16.44 -0.13 3.66 16 7 O -0.47 -5.43 13.09 -18.04 -0.24 -5.66 16 8 C -0.14 -1.90 5.69 -104.45 -0.59 -2.49 16 9 C 0.57 8.66 5.64 -12.34 -0.07 8.59 16 10 O -0.53 -9.43 16.92 5.32 0.09 -9.34 16 11 N -0.70 -10.42 5.51 -61.26 -0.34 -10.76 16 12 C 0.15 2.46 5.73 -4.04 -0.02 2.43 16 13 C 0.13 2.26 2.15 -131.82 -0.28 1.98 16 14 N -0.71 -15.34 5.30 -47.23 -0.25 -15.59 16 15 C -0.25 -6.41 10.04 -15.05 -0.15 -6.56 16 16 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 17 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 18 N -0.93 -27.73 13.97 55.49 0.78 -26.96 16 19 Si 0.88 20.81 27.76 -169.99 -4.72 16.09 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.10 6.48 56.52 0.37 -5.73 16 23 C -0.18 -2.82 10.11 -26.69 -0.27 -3.09 16 24 C -0.19 -2.72 10.14 -26.69 -0.27 -2.99 16 25 C -0.02 -0.25 5.22 -103.84 -0.54 -0.79 16 26 C -0.10 -1.10 5.05 -27.89 -0.14 -1.25 16 27 C -0.15 -1.58 9.77 37.15 0.36 -1.21 16 28 H 0.06 0.48 7.74 -51.93 -0.40 0.08 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.60 6.12 -51.93 -0.32 0.28 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.41 2.97 9.06 45.56 0.41 3.38 16 34 H 0.40 5.68 8.46 -40.82 -0.35 5.34 16 35 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 36 H 0.09 1.67 7.79 -51.92 -0.40 1.27 16 37 H 0.37 7.76 5.87 -40.82 -0.24 7.52 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 40 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.09 0.84 6.21 -51.93 -0.32 0.52 16 44 H 0.09 1.23 7.30 -51.93 -0.38 0.85 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.87 7.96 -51.93 -0.41 0.46 16 47 H 0.06 0.51 7.80 -51.93 -0.41 0.10 16 LS Contribution 394.34 15.07 5.94 5.94 Total: -1.00 -32.51 394.34 -6.70 -39.21 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -6.20 Total: 15.47 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.50 Total: -2.78 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.92 Total: -58.93 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.15 Total: -15.00 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.72 Total: 16.09 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.51 -6.70 -39.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323458541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.180 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds