Wall clock time and date at job start Tue Mar 31 2020 18:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.47059 * 2 1 4 4 N 1.31875 * 119.93242 * 87.10967 * 3 2 1 5 5 N 1.28280 * 122.62368 * 179.97438 * 4 3 2 6 6 C 1.32488 * 122.21681 * 0.02562 * 5 4 3 7 7 O 1.35450 * 120.25146 * 179.97438 * 6 5 4 8 8 C 1.40447 * 119.49601 * 359.97438 * 6 5 4 9 9 C 1.47822 * 121.17815 * 179.97438 * 8 6 5 10 10 O 1.21556 * 120.00284 * 90.00658 * 9 8 6 11 11 N 1.34779 * 120.00088 * 269.99796 * 9 8 6 12 12 C 1.46499 * 120.00193 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47185 * 184.86546 * 12 11 9 14 14 N 1.46494 * 115.55313 * 279.54061 * 13 12 11 15 15 C 1.36941 * 120.00293 * 294.69052 * 14 13 12 16 16 H 1.07991 * 119.99766 * 2.68332 * 15 14 13 17 17 C 1.38818 * 119.99841 * 182.69217 * 15 14 13 18 18 N 1.31621 * 119.99386 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99978 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47145 * 90.00285 * 19 17 15 21 21 H 1.48501 * 109.46975 * 210.00112 * 19 17 15 22 22 H 1.48493 * 109.47434 * 329.99705 * 19 17 15 23 23 C 1.53008 * 117.49782 * 133.87457 * 13 12 11 24 24 C 1.53003 * 117.49957 * 65.21528 * 13 12 11 25 25 C 1.38485 * 119.92829 * 266.83509 * 3 2 1 26 26 C 1.50698 * 121.05845 * 0.02562 * 25 3 2 27 27 C 1.52992 * 109.47146 * 268.27792 * 26 25 3 28 28 H 1.08990 * 109.47129 * 64.36657 * 1 2 3 29 29 H 1.09003 * 109.46715 * 184.36438 * 1 2 3 30 30 H 1.09001 * 109.46985 * 304.36531 * 1 2 3 31 31 H 1.08996 * 109.47205 * 239.99960 * 2 1 3 32 32 H 1.09000 * 109.47549 * 119.99987 * 2 1 3 33 33 H 0.96701 * 113.99665 * 89.99939 * 7 6 5 34 34 H 0.96998 * 119.99582 * 0.02562 * 11 9 8 35 35 H 1.08998 * 109.47512 * 304.87086 * 12 11 9 36 36 H 1.09008 * 109.46851 * 64.86549 * 12 11 9 37 37 H 0.97003 * 120.00151 * 114.68436 * 14 13 12 38 38 H 0.97004 * 119.99238 * 179.97438 * 18 17 15 39 39 H 1.09001 * 117.49729 * 359.97438 * 23 13 12 40 40 H 1.08998 * 117.49881 * 145.02395 * 23 13 12 41 41 H 1.08996 * 117.49882 * 214.97634 * 24 13 12 42 42 H 1.09002 * 117.49323 * 359.97438 * 24 13 12 43 43 H 1.08995 * 109.47139 * 28.28192 * 26 25 3 44 44 H 1.09001 * 109.46969 * 148.27750 * 26 25 3 45 45 H 1.09003 * 109.47322 * 174.76996 * 27 26 25 46 46 H 1.08999 * 109.47267 * 294.77156 * 27 26 25 47 47 H 1.08999 * 109.47443 * 54.77003 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.1973 2.0605 1.1414 5 7 2.6220 3.2694 1.2016 6 6 2.9265 3.9660 0.1165 7 8 3.3712 5.2407 0.2263 8 6 2.7845 3.3726 -1.1486 9 6 3.1127 4.1157 -2.3836 10 8 4.2391 4.0711 -2.8386 11 7 2.1632 4.8425 -3.0053 12 6 2.4886 5.5794 -4.2289 13 6 1.2791 6.4111 -4.6604 14 7 0.2351 5.6805 -5.3830 15 6 0.5006 5.1480 -6.6164 16 1 1.4917 5.2291 -7.0375 17 6 -0.5044 4.5042 -7.3253 18 7 -0.2493 3.9929 -8.5110 19 14 -2.2186 4.3636 -6.5966 20 1 -3.0275 5.5405 -7.0035 21 1 -2.8666 3.1225 -7.0916 22 1 -2.1244 4.3157 -5.1154 23 6 1.5292 7.8664 -5.0612 24 6 0.8356 7.5458 -3.7348 25 6 2.3251 2.0502 -1.1983 26 6 2.1495 1.3370 -2.5142 27 6 3.4609 0.6507 -2.9013 28 1 -0.3633 0.4445 -0.9264 29 1 -0.3633 -1.0247 0.0782 30 1 -0.3633 0.5801 0.8483 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 4.3322 5.3167 0.3028 34 1 1.2645 4.8783 -2.6421 35 1 3.3353 6.2396 -4.0412 36 1 2.7458 4.8747 -5.0199 37 1 -0.6443 5.5737 -4.9877 38 1 -0.9514 3.5427 -9.0063 39 1 2.5554 8.2313 -5.0171 40 1 0.9167 8.2802 -5.8622 41 1 -0.2329 7.7489 -3.6638 42 1 1.4054 7.6994 -2.8183 43 1 1.3621 0.5894 -2.4200 44 1 1.8757 2.0580 -3.2845 45 1 3.3088 0.0590 -3.8040 46 1 4.2253 1.4054 -3.0861 47 1 3.7831 -0.0015 -2.0895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323458541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:54 Heat of formation + Delta-G solvation = -14.696751 kcal Electronic energy + Delta-G solvation = -29726.789873 eV Core-core repulsion = 25717.417502 eV Total energy + Delta-G solvation = -4009.372371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.76893 -40.77063 -39.18819 -38.98216 -36.91949 -35.47633 -34.95940 -34.67030 -32.36751 -32.31282 -31.07084 -28.62899 -26.53625 -26.12679 -25.62944 -23.85837 -23.23348 -22.94165 -21.63701 -20.82904 -20.10336 -19.73980 -19.36276 -18.72470 -17.61193 -17.13763 -16.87082 -16.31662 -16.19157 -15.87957 -15.60908 -15.47066 -15.30913 -15.12179 -14.76141 -14.66039 -14.56937 -14.18449 -13.75704 -13.68434 -13.64313 -13.38280 -13.09507 -12.95835 -12.93878 -12.66700 -12.37417 -12.32476 -12.22386 -11.99320 -11.91998 -11.85785 -11.79196 -11.69385 -11.13857 -11.05194 -10.78915 -10.62262 -10.54139 -10.23479 -9.35665 -8.01626 -5.37412 -0.76579 -0.48427 1.19167 1.36138 1.40403 1.47067 1.79256 1.97927 2.27140 2.47158 2.85343 2.92803 3.14232 3.25335 3.29603 3.35636 3.46477 3.68898 3.73434 3.95819 4.09796 4.13277 4.16431 4.21831 4.30680 4.36433 4.41544 4.51502 4.64003 4.66222 4.76315 4.80647 4.89445 4.91688 4.97597 4.99267 5.04266 5.11547 5.15717 5.18445 5.23656 5.35120 5.39043 5.79357 6.21055 6.24036 6.27206 6.88894 7.06317 7.38530 7.80044 7.98995 9.19518 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010604 B = 0.004127 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.978925 B = 6782.885325 C = 8046.052994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.072 4.072 3 C 0.073 3.927 4 N -0.220 5.220 5 N -0.276 5.276 6 C 0.289 3.711 7 O -0.472 6.472 8 C -0.154 4.154 9 C 0.577 3.423 10 O -0.559 6.559 11 N -0.689 5.689 12 C 0.160 3.840 13 C 0.099 3.901 14 N -0.715 5.715 15 C -0.221 4.221 16 H 0.056 0.944 17 C -0.058 4.058 18 N -0.981 5.981 19 Si 0.951 3.049 20 H -0.283 1.283 21 H -0.298 1.298 22 H -0.249 1.249 23 C -0.179 4.179 24 C -0.152 4.152 25 C -0.017 4.017 26 C -0.097 4.097 27 C -0.145 4.145 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.426 0.574 34 H 0.408 0.592 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.369 0.631 38 H 0.257 0.743 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.038 0.962 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.718 -4.757 19.700 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.074 4.074 4 N -0.063 5.063 5 N -0.127 5.127 6 C 0.102 3.898 7 O -0.281 6.281 8 C -0.169 4.169 9 C 0.361 3.639 10 O -0.438 6.438 11 N -0.337 5.337 12 C 0.034 3.966 13 C 0.008 3.992 14 N -0.357 5.357 15 C -0.352 4.352 16 H 0.074 0.926 17 C -0.249 4.249 18 N -0.632 5.632 19 Si 0.779 3.221 20 H -0.210 1.210 21 H -0.225 1.225 22 H -0.173 1.173 23 C -0.219 4.219 24 C -0.189 4.189 25 C -0.029 4.029 26 C -0.135 4.135 27 C -0.202 4.202 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.289 0.711 34 H 0.243 0.757 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.204 0.796 38 H 0.066 0.934 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.058 0.942 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.993 -4.582 20.753 21.624 hybrid contribution -0.712 0.178 -1.711 1.862 sum 3.281 -4.404 19.042 19.818 Atomic orbital electron populations 1.21765 0.92869 1.03911 1.02017 1.20708 0.97352 0.86880 1.06096 1.23208 0.95759 1.00260 0.88124 1.72760 1.08007 1.00323 1.25256 1.73001 1.11438 1.01560 1.26696 1.20811 0.94898 0.86214 0.87874 1.84657 1.30621 1.17968 1.94861 1.21353 1.04556 0.96111 0.94901 1.17765 0.84809 0.78586 0.82696 1.90808 1.22059 1.64209 1.66735 1.45818 1.13519 1.47946 1.26438 1.21074 0.96335 0.94385 0.84764 1.20249 0.91843 0.86638 1.00518 1.42019 1.10717 1.65036 1.17959 1.18849 0.96284 1.27406 0.92649 0.92600 1.25410 1.01831 1.00941 0.96732 1.69883 1.34164 1.44401 1.14707 0.85483 0.80609 0.76845 0.79210 1.20957 1.22543 1.17300 1.23386 1.02044 0.98064 0.98367 1.23235 1.01764 0.99522 0.94414 1.21372 0.91511 0.91359 0.98617 1.20848 1.01362 1.00554 0.90719 1.21732 0.94941 1.00469 1.03045 0.92637 0.89154 0.93092 0.87305 0.87911 0.71117 0.75651 0.90175 0.93542 0.79634 0.93404 0.87510 0.89792 0.88179 0.86510 0.86174 0.91656 0.90167 0.94232 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.84 71.98 0.71 -1.13 16 2 C -0.07 -0.94 5.60 29.85 0.17 -0.77 16 3 C 0.07 1.50 6.11 42.61 0.26 1.76 16 4 N -0.22 -5.50 11.40 -47.72 -0.54 -6.04 16 5 N -0.28 -7.47 11.52 -169.57 -1.95 -9.43 16 6 C 0.29 7.36 7.88 85.13 0.67 8.03 16 7 O -0.47 -10.32 13.09 -87.47 -1.14 -11.47 16 8 C -0.15 -4.03 5.69 -19.76 -0.11 -4.15 16 9 C 0.58 17.39 5.64 86.78 0.49 17.88 16 10 O -0.56 -20.21 16.92 -3.89 -0.07 -20.27 16 11 N -0.69 -20.19 5.51 -465.99 -2.57 -22.75 16 12 C 0.16 5.33 5.73 86.38 0.49 5.82 16 13 C 0.10 3.35 2.15 3.61 0.01 3.36 16 14 N -0.72 -30.20 5.30 -303.34 -1.61 -31.81 16 15 C -0.22 -11.79 10.04 84.03 0.84 -10.95 16 16 H 0.06 3.35 8.06 -2.92 -0.02 3.33 16 17 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 18 N -0.98 -60.77 13.97 21.65 0.30 -60.47 16 19 Si 0.95 42.94 27.76 68.60 1.90 44.84 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 22 H -0.25 -9.83 6.48 99.48 0.64 -9.19 16 23 C -0.18 -5.36 10.11 30.62 0.31 -5.05 16 24 C -0.15 -3.90 10.14 30.62 0.31 -3.59 16 25 C -0.02 -0.39 5.22 -19.36 -0.10 -0.49 16 26 C -0.10 -2.05 5.05 29.84 0.15 -1.90 16 27 C -0.14 -2.93 9.77 71.98 0.70 -2.22 16 28 H 0.05 0.74 7.74 -2.39 -0.02 0.72 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 1.04 6.12 -2.39 -0.01 1.03 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.43 5.67 9.06 -74.06 -0.67 4.99 16 34 H 0.41 10.94 8.46 -92.71 -0.78 10.16 16 35 H 0.08 2.47 7.94 -2.39 -0.02 2.45 16 36 H 0.05 1.91 7.79 -2.38 -0.02 1.89 16 37 H 0.37 14.91 5.87 -92.71 -0.54 14.36 16 38 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.11 2.78 8.08 -2.39 -0.02 2.76 16 40 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.12 1.86 6.21 -2.39 -0.01 1.84 16 44 H 0.06 1.75 7.30 -2.39 -0.02 1.73 16 45 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.04 1.02 7.96 -2.39 -0.02 1.00 16 47 H 0.08 1.23 7.80 -2.39 -0.02 1.21 16 Total: -1.00 -72.81 394.34 -1.34 -74.15 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: -1.03 Total: 39.41 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 5.37 Total: 3.85 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -6.37 Total: -130.50 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -1.21 Total: -31.74 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.90 Total: 44.84 kcal Total: -72.81 -1.34 -74.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323458541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.449 kcal (2) G-P(sol) polarization free energy of solvation -72.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds