Wall clock time and date at job start Tue Mar 31 2020 18:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.47214 * 2 1 4 4 C 1.35311 * 126.12636 * 84.99736 * 3 2 1 5 5 C 1.39873 * 107.92032 * 179.97438 * 4 3 2 6 6 C 1.50692 * 125.90103 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.47232 * 94.99586 * 6 5 4 8 8 C 1.34778 * 120.00065 * 180.02562 * 7 6 5 9 9 O 1.21354 * 120.00047 * 0.02562 * 8 7 6 10 10 C 1.49444 * 120.00286 * 180.02562 * 8 7 6 11 11 O 1.21351 * 119.99956 * 353.21071 * 10 8 7 12 12 N 1.34772 * 120.00567 * 173.21722 * 10 8 7 13 13 C 1.46931 * 120.63029 * 1.98744 * 12 10 8 14 14 C 1.52758 * 109.01190 * 233.58940 * 13 12 10 15 15 C 1.53042 * 109.38225 * 305.58939 * 14 13 12 16 16 C 1.50697 * 109.44522 * 181.25267 * 15 14 13 17 17 H 1.07997 * 120.00153 * 245.78662 * 16 15 14 18 18 C 1.37884 * 120.00225 * 65.79349 * 16 15 14 19 19 N 1.31513 * 119.99592 * 355.45989 * 18 16 15 20 20 Si 1.86798 * 120.00298 * 175.46003 * 18 16 15 21 21 H 1.48506 * 109.46800 * 94.99465 * 20 18 16 22 22 H 1.48494 * 109.47195 * 214.99559 * 20 18 16 23 23 H 1.48502 * 109.47173 * 335.00101 * 20 18 16 24 24 C 1.53041 * 109.53803 * 61.24010 * 15 14 13 25 25 C 1.46924 * 120.63531 * 182.27648 * 12 10 8 26 26 N 1.30835 * 108.19999 * 359.97438 * 5 4 3 27 27 N 1.34945 * 126.12342 * 264.68989 * 3 2 1 28 28 H 0.97002 * 126.03913 * 0.02796 * 27 3 2 29 29 H 1.09004 * 109.46537 * 60.00174 * 1 2 3 30 30 H 1.08996 * 109.47362 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47139 * 300.00307 * 1 2 3 32 32 H 1.09004 * 109.46999 * 119.99559 * 2 1 3 33 33 H 1.08994 * 109.47048 * 239.99888 * 2 1 3 34 34 H 1.07999 * 126.03890 * 359.94282 * 4 3 2 35 35 H 1.08998 * 109.47632 * 214.99708 * 6 5 4 36 36 H 1.09007 * 109.47185 * 334.99958 * 6 5 4 37 37 H 0.97001 * 120.00148 * 0.02562 * 7 6 5 38 38 H 1.09000 * 109.58099 * 353.42459 * 13 12 10 39 39 H 1.08998 * 109.58705 * 113.84505 * 13 12 10 40 40 H 1.08998 * 109.56236 * 185.54785 * 14 13 12 41 41 H 1.09001 * 109.35944 * 65.49731 * 14 13 12 42 42 H 1.08993 * 109.45751 * 301.21879 * 15 14 13 43 43 H 0.97001 * 119.99720 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.49247 * 178.68090 * 24 15 14 45 45 H 1.08999 * 109.52518 * 58.60318 * 24 15 14 46 46 H 1.09003 * 109.58922 * 246.15468 * 25 12 10 47 47 H 1.09005 * 109.58715 * 6.43661 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2085 2.2047 1.0888 5 6 2.6879 3.4446 0.6535 6 6 3.0219 4.6213 1.5335 7 7 4.4539 4.6091 1.8426 8 6 4.9835 5.5734 2.6212 9 8 4.2741 6.4515 3.0666 10 6 6.4443 5.5613 2.9360 11 8 7.1307 4.6202 2.5955 12 7 6.9996 6.5954 3.5983 13 6 6.1741 7.7216 4.0554 14 6 6.7764 9.0246 3.5329 15 6 8.2453 9.1099 3.9540 16 6 8.8326 10.4089 3.4656 17 1 9.6116 10.4020 2.7177 18 6 8.3754 11.6064 3.9737 19 7 7.3668 11.6204 4.8175 20 14 9.1887 13.2088 3.4636 21 1 8.4358 13.8079 2.3324 22 1 9.1898 14.1508 4.6115 23 1 10.5871 12.9416 3.0411 24 6 9.0209 7.9391 3.3460 25 6 8.4431 6.6212 3.8713 26 7 2.7963 3.4061 -0.6498 27 7 2.3927 2.1373 -1.0853 28 1 2.3739 1.8288 -2.0048 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 2.0129 1.9231 2.1129 35 1 2.7701 5.5462 1.0147 36 1 2.4499 4.5567 2.4592 37 1 5.0209 3.9070 1.4870 38 1 5.1597 7.6101 3.6723 39 1 6.1551 7.7422 5.1450 40 1 6.2293 9.8715 3.9470 41 1 6.7082 9.0435 2.4452 42 1 8.3144 9.0659 5.0409 43 1 7.0449 12.4629 5.1747 44 1 10.0714 8.0136 3.6271 45 1 8.9320 7.9680 2.2600 46 1 8.6131 6.5502 4.9457 47 1 8.9251 5.7825 3.3689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324565611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:45 Heat of formation + Delta-G solvation = 9.263908 kcal Electronic energy + Delta-G solvation = -28220.889618 eV Core-core repulsion = 24212.556259 eV Total energy + Delta-G solvation = -4008.333359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.74629 -40.59574 -38.46491 -36.97722 -35.55952 -34.37381 -33.37363 -31.83111 -31.17119 -30.04442 -29.47923 -27.80281 -26.32678 -24.34472 -24.13872 -22.39074 -21.98560 -20.84079 -20.64558 -20.08669 -18.80430 -17.84200 -17.21369 -16.80618 -16.31688 -15.82321 -15.71320 -15.15134 -14.95434 -14.73567 -14.56798 -14.47073 -14.13130 -13.85715 -13.72807 -13.08728 -13.04049 -12.96826 -12.84094 -12.81082 -12.61484 -12.25771 -12.02216 -11.69829 -11.67554 -11.38486 -10.98272 -10.91339 -10.80401 -10.54857 -10.31508 -10.07454 -9.92217 -9.64879 -9.33359 -9.16391 -9.09201 -9.02610 -8.52388 -8.25984 -8.02888 -5.97472 -4.02584 1.38231 1.65978 2.06923 2.39958 2.81917 3.32163 3.39457 3.42931 3.47030 3.87511 4.01106 4.20849 4.38932 4.46062 4.58642 4.67870 4.76168 5.03263 5.16190 5.26967 5.29915 5.33170 5.38313 5.44828 5.61147 5.68357 5.77392 5.85853 5.92534 6.08814 6.14730 6.17589 6.29230 6.51533 6.65782 6.78533 6.84603 6.85808 7.02410 7.15334 7.20933 7.25001 7.35215 7.71295 7.83490 7.93918 8.00979 8.10114 8.29680 8.46527 9.01107 9.61848 11.09048 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025928 B = 0.002032 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.671041 B =13775.314256 C =14144.248819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C 0.089 3.911 4 C -0.252 4.252 5 C 0.059 3.941 6 C 0.200 3.800 7 N -0.698 5.698 8 C 0.514 3.486 9 O -0.501 6.501 10 C 0.501 3.499 11 O -0.546 6.546 12 N -0.558 5.558 13 C 0.043 3.957 14 C -0.118 4.118 15 C 0.045 3.955 16 C -0.513 4.513 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.123 4.123 25 C 0.106 3.894 26 N -0.270 5.270 27 N -0.469 5.469 28 H 0.438 0.562 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.151 0.849 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.414 0.586 38 H 0.143 0.857 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.036 0.964 42 H 0.030 0.970 43 H 0.260 0.740 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.837 -23.508 -7.845 28.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 C -0.040 4.040 4 C -0.282 4.282 5 C -0.107 4.107 6 C 0.076 3.924 7 N -0.352 5.352 8 C 0.296 3.704 9 O -0.377 6.377 10 C 0.282 3.718 11 O -0.426 6.426 12 N -0.289 5.289 13 C -0.077 4.077 14 C -0.156 4.156 15 C 0.027 3.973 16 C -0.552 4.552 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.209 1.209 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.161 4.161 25 C -0.015 4.015 26 N -0.094 5.094 27 N -0.178 5.178 28 H 0.283 0.717 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.169 0.831 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.250 0.750 38 H 0.159 0.841 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.767 -22.551 -8.594 27.784 hybrid contribution 0.499 0.108 -0.221 0.556 sum -13.268 -22.443 -8.815 27.521 Atomic orbital electron populations 1.21763 0.93711 1.02413 1.02744 1.20256 0.96703 0.89073 1.04192 1.21152 0.99488 0.95614 0.87726 1.21177 1.13592 0.93774 0.99628 1.22145 1.00666 0.96239 0.91687 1.19606 0.81267 0.94351 0.97209 1.45719 1.09526 1.29190 1.50784 1.20400 0.89359 0.81604 0.78988 1.90384 1.61849 1.34139 1.51312 1.19770 0.87719 0.83811 0.80455 1.90698 1.63031 1.34657 1.54177 1.48239 1.09639 1.19463 1.51593 1.23456 0.98610 0.85903 0.99715 1.21882 0.99900 0.94981 0.98860 1.18701 0.91001 0.91516 0.96131 1.21182 1.20169 0.90717 1.23086 0.92774 1.24969 0.94909 0.98981 0.95111 1.69886 1.25063 1.26269 1.31547 0.86623 0.79898 0.83670 0.78053 1.20860 1.21228 1.19964 1.22018 0.99714 0.94071 1.00262 1.21896 0.78981 1.00120 1.00546 1.77396 1.21065 0.98413 1.12548 1.46349 1.52521 1.10063 1.08869 0.71742 0.92652 0.91619 0.91742 0.88832 0.90561 0.83124 0.89192 0.88619 0.75019 0.84095 0.92197 0.88291 0.94540 0.95179 0.93015 0.91843 0.92954 0.91505 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.90 37.16 0.37 -0.14 16 2 C -0.06 -0.24 6.48 -27.88 -0.18 -0.42 16 3 C 0.09 0.61 6.46 -82.26 -0.53 0.08 16 4 C -0.25 -2.11 10.65 -40.01 -0.43 -2.54 16 5 C 0.06 0.61 6.59 -82.41 -0.54 0.07 16 6 C 0.20 2.15 6.23 -5.20 -0.03 2.11 16 7 N -0.70 -8.85 5.54 -61.91 -0.34 -9.19 16 8 C 0.51 8.15 7.80 -11.59 -0.09 8.06 16 9 O -0.50 -8.70 13.02 5.49 0.07 -8.63 16 10 C 0.50 9.01 7.76 -11.59 -0.09 8.92 16 11 O -0.55 -10.34 15.91 5.50 0.09 -10.25 16 12 N -0.56 -10.66 2.98 -173.54 -0.52 -11.17 16 13 C 0.04 0.87 6.21 -3.93 -0.02 0.84 16 14 C -0.12 -2.77 5.19 -26.83 -0.14 -2.91 16 15 C 0.05 1.11 2.00 -91.73 -0.18 0.92 16 16 C -0.51 -14.03 8.48 -34.44 -0.29 -14.33 16 17 H 0.05 1.47 7.75 -52.49 -0.41 1.07 16 18 C 0.06 1.70 5.36 -17.82 -0.10 1.60 16 19 N -0.89 -25.19 11.57 55.43 0.64 -24.55 16 20 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.12 -2.56 5.30 -26.61 -0.14 -2.70 16 25 C 0.11 1.98 6.43 -3.71 -0.02 1.95 16 26 N -0.27 -2.99 12.70 33.67 0.43 -2.56 16 27 N -0.47 -3.63 7.36 33.48 0.25 -3.38 16 28 H 0.44 2.09 8.96 -182.60 -1.64 0.46 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.41 5.09 7.95 -40.82 -0.32 4.77 16 38 H 0.14 2.80 3.77 -57.01 -0.22 2.59 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.10 2.59 6.34 -51.93 -0.33 2.26 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.08 1.43 7.01 -51.93 -0.36 1.06 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -32.18 384.79 -9.36 -41.55 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -8.33 Total: 4.54 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.43 Total: 1.53 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.46 Total: -50.86 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.16 Total: -18.88 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.18 -9.36 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324565611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.811 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds