Wall clock time and date at job start Tue Mar 31 2020 18:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.47214 * 2 1 4 4 C 1.35311 * 126.12636 * 84.99736 * 3 2 1 5 5 C 1.39873 * 107.92032 * 179.97438 * 4 3 2 6 6 C 1.50692 * 125.90103 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.47232 * 94.99586 * 6 5 4 8 8 C 1.34778 * 120.00065 * 180.02562 * 7 6 5 9 9 O 1.21354 * 120.00047 * 0.02562 * 8 7 6 10 10 C 1.49444 * 120.00286 * 180.02562 * 8 7 6 11 11 O 1.21351 * 119.99956 * 353.21071 * 10 8 7 12 12 N 1.34772 * 120.00567 * 173.21722 * 10 8 7 13 13 C 1.46931 * 120.63029 * 1.98744 * 12 10 8 14 14 C 1.52758 * 109.01190 * 233.58940 * 13 12 10 15 15 C 1.53042 * 109.38225 * 305.58939 * 14 13 12 16 16 C 1.50697 * 109.44522 * 181.25267 * 15 14 13 17 17 H 1.07997 * 120.00153 * 245.78662 * 16 15 14 18 18 C 1.37884 * 120.00225 * 65.79349 * 16 15 14 19 19 N 1.31513 * 119.99592 * 355.45989 * 18 16 15 20 20 Si 1.86798 * 120.00298 * 175.46003 * 18 16 15 21 21 H 1.48506 * 109.46800 * 94.99465 * 20 18 16 22 22 H 1.48494 * 109.47195 * 214.99559 * 20 18 16 23 23 H 1.48502 * 109.47173 * 335.00101 * 20 18 16 24 24 C 1.53041 * 109.53803 * 61.24010 * 15 14 13 25 25 C 1.46924 * 120.63531 * 182.27648 * 12 10 8 26 26 N 1.30835 * 108.19999 * 359.97438 * 5 4 3 27 27 N 1.34945 * 126.12342 * 264.68989 * 3 2 1 28 28 H 0.97002 * 126.03913 * 0.02796 * 27 3 2 29 29 H 1.09004 * 109.46537 * 60.00174 * 1 2 3 30 30 H 1.08996 * 109.47362 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47139 * 300.00307 * 1 2 3 32 32 H 1.09004 * 109.46999 * 119.99559 * 2 1 3 33 33 H 1.08994 * 109.47048 * 239.99888 * 2 1 3 34 34 H 1.07999 * 126.03890 * 359.94282 * 4 3 2 35 35 H 1.08998 * 109.47632 * 214.99708 * 6 5 4 36 36 H 1.09007 * 109.47185 * 334.99958 * 6 5 4 37 37 H 0.97001 * 120.00148 * 0.02562 * 7 6 5 38 38 H 1.09000 * 109.58099 * 353.42459 * 13 12 10 39 39 H 1.08998 * 109.58705 * 113.84505 * 13 12 10 40 40 H 1.08998 * 109.56236 * 185.54785 * 14 13 12 41 41 H 1.09001 * 109.35944 * 65.49731 * 14 13 12 42 42 H 1.08993 * 109.45751 * 301.21879 * 15 14 13 43 43 H 0.97001 * 119.99720 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.49247 * 178.68090 * 24 15 14 45 45 H 1.08999 * 109.52518 * 58.60318 * 24 15 14 46 46 H 1.09003 * 109.58922 * 246.15468 * 25 12 10 47 47 H 1.09005 * 109.58715 * 6.43661 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2085 2.2047 1.0888 5 6 2.6879 3.4446 0.6535 6 6 3.0219 4.6213 1.5335 7 7 4.4539 4.6091 1.8426 8 6 4.9835 5.5734 2.6212 9 8 4.2741 6.4515 3.0666 10 6 6.4443 5.5613 2.9360 11 8 7.1307 4.6202 2.5955 12 7 6.9996 6.5954 3.5983 13 6 6.1741 7.7216 4.0554 14 6 6.7764 9.0246 3.5329 15 6 8.2453 9.1099 3.9540 16 6 8.8326 10.4089 3.4656 17 1 9.6116 10.4020 2.7177 18 6 8.3754 11.6064 3.9737 19 7 7.3668 11.6204 4.8175 20 14 9.1887 13.2088 3.4636 21 1 8.4358 13.8079 2.3324 22 1 9.1898 14.1508 4.6115 23 1 10.5871 12.9416 3.0411 24 6 9.0209 7.9391 3.3460 25 6 8.4431 6.6212 3.8713 26 7 2.7963 3.4061 -0.6498 27 7 2.3927 2.1373 -1.0853 28 1 2.3739 1.8288 -2.0048 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 2.0129 1.9231 2.1129 35 1 2.7701 5.5462 1.0147 36 1 2.4499 4.5567 2.4592 37 1 5.0209 3.9070 1.4870 38 1 5.1597 7.6101 3.6723 39 1 6.1551 7.7422 5.1450 40 1 6.2293 9.8715 3.9470 41 1 6.7082 9.0435 2.4452 42 1 8.3144 9.0659 5.0409 43 1 7.0449 12.4629 5.1747 44 1 10.0714 8.0136 3.6271 45 1 8.9320 7.9680 2.2600 46 1 8.6131 6.5502 4.9457 47 1 8.9251 5.7825 3.3689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324565611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:44 Heat of formation + Delta-G solvation = -12.635667 kcal Electronic energy + Delta-G solvation = -28221.839255 eV Core-core repulsion = 24212.556259 eV Total energy + Delta-G solvation = -4009.282996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.42427 -41.94693 -39.86111 -38.59302 -36.60522 -35.29432 -34.81811 -33.03282 -32.58051 -31.77071 -30.02079 -28.92463 -28.00817 -25.73572 -24.68521 -24.13841 -23.52940 -21.78600 -21.40813 -21.27924 -20.34099 -18.70187 -18.42121 -18.33882 -18.07176 -17.16384 -16.94259 -16.47233 -16.14985 -15.72652 -15.63307 -15.36513 -15.23666 -14.95896 -14.73433 -14.62873 -14.48103 -14.34844 -14.04114 -13.84665 -13.63041 -13.36834 -13.21903 -13.18453 -12.81772 -12.52206 -12.39909 -12.29609 -12.14622 -12.00771 -11.92266 -11.60299 -11.48703 -11.06562 -10.98139 -10.61067 -10.46457 -10.41989 -9.91550 -9.68642 -9.64014 -8.07602 -6.20031 0.30382 0.68017 1.19851 1.41435 1.43043 1.53111 1.74230 1.85785 2.10174 2.44788 2.57862 3.19907 3.26071 3.39207 3.66778 4.00654 4.12347 4.22072 4.28571 4.33794 4.40951 4.45882 4.51231 4.57529 4.61301 4.70440 4.75099 4.77780 4.81882 4.92329 4.94886 5.07879 5.14903 5.21020 5.27389 5.32911 5.38273 5.40047 5.49599 5.54619 5.63695 5.94831 5.98645 6.09644 6.28699 6.34824 6.39272 6.59646 6.66703 6.88944 6.91331 7.47301 8.97360 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025928 B = 0.002032 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.671041 B =13775.314256 C =14144.248819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 C 0.100 3.900 4 C -0.267 4.267 5 C 0.049 3.951 6 C 0.201 3.799 7 N -0.679 5.679 8 C 0.517 3.483 9 O -0.518 6.518 10 C 0.502 3.498 11 O -0.552 6.552 12 N -0.567 5.567 13 C 0.058 3.942 14 C -0.108 4.108 15 C 0.042 3.958 16 C -0.535 4.535 17 H 0.050 0.950 18 C 0.014 3.986 19 N -0.913 5.913 20 Si 0.951 3.049 21 H -0.280 1.280 22 H -0.282 1.282 23 H -0.269 1.269 24 C -0.113 4.113 25 C 0.111 3.889 26 N -0.310 5.310 27 N -0.462 5.462 28 H 0.450 0.550 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.165 0.835 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.417 0.583 38 H 0.151 0.849 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.006 0.994 43 H 0.261 0.739 44 H 0.072 0.928 45 H 0.044 0.956 46 H 0.079 0.921 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.280 -25.536 -8.498 30.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.029 4.029 4 C -0.297 4.297 5 C -0.117 4.117 6 C 0.077 3.923 7 N -0.332 5.332 8 C 0.299 3.701 9 O -0.397 6.397 10 C 0.285 3.715 11 O -0.432 6.432 12 N -0.298 5.298 13 C -0.062 4.062 14 C -0.146 4.146 15 C 0.023 3.977 16 C -0.573 4.573 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.553 5.553 20 Si 0.777 3.223 21 H -0.206 1.206 22 H -0.208 1.208 23 H -0.194 1.194 24 C -0.152 4.152 25 C -0.011 4.011 26 N -0.135 5.135 27 N -0.173 5.173 28 H 0.296 0.704 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.183 0.817 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.254 0.746 38 H 0.167 0.833 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.042 0.958 42 H 0.024 0.976 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.211 -24.619 -9.282 29.904 hybrid contribution 0.595 0.631 -0.091 0.872 sum -13.616 -23.988 -9.373 29.132 Atomic orbital electron populations 1.21751 0.93348 1.03212 1.02145 1.20392 0.96816 0.87039 1.05645 1.21663 0.97723 0.96644 0.86906 1.21432 1.14080 0.93285 1.00876 1.22090 1.01360 0.96649 0.91574 1.19711 0.79850 0.94600 0.98095 1.45665 1.10538 1.27951 1.49051 1.20000 0.88276 0.82174 0.79668 1.90350 1.61709 1.35083 1.52509 1.20093 0.88698 0.83180 0.79554 1.90689 1.63621 1.34771 1.54154 1.48219 1.09731 1.19565 1.52273 1.23236 0.98862 0.84589 0.99533 1.21656 0.99244 0.95984 0.97749 1.18669 0.92067 0.92214 0.94718 1.21540 1.20292 0.92273 1.23166 0.93210 1.25707 0.95423 1.02109 0.95247 1.70009 1.25950 1.26981 1.32316 0.85651 0.79080 0.79832 0.77714 1.20585 1.20760 1.19393 1.21863 0.99893 0.93956 0.99441 1.21854 0.78866 0.98965 1.01371 1.77313 1.22729 1.00361 1.13129 1.46387 1.51828 1.09215 1.09845 0.70384 0.93160 0.90136 0.92465 0.87678 0.88820 0.81726 0.89922 0.87044 0.74592 0.83300 0.92209 0.91203 0.95804 0.97582 0.92989 0.90938 0.93764 0.90290 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.90 71.98 0.71 0.06 16 2 C -0.06 -0.28 6.48 29.85 0.19 -0.09 16 3 C 0.10 1.19 6.46 41.41 0.27 1.45 16 4 C -0.27 -4.03 10.65 21.99 0.23 -3.80 16 5 C 0.05 0.95 6.59 43.10 0.28 1.24 16 6 C 0.20 4.14 6.23 85.63 0.53 4.67 16 7 N -0.68 -16.51 5.54 -468.15 -2.59 -19.10 16 8 C 0.52 15.94 7.80 87.27 0.68 16.62 16 9 O -0.52 -17.71 13.02 -3.26 -0.04 -17.75 16 10 C 0.50 17.52 7.76 87.27 0.68 18.20 16 11 O -0.55 -20.06 15.91 -3.25 -0.05 -20.11 16 12 N -0.57 -21.25 2.98 -821.32 -2.45 -23.70 16 13 C 0.06 2.36 6.21 86.22 0.54 2.89 16 14 C -0.11 -5.20 5.19 30.53 0.16 -5.04 16 15 C 0.04 2.10 2.00 -11.51 -0.02 2.08 16 16 C -0.53 -29.70 8.48 25.60 0.22 -29.48 16 17 H 0.05 2.74 7.75 -2.91 -0.02 2.71 16 18 C 0.01 0.79 5.36 84.66 0.45 1.24 16 19 N -0.91 -52.75 11.57 21.45 0.25 -52.51 16 20 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 C -0.11 -4.72 5.30 30.67 0.16 -4.56 16 25 C 0.11 4.01 6.43 86.36 0.56 4.57 16 26 N -0.31 -6.64 12.70 -47.39 -0.60 -7.25 16 27 N -0.46 -6.49 7.36 -48.00 -0.35 -6.84 16 28 H 0.45 3.62 8.96 -213.32 -1.91 1.71 16 29 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 33 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.11 1.95 8.14 -2.38 -0.02 1.94 16 37 H 0.42 9.75 7.95 -92.71 -0.74 9.01 16 38 H 0.15 5.93 3.77 -82.92 -0.31 5.62 16 39 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.07 3.78 6.34 -2.39 -0.02 3.77 16 41 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 45 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 47 H 0.09 3.17 7.01 -2.38 -0.02 3.15 16 Total: -1.00 -69.04 384.79 -0.11 -69.16 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -1.94 Total: 21.92 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 5.64 Total: 10.05 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -5.75 Total: -109.39 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.09 Total: -37.86 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -69.04 -0.11 -69.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324565611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.520 kcal (2) G-P(sol) polarization free energy of solvation -69.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds