Wall clock time and date at job start Tue Mar 31 2020 17:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47034 * 2 1 4 4 N 1.46495 * 109.45853 * 305.39961 * 3 2 1 5 5 C 1.36933 * 120.00326 * 303.32697 * 4 3 2 6 6 H 1.07997 * 120.00038 * 354.74555 * 5 4 3 7 7 C 1.38818 * 120.00149 * 174.73798 * 5 4 3 8 8 N 1.31616 * 119.99926 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99797 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47221 * 60.00548 * 9 7 5 11 11 H 1.48509 * 109.47089 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47438 * 300.00169 * 9 7 5 13 13 C 1.53047 * 109.45942 * 185.43066 * 3 2 1 14 14 C 1.53189 * 109.31254 * 178.60065 * 13 3 2 15 15 N 1.46937 * 108.76580 * 54.65235 * 14 13 3 16 16 C 1.34775 * 120.62944 * 126.40795 * 15 14 13 17 17 O 1.21609 * 119.99921 * 6.07293 * 16 15 14 18 18 C 1.47389 * 119.99864 * 186.07765 * 16 15 14 19 19 C 1.38206 * 126.46474 * 27.49867 * 18 16 15 20 20 N 1.34256 * 108.39695 * 179.86710 * 19 18 16 21 21 H 0.97002 * 125.39617 * 180.13724 * 20 19 18 22 22 C 1.37785 * 109.21654 * 0.40629 * 20 19 18 23 23 C 1.46812 * 125.84719 * 179.76910 * 22 20 19 24 24 N 1.34776 * 120.00596 * 359.97301 * 23 22 20 25 25 O 1.21688 * 119.99549 * 179.97438 * 23 22 20 26 26 C 1.36350 * 108.30016 * 359.74856 * 22 20 19 27 27 C 1.46925 * 118.73768 * 306.38338 * 15 14 13 28 28 C 1.53042 * 109.46080 * 65.37740 * 3 2 1 29 29 H 1.09003 * 109.47475 * 63.05964 * 1 2 3 30 30 H 1.09007 * 109.47084 * 183.05168 * 1 2 3 31 31 H 1.08998 * 109.47568 * 303.05118 * 1 2 3 32 32 H 1.09004 * 109.47384 * 239.99525 * 2 1 3 33 33 H 1.09005 * 109.47099 * 119.99904 * 2 1 3 34 34 H 0.97003 * 119.99484 * 123.32921 * 4 3 2 35 35 H 0.97001 * 119.99907 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.49198 * 298.56529 * 13 3 2 37 37 H 1.08990 * 109.50004 * 58.66136 * 13 3 2 38 38 H 1.09002 * 109.59899 * 294.86981 * 14 13 3 39 39 H 1.08999 * 109.58845 * 174.43031 * 14 13 3 40 40 H 1.08000 * 125.80375 * 0.02688 * 19 18 16 41 41 H 0.96998 * 119.99325 * 0.02562 * 24 23 22 42 42 H 0.96996 * 120.00442 * 180.02562 * 24 23 22 43 43 H 1.08000 * 126.49363 * 179.97438 * 26 22 20 44 44 H 1.08996 * 109.58858 * 293.82175 * 27 15 14 45 45 H 1.09001 * 109.69694 * 173.46330 * 27 15 14 46 46 H 1.09003 * 109.49263 * 301.33199 * 28 3 2 47 47 H 1.08998 * 109.50049 * 61.43412 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4482 2.1693 -1.1259 5 6 1.6098 1.7025 -2.4031 6 1 2.2430 0.8478 -2.5895 7 6 0.9595 2.3279 -3.4581 8 7 0.1880 3.3697 -3.2309 9 14 1.1794 1.6906 -5.2002 10 1 0.7127 0.2829 -5.2750 11 1 0.3857 2.5262 -6.1368 12 1 2.6151 1.7566 -5.5739 13 6 3.5643 1.4444 -0.1366 14 6 4.0680 2.8906 -0.1714 15 7 3.5680 3.5941 1.0178 16 6 4.4169 4.2424 1.8397 17 8 5.5920 4.3435 1.5433 18 6 3.9211 4.8289 3.0976 19 6 2.8357 4.3945 3.8348 20 7 2.7112 5.1858 4.9122 21 1 2.0302 5.0988 5.5975 22 6 3.7002 6.1448 4.8873 23 6 3.8998 7.2002 5.8882 24 7 3.0722 7.2890 6.9482 25 8 4.8126 7.9948 5.7606 26 6 4.4620 5.9453 3.7742 27 6 2.1250 3.5777 1.2937 28 6 1.6430 2.1236 1.3118 29 1 -0.3634 0.4656 -0.9161 30 1 -0.3633 -1.0263 0.0547 31 1 -0.3634 0.5604 0.8613 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.9419 2.9813 -0.9667 35 1 -0.2667 3.8065 -3.9681 36 1 4.0063 0.9252 0.7139 37 1 3.8475 0.9384 -1.0594 38 1 3.6991 3.3848 -1.0702 39 1 5.1580 2.8981 -0.1689 40 1 2.1979 3.5587 3.5876 41 1 2.3449 6.6554 7.0500 42 1 3.2039 7.9866 7.6092 43 1 5.3167 6.5301 3.4676 44 1 1.5977 4.1277 0.5143 45 1 1.9308 4.0391 2.2619 46 1 0.5586 2.1012 1.4197 47 1 2.1034 1.5981 2.1484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327493031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:06 Heat of formation + Delta-G solvation = -1.692177 kcal Electronic energy + Delta-G solvation = -29717.633166 eV Core-core repulsion = 25708.824716 eV Total energy + Delta-G solvation = -4008.808450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.90202 -39.80728 -39.01805 -37.78436 -34.77158 -34.19463 -32.56303 -31.81609 -31.02644 -30.08243 -29.50388 -28.92859 -25.30648 -24.07640 -23.49414 -22.91499 -22.63969 -20.85217 -20.45750 -19.80672 -18.84807 -17.85956 -17.21784 -17.08302 -16.75856 -15.96495 -15.53157 -15.30197 -14.96333 -14.46411 -14.35835 -14.09276 -14.02035 -13.91253 -13.68285 -13.55855 -13.11622 -13.08183 -12.80688 -12.53037 -12.07606 -11.91628 -11.64530 -11.25756 -11.10199 -10.86402 -10.76854 -10.62940 -10.59534 -10.31668 -10.26952 -10.19663 -9.93935 -9.70608 -9.61199 -9.44739 -9.29338 -8.86840 -8.56111 -8.11720 -6.94645 -5.77983 -3.05826 1.11334 1.82355 2.61784 3.00159 3.02117 3.40030 3.43118 3.48435 3.49438 3.61643 4.50738 4.57555 4.60341 4.78965 4.99061 5.07347 5.27504 5.33841 5.48608 5.57122 5.63663 5.68369 5.75242 5.84312 5.91148 5.99585 6.06414 6.14233 6.17585 6.20749 6.27166 6.31550 6.42824 6.46399 6.53019 6.61955 6.69684 6.80141 6.83041 6.88806 6.94734 6.98046 7.11945 7.21610 7.72082 7.80803 7.84678 8.40913 8.55712 9.52673 10.08615 10.44129 11.44374 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018460 B = 0.002871 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.418413 B = 9749.121048 C =10069.493954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.204 3.796 4 N -0.712 5.712 5 C -0.229 4.229 6 H 0.068 0.932 7 C -0.010 4.010 8 N -0.933 5.933 9 Si 0.900 3.100 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.287 1.287 13 C -0.136 4.136 14 C 0.124 3.876 15 N -0.595 5.595 16 C 0.584 3.416 17 O -0.549 6.549 18 C -0.218 4.218 19 C 0.065 3.935 20 N -0.529 5.529 21 H 0.418 0.582 22 C -0.074 4.074 23 C 0.597 3.403 24 N -0.857 5.857 25 O -0.528 6.528 26 C -0.041 4.041 27 C 0.088 3.912 28 C -0.134 4.134 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.196 0.804 41 H 0.395 0.605 42 H 0.408 0.592 43 H 0.157 0.843 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 0.754 21.009 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.112 3.888 4 N -0.354 5.354 5 C -0.360 4.360 6 H 0.086 0.914 7 C -0.206 4.206 8 N -0.581 5.581 9 Si 0.731 3.269 10 H -0.215 1.215 11 H -0.219 1.219 12 H -0.214 1.214 13 C -0.176 4.176 14 C 0.002 3.998 15 N -0.327 5.327 16 C 0.372 3.628 17 O -0.428 6.428 18 C -0.228 4.228 19 C -0.075 4.075 20 N -0.124 5.124 21 H 0.256 0.744 22 C -0.185 4.185 23 C 0.383 3.617 24 N -0.421 5.421 25 O -0.403 6.403 26 C -0.067 4.067 27 C -0.035 4.035 28 C -0.173 4.173 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.212 0.788 41 H 0.223 0.777 42 H 0.239 0.761 43 H 0.175 0.825 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.096 0.904 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.433 1.211 20.565 20.605 hybrid contribution -0.973 -0.331 -0.437 1.117 sum -0.540 0.880 20.128 20.155 Atomic orbital electron populations 1.21646 0.96016 0.99181 1.02779 1.21863 0.96401 0.97870 0.99922 1.19510 0.90859 0.91096 0.87322 1.42430 1.63159 1.28744 1.01064 1.19026 1.22358 1.10788 0.83802 0.91360 1.24668 0.99836 0.98475 0.97651 1.69628 1.34653 1.22992 1.30822 0.86385 0.77393 0.77870 0.85237 1.21465 1.21914 1.21371 1.22349 0.98457 0.95638 1.01204 1.21562 0.98867 0.92372 0.86987 1.47898 1.07050 1.51932 1.25799 1.17388 0.85305 0.77806 0.82288 1.90753 1.16895 1.59855 1.75320 1.19775 1.00643 1.02711 0.99689 1.22975 0.98980 0.97730 0.87824 1.41727 1.25335 1.24314 1.21057 0.74401 1.19923 0.97960 0.98232 1.02372 1.17039 0.81554 0.82852 0.80276 1.43699 1.34176 1.36962 1.27255 1.90915 1.31690 1.41739 1.76001 1.21117 0.98401 0.95725 0.91446 1.22285 0.80755 0.97838 1.02595 1.22178 1.01348 0.95183 0.98587 0.90398 0.95055 0.94170 0.92197 0.94256 0.78233 0.93595 0.93433 0.90792 0.89699 0.90511 0.78797 0.77745 0.76071 0.82496 0.90291 0.89295 0.90415 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.46 37.15 0.35 -1.92 16 2 C -0.12 -1.98 4.65 -26.74 -0.12 -2.10 16 3 C 0.20 3.42 0.44 -131.78 -0.06 3.37 16 4 N -0.71 -15.11 3.32 -47.19 -0.16 -15.27 16 5 C -0.23 -5.62 8.30 -15.06 -0.12 -5.75 16 6 H 0.07 1.68 6.77 -52.49 -0.36 1.32 16 7 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 8 N -0.93 -26.29 13.06 55.49 0.72 -25.56 16 9 Si 0.90 21.56 29.55 -169.99 -5.02 16.54 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C -0.14 -2.29 4.76 -26.61 -0.13 -2.42 16 14 C 0.12 2.21 6.16 -3.71 -0.02 2.19 16 15 N -0.59 -9.48 2.97 -174.04 -0.52 -10.00 16 16 C 0.58 9.79 7.63 -12.54 -0.10 9.70 16 17 O -0.55 -11.24 16.46 5.27 0.09 -11.15 16 18 C -0.22 -2.89 5.71 -105.02 -0.60 -3.49 16 19 C 0.07 0.57 9.67 -16.50 -0.16 0.41 16 20 N -0.53 -3.44 5.91 -9.30 -0.05 -3.50 16 21 H 0.42 0.90 8.14 -40.82 -0.33 0.56 16 22 C -0.07 -0.75 6.99 -82.40 -0.58 -1.33 16 23 C 0.60 6.02 8.06 -12.79 -0.10 5.92 16 24 N -0.86 -4.22 8.87 30.29 0.27 -3.95 16 25 O -0.53 -7.69 17.70 5.20 0.09 -7.60 16 26 C -0.04 -0.54 10.47 -39.10 -0.41 -0.95 16 27 C 0.09 1.18 5.54 -3.71 -0.02 1.16 16 28 C -0.13 -1.78 4.60 -26.61 -0.12 -1.90 16 29 H 0.08 1.57 7.21 -51.93 -0.37 1.19 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.58 6.41 -51.93 -0.33 0.25 16 32 H 0.06 1.09 7.40 -51.93 -0.38 0.70 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.38 8.81 6.38 -40.82 -0.26 8.55 16 35 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.34 7.40 -51.93 -0.38 0.96 16 38 H 0.08 1.76 7.74 -51.93 -0.40 1.36 16 39 H 0.08 1.41 7.04 -51.93 -0.37 1.05 16 40 H 0.20 1.24 5.91 -52.49 -0.31 0.93 16 41 H 0.40 0.61 7.91 -40.82 -0.32 0.29 16 42 H 0.41 1.57 8.93 -40.82 -0.36 1.20 16 43 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 44 H 0.08 1.26 6.87 -51.93 -0.36 0.91 16 45 H 0.09 0.91 3.16 -51.93 -0.16 0.74 16 46 H 0.08 0.99 6.45 -51.93 -0.34 0.65 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -34.48 369.77 -7.59 -42.07 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.29 Total: 10.34 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -2.29 Total: 2.51 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.26 Total: -58.27 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.18 Total: -18.75 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.48 -7.59 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327493031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.380 kcal (2) G-P(sol) polarization free energy of solvation -34.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds