Wall clock time and date at job start Tue Mar 31 2020 17:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47034 * 2 1 4 4 N 1.46495 * 109.45853 * 305.39961 * 3 2 1 5 5 C 1.36933 * 120.00326 * 303.32697 * 4 3 2 6 6 H 1.07997 * 120.00038 * 354.74555 * 5 4 3 7 7 C 1.38818 * 120.00149 * 174.73798 * 5 4 3 8 8 N 1.31616 * 119.99926 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99797 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47221 * 60.00548 * 9 7 5 11 11 H 1.48509 * 109.47089 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47438 * 300.00169 * 9 7 5 13 13 C 1.53047 * 109.45942 * 185.43066 * 3 2 1 14 14 C 1.53189 * 109.31254 * 178.60065 * 13 3 2 15 15 N 1.46937 * 108.76580 * 54.65235 * 14 13 3 16 16 C 1.34775 * 120.62944 * 126.40795 * 15 14 13 17 17 O 1.21609 * 119.99921 * 6.07293 * 16 15 14 18 18 C 1.47389 * 119.99864 * 186.07765 * 16 15 14 19 19 C 1.38206 * 126.46474 * 27.49867 * 18 16 15 20 20 N 1.34256 * 108.39695 * 179.86710 * 19 18 16 21 21 H 0.97002 * 125.39617 * 180.13724 * 20 19 18 22 22 C 1.37785 * 109.21654 * 0.40629 * 20 19 18 23 23 C 1.46812 * 125.84719 * 179.76910 * 22 20 19 24 24 N 1.34776 * 120.00596 * 359.97301 * 23 22 20 25 25 O 1.21688 * 119.99549 * 179.97438 * 23 22 20 26 26 C 1.36350 * 108.30016 * 359.74856 * 22 20 19 27 27 C 1.46925 * 118.73768 * 306.38338 * 15 14 13 28 28 C 1.53042 * 109.46080 * 65.37740 * 3 2 1 29 29 H 1.09003 * 109.47475 * 63.05964 * 1 2 3 30 30 H 1.09007 * 109.47084 * 183.05168 * 1 2 3 31 31 H 1.08998 * 109.47568 * 303.05118 * 1 2 3 32 32 H 1.09004 * 109.47384 * 239.99525 * 2 1 3 33 33 H 1.09005 * 109.47099 * 119.99904 * 2 1 3 34 34 H 0.97003 * 119.99484 * 123.32921 * 4 3 2 35 35 H 0.97001 * 119.99907 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.49198 * 298.56529 * 13 3 2 37 37 H 1.08990 * 109.50004 * 58.66136 * 13 3 2 38 38 H 1.09002 * 109.59899 * 294.86981 * 14 13 3 39 39 H 1.08999 * 109.58845 * 174.43031 * 14 13 3 40 40 H 1.08000 * 125.80375 * 0.02688 * 19 18 16 41 41 H 0.96998 * 119.99325 * 0.02562 * 24 23 22 42 42 H 0.96996 * 120.00442 * 180.02562 * 24 23 22 43 43 H 1.08000 * 126.49363 * 179.97438 * 26 22 20 44 44 H 1.08996 * 109.58858 * 293.82175 * 27 15 14 45 45 H 1.09001 * 109.69694 * 173.46330 * 27 15 14 46 46 H 1.09003 * 109.49263 * 301.33199 * 28 3 2 47 47 H 1.08998 * 109.50049 * 61.43412 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4482 2.1693 -1.1259 5 6 1.6098 1.7025 -2.4031 6 1 2.2430 0.8478 -2.5895 7 6 0.9595 2.3279 -3.4581 8 7 0.1880 3.3697 -3.2309 9 14 1.1794 1.6906 -5.2002 10 1 0.7127 0.2829 -5.2750 11 1 0.3857 2.5262 -6.1368 12 1 2.6151 1.7566 -5.5739 13 6 3.5643 1.4444 -0.1366 14 6 4.0680 2.8906 -0.1714 15 7 3.5680 3.5941 1.0178 16 6 4.4169 4.2424 1.8397 17 8 5.5920 4.3435 1.5433 18 6 3.9211 4.8289 3.0976 19 6 2.8357 4.3945 3.8348 20 7 2.7112 5.1858 4.9122 21 1 2.0302 5.0988 5.5975 22 6 3.7002 6.1448 4.8873 23 6 3.8998 7.2002 5.8882 24 7 3.0722 7.2890 6.9482 25 8 4.8126 7.9948 5.7606 26 6 4.4620 5.9453 3.7742 27 6 2.1250 3.5777 1.2937 28 6 1.6430 2.1236 1.3118 29 1 -0.3634 0.4656 -0.9161 30 1 -0.3633 -1.0263 0.0547 31 1 -0.3634 0.5604 0.8613 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.9419 2.9813 -0.9667 35 1 -0.2667 3.8065 -3.9681 36 1 4.0063 0.9252 0.7139 37 1 3.8475 0.9384 -1.0594 38 1 3.6991 3.3848 -1.0702 39 1 5.1580 2.8981 -0.1689 40 1 2.1979 3.5587 3.5876 41 1 2.3449 6.6554 7.0500 42 1 3.2039 7.9866 7.6092 43 1 5.3167 6.5301 3.4676 44 1 1.5977 4.1277 0.5143 45 1 1.9308 4.0391 2.2619 46 1 0.5586 2.1012 1.4197 47 1 2.1034 1.5981 2.1484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327493031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:05 Heat of formation + Delta-G solvation = -29.286269 kcal Electronic energy + Delta-G solvation = -29718.829736 eV Core-core repulsion = 25708.824716 eV Total energy + Delta-G solvation = -4010.005020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.75956 -41.02761 -39.91535 -39.15545 -36.20999 -34.89771 -34.36399 -32.89706 -32.06673 -31.46891 -30.81864 -30.20162 -26.66848 -25.66923 -24.62982 -24.09262 -23.73726 -22.05700 -21.29731 -20.79981 -19.89638 -19.17676 -18.86661 -17.91440 -17.81008 -16.93925 -16.63382 -16.51865 -16.25456 -15.92219 -15.60269 -15.40698 -15.30960 -14.97172 -14.90760 -14.65710 -14.42827 -14.34665 -14.12802 -13.84172 -13.42488 -13.23037 -12.94901 -12.79230 -12.70507 -12.49625 -12.23730 -12.15392 -11.99963 -11.72953 -11.51866 -11.41556 -11.37357 -11.00918 -10.83707 -10.79194 -10.70326 -10.20593 -9.57624 -9.32236 -8.78244 -7.81922 -5.04250 0.32733 0.79554 1.49032 1.50861 1.54634 1.90152 2.04900 2.17649 2.45402 2.53644 2.63942 3.52565 3.67024 3.89585 3.91839 3.96392 4.02808 4.06455 4.21601 4.23106 4.36001 4.56424 4.59315 4.65598 4.73033 4.80248 4.83229 4.87682 4.91319 4.99643 5.14394 5.20353 5.24460 5.30738 5.38353 5.45013 5.49985 5.51922 5.62520 5.69199 5.79064 5.79924 5.85633 6.26247 6.42322 6.45570 6.60160 7.18931 7.27358 7.50140 8.29034 8.51169 9.41290 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018460 B = 0.002871 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.418413 B = 9749.121048 C =10069.493954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.117 4.117 3 C 0.194 3.806 4 N -0.715 5.715 5 C -0.201 4.201 6 H 0.067 0.933 7 C -0.072 4.072 8 N -0.966 5.966 9 Si 0.946 3.054 10 H -0.283 1.283 11 H -0.304 1.304 12 H -0.289 1.289 13 C -0.127 4.127 14 C 0.130 3.870 15 N -0.593 5.593 16 C 0.580 3.420 17 O -0.600 6.600 18 C -0.254 4.254 19 C 0.101 3.899 20 N -0.493 5.493 21 H 0.446 0.554 22 C -0.062 4.062 23 C 0.595 3.405 24 N -0.827 5.827 25 O -0.582 6.582 26 C -0.076 4.076 27 C 0.089 3.911 28 C -0.127 4.127 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.374 0.626 35 H 0.244 0.756 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.233 0.767 41 H 0.416 0.584 42 H 0.418 0.582 43 H 0.128 0.872 44 H 0.050 0.950 45 H 0.130 0.870 46 H 0.094 0.906 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 -0.961 25.154 25.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.104 3.896 4 N -0.355 5.355 5 C -0.333 4.333 6 H 0.085 0.915 7 C -0.264 4.264 8 N -0.618 5.618 9 Si 0.778 3.222 10 H -0.209 1.209 11 H -0.231 1.231 12 H -0.216 1.216 13 C -0.168 4.168 14 C 0.007 3.993 15 N -0.324 5.324 16 C 0.371 3.629 17 O -0.483 6.483 18 C -0.263 4.263 19 C -0.042 4.042 20 N -0.090 5.090 21 H 0.290 0.710 22 C -0.174 4.174 23 C 0.381 3.619 24 N -0.391 5.391 25 O -0.461 6.461 26 C -0.103 4.103 27 C -0.032 4.032 28 C -0.165 4.165 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.207 0.793 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.249 0.751 41 H 0.247 0.753 42 H 0.251 0.749 43 H 0.146 0.854 44 H 0.069 0.931 45 H 0.147 0.853 46 H 0.112 0.888 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.694 -0.559 24.809 24.873 hybrid contribution -0.289 0.181 -1.597 1.633 sum -1.982 -0.378 23.212 23.300 Atomic orbital electron populations 1.21558 0.95803 1.00113 1.01495 1.21815 0.96444 0.96956 1.00437 1.19848 0.90188 0.91762 0.87810 1.42550 1.62888 1.28741 1.01312 1.19248 1.19667 1.09133 0.85284 0.91484 1.25188 1.01331 0.99597 1.00285 1.69746 1.36719 1.24667 1.30686 0.85607 0.76766 0.77332 0.82458 1.20940 1.23061 1.21610 1.22261 0.98695 0.94529 1.01266 1.21255 0.98077 0.93184 0.86745 1.47913 1.08166 1.51473 1.24798 1.17947 0.84677 0.76987 0.83283 1.90716 1.19197 1.61659 1.76739 1.19476 1.03449 1.04034 0.99376 1.23219 0.96879 0.97380 0.86695 1.41592 1.24461 1.22140 1.20845 0.71026 1.19703 0.97977 0.98547 1.01195 1.17069 0.81503 0.82196 0.81099 1.43431 1.33190 1.37067 1.25423 1.90901 1.34206 1.43689 1.77343 1.21015 0.99063 0.96686 0.93498 1.22449 0.78612 0.98446 1.03691 1.22184 1.02676 0.94423 0.97254 0.94905 0.93498 0.91733 0.94737 0.90695 0.79276 0.94717 0.90935 0.92822 0.93534 0.91827 0.75081 0.75268 0.74937 0.85447 0.93148 0.85284 0.88752 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 9.46 71.98 0.68 -3.26 16 2 C -0.12 -3.47 4.65 30.59 0.14 -3.33 16 3 C 0.19 6.11 0.44 3.63 0.00 6.11 16 4 N -0.71 -30.33 3.32 -303.22 -1.01 -31.34 16 5 C -0.20 -10.05 8.30 84.04 0.70 -9.35 16 6 H 0.07 3.34 6.77 -2.91 -0.02 3.32 16 7 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 8 N -0.97 -56.23 13.06 21.65 0.28 -55.95 16 9 Si 0.95 45.60 29.55 68.60 2.03 47.63 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 13 C -0.13 -4.16 4.76 30.67 0.15 -4.02 16 14 C 0.13 4.78 6.16 86.36 0.53 5.31 16 15 N -0.59 -18.50 2.97 -822.80 -2.45 -20.94 16 16 C 0.58 19.52 7.63 86.65 0.66 20.18 16 17 O -0.60 -25.81 16.46 -4.06 -0.07 -25.88 16 18 C -0.25 -6.33 5.71 -20.12 -0.11 -6.45 16 19 C 0.10 1.27 9.67 84.31 0.82 2.09 16 20 N -0.49 -3.91 5.91 -183.35 -1.08 -5.00 16 21 H 0.45 -1.12 8.14 -92.71 -0.75 -1.88 16 22 C -0.06 -1.12 6.99 40.01 0.28 -0.84 16 23 C 0.60 10.88 8.06 86.49 0.70 11.58 16 24 N -0.83 -5.12 8.87 -176.29 -1.56 -6.68 16 25 O -0.58 -17.00 17.70 -4.31 -0.08 -17.07 16 26 C -0.08 -2.03 10.47 22.58 0.24 -1.79 16 27 C 0.09 2.16 5.54 86.36 0.48 2.64 16 28 C -0.13 -2.80 4.60 30.67 0.14 -2.65 16 29 H 0.03 1.27 7.21 -2.39 -0.02 1.25 16 30 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.06 1.59 6.41 -2.39 -0.02 1.57 16 32 H 0.03 1.19 7.40 -2.39 -0.02 1.17 16 33 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.37 17.34 6.38 -92.71 -0.59 16.75 16 35 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 1.96 7.40 -2.39 -0.02 1.94 16 38 H 0.05 2.04 7.74 -2.39 -0.02 2.03 16 39 H 0.06 2.47 7.04 -2.39 -0.02 2.46 16 40 H 0.23 1.21 5.91 -2.91 -0.02 1.19 16 41 H 0.42 -0.87 7.91 -92.71 -0.73 -1.60 16 42 H 0.42 1.82 8.93 -92.71 -0.83 0.99 16 43 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 44 H 0.05 1.56 6.87 -2.39 -0.02 1.54 16 45 H 0.13 2.01 3.16 -2.39 -0.01 2.00 16 46 H 0.09 1.87 6.45 -2.39 -0.02 1.85 16 47 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -84.01 369.77 0.09 -83.92 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -1.84 Total: 18.56 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 5.86 Total: 12.76 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -5.82 Total: -119.91 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.14 Total: -42.96 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -84.01 0.09 -83.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327493031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.630 kcal (2) G-P(sol) polarization free energy of solvation -84.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds