Wall clock time and date at job start Tue Mar 31 2020 17:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47391 * 2 1 4 4 C 1.38624 * 120.75751 * 269.97650 * 3 2 1 5 5 C 1.38553 * 119.35610 * 180.02562 * 4 3 2 6 6 N 1.31528 * 120.90309 * 0.02562 * 5 4 3 7 7 C 1.32716 * 121.63676 * 359.68372 * 6 5 4 8 8 C 1.48172 * 119.72308 * 180.29170 * 7 6 5 9 9 O 1.21505 * 120.00586 * 173.07758 * 8 7 6 10 10 N 1.34780 * 119.99617 * 353.07467 * 8 7 6 11 11 C 1.46505 * 120.00312 * 2.04037 * 10 8 7 12 12 C 1.46502 * 120.00109 * 182.04166 * 10 8 7 13 13 C 1.53004 * 109.47193 * 89.99750 * 12 10 8 14 14 N 1.46897 * 109.47397 * 180.02562 * 13 12 10 15 15 C 1.46897 * 111.00129 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46868 * 179.97438 * 15 14 13 17 17 O 1.21288 * 120.00002 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99628 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99741 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00483 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00016 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99982 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00097 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47165 * 90.00369 * 23 21 19 25 25 H 1.48503 * 109.47135 * 210.00343 * 23 21 19 26 26 H 1.48501 * 109.47152 * 330.00196 * 23 21 19 27 27 C 1.38589 * 120.75360 * 90.00054 * 3 2 1 28 28 H 1.09007 * 109.47205 * 300.00184 * 1 2 3 29 29 H 1.09002 * 109.47071 * 59.99465 * 1 2 3 30 30 H 1.08992 * 109.47463 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47205 * 239.99816 * 2 1 3 32 32 H 1.09001 * 109.47129 * 119.99981 * 2 1 3 33 33 H 1.08005 * 120.32256 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.55489 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.46524 * 83.76950 * 11 10 8 36 36 H 1.09001 * 109.47315 * 203.76945 * 11 10 8 37 37 H 1.09001 * 109.46975 * 323.77283 * 11 10 8 38 38 H 1.08999 * 109.47439 * 209.99651 * 12 10 8 39 39 H 1.09000 * 109.46660 * 330.00361 * 12 10 8 40 40 H 1.09002 * 109.47350 * 300.00348 * 13 12 10 41 41 H 1.09000 * 109.46814 * 60.00151 * 13 12 10 42 42 H 1.00899 * 111.00144 * 56.04549 * 14 13 12 43 43 H 1.08999 * 109.46981 * 299.99856 * 15 14 13 44 44 H 1.09000 * 109.46964 * 59.99866 * 15 14 13 45 45 H 0.97001 * 119.99874 * 0.02562 * 18 16 15 46 46 H 0.96991 * 120.00303 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.47553 * 359.95874 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2692 2.0890 -1.1912 5 6 2.7314 3.3947 -1.1574 6 7 2.9479 4.0052 -0.0126 7 6 2.7285 3.4033 1.1497 8 6 2.9806 4.1334 2.4142 9 8 2.6642 3.6358 3.4766 10 7 3.5611 5.3494 2.3859 11 6 3.9020 5.9688 1.1027 12 6 3.8512 6.0519 3.6383 13 6 5.2538 5.6763 4.1208 14 7 5.5445 6.3802 5.3769 15 6 6.8864 6.0434 5.8707 16 6 7.1484 6.7831 7.1574 17 8 6.3005 7.5180 7.6178 18 7 8.3245 6.6270 7.7968 19 6 8.5627 7.2995 8.9675 20 1 7.8078 7.9539 9.3776 21 6 9.7750 7.1382 9.6271 22 7 10.6935 6.3415 9.1284 23 14 10.0993 8.0539 11.2226 24 1 9.6489 7.2250 12.3694 25 1 11.5534 8.3268 11.3500 26 1 9.3534 9.3380 11.2167 27 6 2.2686 2.0889 1.1910 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0950 1.5966 -2.1366 34 1 2.9166 3.9185 -2.0836 35 1 3.0242 6.4727 0.6980 36 1 4.7016 6.6947 1.2507 37 1 4.2336 5.2000 0.4049 38 1 3.8005 7.1279 3.4716 39 1 3.1187 5.7661 4.3932 40 1 5.3046 4.6003 4.2875 41 1 5.9863 5.9620 3.3658 42 1 4.8421 6.1817 6.0736 43 1 6.9490 4.9699 6.0491 44 1 7.6300 6.3323 5.1280 45 1 9.0024 6.0389 7.4287 46 1 11.5399 6.2292 9.5886 47 1 2.0947 1.5991 2.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481234229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:05 Heat of formation + Delta-G solvation = -22.204398 kcal Electronic energy + Delta-G solvation = -27288.997507 eV Core-core repulsion = 23279.299580 eV Total energy + Delta-G solvation = -4009.697927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.19337 -39.43737 -38.23227 -36.41511 -35.66506 -34.77842 -33.77048 -31.94767 -31.19802 -30.94067 -29.62444 -26.95792 -26.31175 -25.06892 -24.58088 -23.59782 -22.58324 -21.83995 -19.80623 -19.13884 -17.86454 -17.59966 -17.22121 -16.57477 -16.28906 -16.03747 -15.63097 -15.52244 -15.30590 -14.61444 -14.46875 -14.35120 -14.16108 -14.01741 -13.85113 -13.61153 -13.34357 -13.15791 -13.04010 -12.92687 -12.61484 -12.38664 -12.18328 -11.99541 -11.79197 -11.54193 -11.47391 -11.45897 -11.07895 -10.93270 -10.49180 -10.36317 -10.18348 -10.06739 -9.65576 -9.54899 -9.47305 -8.82158 -8.40776 -8.03252 -7.92078 -6.38059 -3.78767 0.24813 0.71626 2.44145 2.68968 3.20859 3.29110 3.35493 3.43061 3.70129 3.95288 4.02262 4.13910 4.18779 4.48680 4.50286 4.56044 4.63557 4.76047 4.82537 4.99633 5.03970 5.15804 5.19393 5.23795 5.24681 5.30906 5.32654 5.37511 5.46092 5.54193 5.58268 5.65440 5.77762 5.81294 5.86787 5.90819 5.97973 6.03876 6.17491 6.29478 6.40738 7.10745 7.22559 7.30352 7.58836 7.69008 7.91386 8.10197 8.65323 9.21579 9.58294 10.09936 10.79790 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025114 B = 0.001666 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.648009 B =16807.506410 C =17184.149024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.044 4.044 4 C -0.151 4.151 5 C 0.094 3.906 6 N -0.454 5.454 7 C 0.085 3.915 8 C 0.565 3.435 9 O -0.532 6.532 10 N -0.593 5.593 11 C 0.075 3.925 12 C 0.114 3.886 13 C 0.047 3.953 14 N -0.666 5.666 15 C 0.052 3.948 16 C 0.442 3.558 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C -0.109 4.109 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.164 0.836 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.030 0.970 41 H 0.071 0.929 42 H 0.351 0.649 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.565 -12.314 -26.489 33.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C -0.052 4.052 4 C -0.171 4.171 5 C -0.064 4.064 6 N -0.167 5.167 7 C -0.053 4.053 8 C 0.351 3.649 9 O -0.408 6.408 10 N -0.324 5.324 11 C -0.068 4.068 12 C -0.008 4.008 13 C -0.084 4.084 14 N -0.299 5.299 15 C -0.080 4.080 16 C 0.227 3.773 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.130 4.130 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.156 0.844 34 H 0.181 0.819 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.170 0.830 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.588 -10.654 -25.798 32.469 hybrid contribution 0.393 -1.648 0.697 1.832 sum -16.195 -12.302 -25.102 32.306 Atomic orbital electron populations 1.21754 0.93931 1.02373 1.02516 1.20620 0.96749 0.91318 1.03835 1.20378 0.95327 0.96894 0.92595 1.22261 0.99820 0.96198 0.98847 1.22947 0.94891 0.92231 0.96349 1.68112 1.13828 1.36683 0.98035 1.21165 0.99149 0.92666 0.92281 1.17958 0.78290 0.81234 0.87395 1.90805 1.52252 1.67265 1.30449 1.47698 1.58850 1.17454 1.08417 1.22422 1.00469 0.99510 0.84354 1.21513 0.96740 0.97188 0.85384 1.22253 0.96681 0.96174 0.93296 1.60005 1.03729 1.60279 1.05920 1.21656 0.91693 0.97676 0.97013 1.19798 0.84066 0.86698 0.86707 1.90520 1.45944 1.41703 1.68484 1.41858 1.14263 1.41764 1.22218 1.19716 1.00998 1.23423 0.98715 0.87894 1.25266 0.95432 0.97461 0.99840 1.69616 1.07003 1.37470 1.40306 0.85845 0.77357 0.79757 0.81250 1.20449 1.20951 1.19400 1.22015 0.97109 0.94208 0.99687 0.92198 0.92413 0.91765 0.90223 0.90108 0.84365 0.81907 0.92516 0.91869 0.87593 0.88989 0.89601 0.95196 0.91008 0.82959 0.93826 0.89612 0.77458 0.91913 0.83511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.89 37.15 0.37 -0.26 16 2 C -0.09 -0.40 6.11 -27.88 -0.17 -0.57 16 3 C -0.04 -0.29 5.17 -104.35 -0.54 -0.83 16 4 C -0.15 -0.81 9.82 -39.32 -0.39 -1.19 16 5 C 0.09 0.58 11.18 -17.57 -0.20 0.38 16 6 N -0.45 -4.02 6.03 -9.80 -0.06 -4.08 16 7 C 0.08 0.91 6.62 -83.01 -0.55 0.36 16 8 C 0.56 7.45 7.66 -12.18 -0.09 7.36 16 9 O -0.53 -8.58 15.91 5.36 0.09 -8.50 16 10 N -0.59 -7.01 2.87 -182.56 -0.52 -7.53 16 11 C 0.07 0.68 9.31 59.85 0.56 1.24 16 12 C 0.11 1.45 5.65 -4.04 -0.02 1.43 16 13 C 0.05 0.66 6.01 -3.82 -0.02 0.63 16 14 N -0.67 -11.56 6.12 -115.06 -0.70 -12.27 16 15 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 16 C 0.44 10.85 7.82 -10.98 -0.09 10.76 16 17 O -0.58 -16.32 15.78 5.55 0.09 -16.23 16 18 N -0.56 -14.75 5.29 -10.96 -0.06 -14.81 16 19 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 20 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 21 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -25.01 13.05 55.50 0.72 -24.29 16 23 Si 0.93 21.45 29.55 -169.99 -5.02 16.42 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 C -0.11 -1.01 9.34 -39.05 -0.36 -1.37 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.25 8.10 -51.93 -0.42 -0.17 16 32 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 33 H 0.14 0.36 8.06 -52.48 -0.42 -0.06 16 34 H 0.16 0.49 8.06 -52.48 -0.42 0.07 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.52 8.02 -51.93 -0.42 0.10 16 37 H 0.11 0.94 5.26 -52.12 -0.27 0.67 16 38 H 0.09 1.08 8.07 -51.93 -0.42 0.66 16 39 H 0.09 1.20 7.39 -51.93 -0.38 0.81 16 40 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.35 6.35 8.43 -39.29 -0.33 6.02 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 46 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.15 1.38 7.66 -52.49 -0.40 0.98 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -34.50 397.52 -8.39 -42.89 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -7.13 Total: 11.72 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -1.78 Total: 10.69 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -0.62 Total: -62.98 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: 0.17 Total: -24.73 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.50 -8.39 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481234229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.685 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds