Wall clock time and date at job start Tue Mar 31 2020 17:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47391 * 2 1 4 4 C 1.38624 * 120.75751 * 269.97650 * 3 2 1 5 5 C 1.38553 * 119.35610 * 180.02562 * 4 3 2 6 6 N 1.31528 * 120.90309 * 0.02562 * 5 4 3 7 7 C 1.32716 * 121.63676 * 359.68372 * 6 5 4 8 8 C 1.48172 * 119.72308 * 180.29170 * 7 6 5 9 9 O 1.21505 * 120.00586 * 173.07758 * 8 7 6 10 10 N 1.34780 * 119.99617 * 353.07467 * 8 7 6 11 11 C 1.46505 * 120.00312 * 2.04037 * 10 8 7 12 12 C 1.46502 * 120.00109 * 182.04166 * 10 8 7 13 13 C 1.53004 * 109.47193 * 89.99750 * 12 10 8 14 14 N 1.46897 * 109.47397 * 180.02562 * 13 12 10 15 15 C 1.46897 * 111.00129 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46868 * 179.97438 * 15 14 13 17 17 O 1.21288 * 120.00002 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99628 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99741 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00483 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00016 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99982 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00097 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47165 * 90.00369 * 23 21 19 25 25 H 1.48503 * 109.47135 * 210.00343 * 23 21 19 26 26 H 1.48501 * 109.47152 * 330.00196 * 23 21 19 27 27 C 1.38589 * 120.75360 * 90.00054 * 3 2 1 28 28 H 1.09007 * 109.47205 * 300.00184 * 1 2 3 29 29 H 1.09002 * 109.47071 * 59.99465 * 1 2 3 30 30 H 1.08992 * 109.47463 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47205 * 239.99816 * 2 1 3 32 32 H 1.09001 * 109.47129 * 119.99981 * 2 1 3 33 33 H 1.08005 * 120.32256 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.55489 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.46524 * 83.76950 * 11 10 8 36 36 H 1.09001 * 109.47315 * 203.76945 * 11 10 8 37 37 H 1.09001 * 109.46975 * 323.77283 * 11 10 8 38 38 H 1.08999 * 109.47439 * 209.99651 * 12 10 8 39 39 H 1.09000 * 109.46660 * 330.00361 * 12 10 8 40 40 H 1.09002 * 109.47350 * 300.00348 * 13 12 10 41 41 H 1.09000 * 109.46814 * 60.00151 * 13 12 10 42 42 H 1.00899 * 111.00144 * 56.04549 * 14 13 12 43 43 H 1.08999 * 109.46981 * 299.99856 * 15 14 13 44 44 H 1.09000 * 109.46964 * 59.99866 * 15 14 13 45 45 H 0.97001 * 119.99874 * 0.02562 * 18 16 15 46 46 H 0.96991 * 120.00303 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.47553 * 359.95874 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2692 2.0890 -1.1912 5 6 2.7314 3.3947 -1.1574 6 7 2.9479 4.0052 -0.0126 7 6 2.7285 3.4033 1.1497 8 6 2.9806 4.1334 2.4142 9 8 2.6642 3.6358 3.4766 10 7 3.5611 5.3494 2.3859 11 6 3.9020 5.9688 1.1027 12 6 3.8512 6.0519 3.6383 13 6 5.2538 5.6763 4.1208 14 7 5.5445 6.3802 5.3769 15 6 6.8864 6.0434 5.8707 16 6 7.1484 6.7831 7.1574 17 8 6.3005 7.5180 7.6178 18 7 8.3245 6.6270 7.7968 19 6 8.5627 7.2995 8.9675 20 1 7.8078 7.9539 9.3776 21 6 9.7750 7.1382 9.6271 22 7 10.6935 6.3415 9.1284 23 14 10.0993 8.0539 11.2226 24 1 9.6489 7.2250 12.3694 25 1 11.5534 8.3268 11.3500 26 1 9.3534 9.3380 11.2167 27 6 2.2686 2.0889 1.1910 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0950 1.5966 -2.1366 34 1 2.9166 3.9185 -2.0836 35 1 3.0242 6.4727 0.6980 36 1 4.7016 6.6947 1.2507 37 1 4.2336 5.2000 0.4049 38 1 3.8005 7.1279 3.4716 39 1 3.1187 5.7661 4.3932 40 1 5.3046 4.6003 4.2875 41 1 5.9863 5.9620 3.3658 42 1 4.8421 6.1817 6.0736 43 1 6.9490 4.9699 6.0491 44 1 7.6300 6.3323 5.1280 45 1 9.0024 6.0389 7.4287 46 1 11.5399 6.2292 9.5886 47 1 2.0947 1.5991 2.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481234229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:04 Heat of formation + Delta-G solvation = -46.633924 kcal Electronic energy + Delta-G solvation = -27290.056851 eV Core-core repulsion = 23279.299580 eV Total energy + Delta-G solvation = -4010.757271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.89744 -40.34263 -40.10057 -37.60164 -36.47978 -35.97289 -35.57208 -33.30038 -32.60106 -31.48329 -30.75495 -28.10044 -27.56073 -26.15126 -25.45887 -24.72689 -23.40082 -22.66764 -21.19673 -20.50763 -19.91656 -18.41199 -17.95212 -17.93152 -17.21706 -17.05206 -16.82703 -16.62007 -16.48472 -16.07663 -15.81274 -15.38754 -15.17643 -14.97413 -14.90467 -14.58820 -14.45225 -14.22874 -13.98762 -13.86802 -13.58557 -13.53653 -13.36604 -13.11783 -12.98252 -12.84895 -12.73753 -12.43146 -12.27684 -12.12042 -12.11382 -11.90363 -11.52468 -11.43536 -10.60054 -10.42663 -10.28243 -10.17682 -10.03790 -9.71882 -9.47180 -8.47981 -5.97229 -0.39542 0.18733 1.37606 1.41349 1.54568 1.60651 1.78734 2.01841 2.28921 2.77273 2.89209 3.07597 3.18658 3.48028 3.56878 3.71483 3.91748 3.98726 4.02442 4.05042 4.21417 4.26829 4.42015 4.42453 4.43867 4.45483 4.46554 4.53923 4.60010 4.70248 4.77508 4.80738 4.92854 4.93746 4.98858 5.07813 5.20555 5.33097 5.36148 5.39551 5.44526 5.69361 5.79996 6.03185 6.21043 6.25348 6.57667 6.67329 6.99296 7.10325 7.53007 8.08153 8.69478 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025114 B = 0.001666 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.648009 B =16807.506410 C =17184.149024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.047 4.047 4 C -0.136 4.136 5 C 0.093 3.907 6 N -0.464 5.464 7 C 0.059 3.941 8 C 0.556 3.444 9 O -0.576 6.576 10 N -0.591 5.591 11 C 0.076 3.924 12 C 0.119 3.881 13 C 0.057 3.943 14 N -0.674 5.674 15 C 0.066 3.934 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.572 5.572 19 C -0.337 4.337 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.996 3.004 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.273 1.273 27 C -0.124 4.124 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.176 0.824 34 H 0.200 0.800 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.019 0.981 41 H 0.088 0.912 42 H 0.344 0.656 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.169 -12.912 -29.296 35.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.054 4.054 4 C -0.155 4.155 5 C -0.066 4.066 6 N -0.176 5.176 7 C -0.077 4.077 8 C 0.344 3.656 9 O -0.456 6.456 10 N -0.322 5.322 11 C -0.065 4.065 12 C -0.004 4.004 13 C -0.073 4.073 14 N -0.307 5.307 15 C -0.067 4.067 16 C 0.225 3.775 17 O -0.508 6.508 18 N -0.209 5.209 19 C -0.466 4.466 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.819 3.181 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.145 4.145 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.194 0.806 34 H 0.216 0.784 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.038 0.962 41 H 0.106 0.894 42 H 0.162 0.838 43 H 0.079 0.921 44 H 0.127 0.873 45 H 0.230 0.770 46 H 0.088 0.912 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.172 -11.258 -28.649 34.771 hybrid contribution 0.227 -1.510 1.429 2.091 sum -15.945 -12.768 -27.220 34.032 Atomic orbital electron populations 1.21748 0.93743 1.02962 1.01995 1.20678 0.96796 0.90130 1.04738 1.20652 0.94835 0.97819 0.92133 1.22698 0.97388 0.95764 0.99673 1.23617 0.93659 0.92829 0.96471 1.68036 1.14348 1.37097 0.98154 1.20833 1.01774 0.93121 0.91987 1.18479 0.77656 0.81430 0.87996 1.90763 1.54213 1.68371 1.32242 1.47806 1.58251 1.17164 1.08941 1.22561 1.01135 0.99773 0.83061 1.21377 0.95404 0.97881 0.85709 1.22225 0.97860 0.95170 0.92028 1.60026 1.02850 1.61077 1.06725 1.21531 0.93087 0.97651 0.94389 1.20772 0.82862 0.85965 0.87877 1.90488 1.46965 1.43432 1.69940 1.41916 1.15021 1.41911 1.22022 1.19701 1.01518 1.24877 1.00508 0.90233 1.26079 0.94623 0.97854 1.02720 1.69675 1.07300 1.37703 1.41402 0.84890 0.77740 0.78278 0.77186 1.19653 1.19382 1.19728 1.22022 0.98011 0.94129 1.00361 0.93922 0.91715 0.90651 0.87928 0.90621 0.80644 0.78357 0.91813 0.90717 0.87048 0.87696 0.91469 0.96233 0.89410 0.83761 0.92123 0.87331 0.76951 0.91237 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 71.98 0.71 -0.33 16 2 C -0.09 -0.63 6.11 29.85 0.18 -0.45 16 3 C -0.05 -0.55 5.17 -19.69 -0.10 -0.65 16 4 C -0.14 -0.99 9.82 22.44 0.22 -0.77 16 5 C 0.09 0.85 11.18 84.81 0.95 1.80 16 6 N -0.46 -7.55 6.03 -184.91 -1.12 -8.67 16 7 C 0.06 1.28 6.62 41.91 0.28 1.56 16 8 C 0.56 15.38 7.66 86.88 0.67 16.05 16 9 O -0.58 -20.06 15.91 -3.73 -0.06 -20.12 16 10 N -0.59 -14.06 2.87 -849.79 -2.44 -16.50 16 11 C 0.08 1.28 9.31 127.77 1.19 2.47 16 12 C 0.12 3.07 5.65 86.38 0.49 3.56 16 13 C 0.06 1.59 6.01 86.31 0.52 2.11 16 14 N -0.67 -23.38 6.12 -517.93 -3.17 -26.56 16 15 C 0.07 2.44 6.17 85.56 0.53 2.97 16 16 C 0.44 21.84 7.82 87.66 0.69 22.52 16 17 O -0.62 -35.83 15.78 -3.06 -0.05 -35.88 16 18 N -0.57 -30.40 5.29 -306.99 -1.62 -32.02 16 19 C -0.34 -19.65 9.68 84.04 0.81 -18.84 16 20 H 0.08 4.94 7.16 -2.91 -0.02 4.91 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 22 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 23 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 27 C -0.12 -2.36 9.34 22.61 0.21 -2.15 16 28 H 0.04 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.10 0.31 8.10 -2.38 -0.02 0.29 16 32 H 0.08 0.64 8.10 -2.39 -0.02 0.62 16 33 H 0.18 -0.02 8.06 -2.91 -0.02 -0.04 16 34 H 0.20 0.30 8.06 -2.91 -0.02 0.28 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.08 8.02 -2.39 -0.02 1.06 16 37 H 0.11 1.80 5.26 -2.77 -0.01 1.79 16 38 H 0.10 2.41 8.07 -2.39 -0.02 2.39 16 39 H 0.07 1.99 7.39 -2.39 -0.02 1.97 16 40 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.34 12.78 8.43 -89.69 -0.76 12.03 16 43 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 45 H 0.40 20.00 7.90 -92.71 -0.73 19.26 16 46 H 0.28 14.26 8.31 -92.72 -0.77 13.49 16 47 H 0.13 2.78 7.66 -2.91 -0.02 2.76 16 Total: -1.00 -77.18 397.52 1.16 -76.02 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -0.49 Total: 38.61 kcal Atomic # 6 Polarization: 21.82 SS G_CDS: 7.81 Total: 29.62 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -8.07 Total: -134.03 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: -0.11 Total: -56.00 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -77.18 1.16 -76.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481234229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.384 kcal (2) G-P(sol) polarization free energy of solvation -77.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds