Wall clock time and date at job start Tue Mar 31 2020 17:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47475 * 2 1 4 4 N 1.46498 * 109.46020 * 296.21415 * 3 2 1 5 5 C 1.36941 * 119.99887 * 304.34581 * 4 3 2 6 6 H 1.08002 * 119.99861 * 354.62223 * 5 4 3 7 7 C 1.38815 * 120.00154 * 174.63107 * 5 4 3 8 8 N 1.31615 * 119.99638 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99853 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46992 * 59.99929 * 9 7 5 11 11 H 1.48502 * 109.46951 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47158 * 299.99958 * 9 7 5 13 13 C 1.53042 * 109.46259 * 56.18365 * 3 2 1 14 14 C 1.53187 * 109.31513 * 181.38813 * 13 3 2 15 15 N 1.46925 * 108.77388 * 305.36372 * 14 13 3 16 16 C 1.34778 * 120.62981 * 233.58397 * 15 14 13 17 17 O 1.21501 * 120.00171 * 5.58209 * 16 15 14 18 18 C 1.48294 * 119.99891 * 185.57502 * 16 15 14 19 19 N 1.32544 * 119.11391 * 215.63707 * 18 16 15 20 20 C 1.31950 * 120.83490 * 180.02562 * 19 18 16 21 21 C 1.39443 * 119.08742 * 0.02562 * 20 19 18 22 22 O 1.35734 * 120.80819 * 180.02562 * 21 20 19 23 23 C 1.42902 * 116.99843 * 180.02562 * 22 21 20 24 24 C 1.39445 * 118.38413 * 0.27316 * 21 20 19 25 25 N 1.31954 * 119.07912 * 359.44547 * 24 21 20 26 26 C 1.46924 * 118.74053 * 53.86391 * 15 14 13 27 27 C 1.53041 * 109.46370 * 176.25320 * 3 2 1 28 28 H 1.09003 * 109.47176 * 294.64274 * 1 2 3 29 29 H 1.09006 * 109.46890 * 54.63405 * 1 2 3 30 30 H 1.08997 * 109.47645 * 174.64148 * 1 2 3 31 31 H 1.09002 * 109.47271 * 239.99448 * 2 1 3 32 32 H 1.09004 * 109.46687 * 119.99661 * 2 1 3 33 33 H 0.96994 * 120.00517 * 124.34319 * 4 3 2 34 34 H 0.97006 * 119.99391 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.49427 * 61.43445 * 13 3 2 36 36 H 1.09005 * 109.49764 * 301.34475 * 13 3 2 37 37 H 1.09000 * 109.58907 * 185.57809 * 14 13 3 38 38 H 1.08997 * 109.59121 * 65.15601 * 14 13 3 39 39 H 1.08006 * 120.45372 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.47044 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.46944 * 299.99400 * 23 22 21 42 42 H 1.09000 * 109.47203 * 59.99529 * 23 22 21 43 43 H 1.07998 * 120.46305 * 179.70245 * 24 21 20 44 44 H 1.09001 * 109.58726 * 65.92101 * 26 15 14 45 45 H 1.08994 * 109.59071 * 186.35492 * 26 15 14 46 46 H 1.09001 * 109.49644 * 298.56564 * 27 3 2 47 47 H 1.08994 * 109.49651 * 58.65998 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.6275 2.1060 -1.2392 5 6 1.9598 1.5613 -2.4509 6 1 2.5986 0.6916 -2.4950 7 6 1.4756 2.1270 -3.6224 8 7 0.6968 3.1866 -3.5686 9 14 1.9294 1.3843 -5.2753 10 1 1.4552 -0.0217 -5.3331 11 1 1.2889 2.1674 -6.3624 12 1 3.4044 1.4166 -5.4442 13 6 1.4529 2.1909 1.1989 14 6 1.9381 3.6437 1.1762 15 7 3.4062 3.6512 1.1203 16 6 4.1243 4.3458 2.0249 17 8 3.5650 4.8901 2.9561 18 6 5.5972 4.4456 1.8838 19 7 6.3505 4.4537 2.9743 20 6 7.6642 4.5417 2.8882 21 6 8.2568 4.6274 1.6289 22 8 9.6049 4.7188 1.4997 23 6 10.1251 4.8030 0.1714 24 6 7.4304 4.6222 0.5057 25 7 6.1248 4.5259 0.6705 26 6 4.0765 2.8921 0.0558 27 6 3.5675 1.4431 0.0943 28 1 -0.3634 0.4285 0.9341 29 1 -0.3633 0.5948 -0.8381 30 1 -0.3634 -1.0231 -0.0960 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.1190 2.9311 -1.2015 34 1 0.3581 3.5817 -4.3873 35 1 1.7799 1.7124 2.1221 36 1 0.3645 2.1698 1.1434 37 1 1.6042 4.1546 2.0793 38 1 1.5363 4.1496 0.2982 39 1 8.2721 4.5482 3.7810 40 1 11.2122 4.8716 0.2106 41 1 9.8369 3.9134 -0.3887 42 1 9.7229 5.6885 -0.3208 43 1 7.8534 4.6919 -0.4856 44 1 3.8456 3.3378 -0.9118 45 1 5.1540 2.9068 0.2194 46 1 3.8746 0.9718 1.0279 47 1 3.9842 0.8899 -0.7473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700219122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:51 Heat of formation + Delta-G solvation = 8.544793 kcal Electronic energy + Delta-G solvation = -29990.052851 eV Core-core repulsion = 25981.688309 eV Total energy + Delta-G solvation = -4008.364542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.70812 -39.91469 -38.85428 -37.80219 -34.94911 -34.01455 -32.61455 -31.72381 -30.61538 -30.09892 -29.03989 -28.16926 -25.59689 -24.79473 -24.32275 -23.74744 -22.65775 -21.60200 -20.16849 -18.65167 -18.52191 -18.28738 -17.28755 -17.02114 -16.56577 -16.06395 -15.35210 -15.18577 -14.89546 -14.76461 -14.16101 -13.99505 -13.97448 -13.85582 -13.76474 -13.36943 -13.18009 -12.73882 -12.68028 -12.27409 -12.22972 -11.92763 -11.68559 -11.57028 -11.23927 -11.15629 -11.08174 -10.86791 -10.69172 -10.65315 -10.27400 -10.22729 -10.13577 -9.74169 -9.63820 -9.43452 -9.39743 -9.04292 -8.84862 -8.20818 -6.92899 -5.75909 -3.03940 0.36195 0.71774 2.54646 2.64196 2.93084 3.41816 3.47237 3.48343 3.50454 3.85831 3.94256 4.12652 4.36119 4.58637 4.66779 4.67886 4.78740 5.02615 5.30064 5.33499 5.36819 5.40302 5.56430 5.62418 5.68834 5.77859 5.84704 5.99297 6.05557 6.13142 6.16890 6.21950 6.33462 6.36896 6.46193 6.56629 6.58468 6.67859 6.72584 6.80300 6.90102 6.99833 7.09518 7.18222 7.57804 7.72051 7.74350 8.29532 8.42786 9.54210 10.11195 10.47236 11.46423 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.003729 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.664362 B = 7506.906629 C = 8948.043363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.202 3.798 4 N -0.712 5.712 5 C -0.229 4.229 6 H 0.068 0.932 7 C -0.010 4.010 8 N -0.931 5.931 9 Si 0.900 3.100 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.288 1.288 13 C -0.131 4.131 14 C 0.117 3.883 15 N -0.576 5.576 16 C 0.588 3.412 17 O -0.526 6.526 18 C 0.252 3.748 19 N -0.436 5.436 20 C 0.120 3.880 21 C 0.038 3.962 22 O -0.300 6.300 23 C 0.018 3.982 24 C 0.062 3.938 25 N -0.441 5.441 26 C 0.119 3.881 27 C -0.140 4.140 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.182 0.818 40 H 0.108 0.892 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.178 0.822 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.045 0.955 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.717 0.796 9.225 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.111 3.889 4 N -0.354 5.354 5 C -0.361 4.361 6 H 0.086 0.914 7 C -0.206 4.206 8 N -0.579 5.579 9 Si 0.731 3.269 10 H -0.215 1.215 11 H -0.219 1.219 12 H -0.215 1.215 13 C -0.169 4.169 14 C -0.005 4.005 15 N -0.308 5.308 16 C 0.371 3.629 17 O -0.401 6.401 18 C -0.017 4.017 19 N -0.150 5.150 20 C -0.049 4.049 21 C -0.013 4.013 22 O -0.210 6.210 23 C -0.077 4.077 24 C -0.106 4.106 25 N -0.157 5.157 26 C -0.003 4.003 27 C -0.180 4.180 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.219 0.781 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.199 0.801 40 H 0.126 0.874 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.194 0.806 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.064 0.936 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.574 0.934 9.803 17.588 hybrid contribution 1.219 -0.163 -1.609 2.025 sum 15.793 0.771 8.194 17.809 Atomic orbital electron populations 1.21681 0.96231 1.00177 1.01819 1.21852 0.96238 0.97901 1.00129 1.19535 0.90991 0.91482 0.86926 1.42463 1.65743 1.27762 0.99462 1.19028 1.23716 1.09562 0.83755 0.91390 1.24672 1.00133 0.98378 0.97411 1.69640 1.38019 1.23371 1.26902 0.86389 0.77656 0.78316 0.84518 1.21467 1.21904 1.21507 1.22158 1.01370 0.94833 0.98587 1.21700 0.77687 0.97895 1.03234 1.47913 1.07278 1.47037 1.28587 1.17109 0.83239 0.80148 0.82415 1.90769 1.70145 1.47547 1.31593 1.22802 0.96376 0.98486 0.84032 1.68291 1.04802 1.09452 1.32492 1.22832 0.89958 0.96445 0.95637 1.21204 0.85025 0.97955 0.97104 1.86074 1.16717 1.87273 1.30923 1.23263 1.00678 1.02068 0.81648 1.23566 0.89190 0.98797 0.99054 1.68479 1.12851 1.08834 1.25580 1.22038 0.95803 0.91459 0.90972 1.22481 0.99432 0.95620 1.00493 0.94063 0.90777 0.94676 0.91791 0.94212 0.78132 0.93589 0.91905 0.90095 0.89601 0.90038 0.80076 0.87372 0.91822 0.91930 0.80553 0.88887 0.90550 0.93595 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.22 37.16 0.34 -2.10 16 2 C -0.12 -2.13 4.84 -26.74 -0.13 -2.26 16 3 C 0.20 3.67 0.44 -131.78 -0.06 3.62 16 4 N -0.71 -15.77 3.47 -47.19 -0.16 -15.93 16 5 C -0.23 -5.72 8.63 -15.06 -0.13 -5.85 16 6 H 0.07 1.67 6.70 -52.49 -0.35 1.32 16 7 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 8 N -0.93 -26.53 13.06 55.49 0.72 -25.81 16 9 Si 0.90 21.43 29.55 -169.99 -5.02 16.41 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 C -0.13 -2.15 4.56 -26.61 -0.12 -2.27 16 14 C 0.12 2.00 6.17 -3.71 -0.02 1.98 16 15 N -0.58 -10.12 2.97 -173.45 -0.51 -10.63 16 16 C 0.59 10.79 7.59 -12.12 -0.09 10.70 16 17 O -0.53 -10.85 16.46 5.36 0.09 -10.76 16 18 C 0.25 4.08 6.75 -157.04 -1.06 3.02 16 19 N -0.44 -6.50 10.28 -11.03 -0.11 -6.61 16 20 C 0.12 1.32 11.27 -17.05 -0.19 1.13 16 21 C 0.04 0.38 6.75 -38.68 -0.26 0.12 16 22 O -0.30 -2.38 10.51 -18.91 -0.20 -2.58 16 23 C 0.02 0.08 9.84 101.05 0.99 1.08 16 24 C 0.06 0.67 10.31 -17.05 -0.18 0.49 16 25 N -0.44 -6.39 7.45 -11.03 -0.08 -6.47 16 26 C 0.12 2.07 5.58 -3.49 -0.02 2.05 16 27 C -0.14 -2.41 4.79 -26.39 -0.13 -2.53 16 28 H 0.04 0.64 6.65 -51.93 -0.35 0.29 16 29 H 0.07 1.51 7.57 -51.93 -0.39 1.11 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.22 7.01 -51.93 -0.36 0.86 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.38 9.26 6.35 -40.82 -0.26 9.00 16 34 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.30 6.41 -51.93 -0.33 0.97 16 37 H 0.09 1.45 7.00 -51.93 -0.36 1.08 16 38 H 0.08 1.50 6.85 -51.93 -0.36 1.15 16 39 H 0.18 1.39 8.06 -52.48 -0.42 0.96 16 40 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.06 0.24 7.72 -51.93 -0.40 -0.16 16 42 H 0.06 0.23 7.70 -51.93 -0.40 -0.17 16 43 H 0.18 1.33 6.47 -52.49 -0.34 0.99 16 44 H 0.09 1.87 7.73 -51.93 -0.40 1.47 16 45 H 0.08 1.24 4.95 -51.93 -0.26 0.98 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.07 1.33 7.46 -51.93 -0.39 0.94 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -31.40 370.94 -7.46 -38.87 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.62 Total: 9.13 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -1.15 Total: 8.79 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -0.15 Total: -65.45 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.11 Total: -13.33 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.40 -7.46 -38.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700219122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.411 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds