Wall clock time and date at job start Tue Mar 31 2020 17:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47475 * 2 1 4 4 N 1.46498 * 109.46020 * 296.21415 * 3 2 1 5 5 C 1.36941 * 119.99887 * 304.34581 * 4 3 2 6 6 H 1.08002 * 119.99861 * 354.62223 * 5 4 3 7 7 C 1.38815 * 120.00154 * 174.63107 * 5 4 3 8 8 N 1.31615 * 119.99638 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99853 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46992 * 59.99929 * 9 7 5 11 11 H 1.48502 * 109.46951 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47158 * 299.99958 * 9 7 5 13 13 C 1.53042 * 109.46259 * 56.18365 * 3 2 1 14 14 C 1.53187 * 109.31513 * 181.38813 * 13 3 2 15 15 N 1.46925 * 108.77388 * 305.36372 * 14 13 3 16 16 C 1.34778 * 120.62981 * 233.58397 * 15 14 13 17 17 O 1.21501 * 120.00171 * 5.58209 * 16 15 14 18 18 C 1.48294 * 119.99891 * 185.57502 * 16 15 14 19 19 N 1.32544 * 119.11391 * 215.63707 * 18 16 15 20 20 C 1.31950 * 120.83490 * 180.02562 * 19 18 16 21 21 C 1.39443 * 119.08742 * 0.02562 * 20 19 18 22 22 O 1.35734 * 120.80819 * 180.02562 * 21 20 19 23 23 C 1.42902 * 116.99843 * 180.02562 * 22 21 20 24 24 C 1.39445 * 118.38413 * 0.27316 * 21 20 19 25 25 N 1.31954 * 119.07912 * 359.44547 * 24 21 20 26 26 C 1.46924 * 118.74053 * 53.86391 * 15 14 13 27 27 C 1.53041 * 109.46370 * 176.25320 * 3 2 1 28 28 H 1.09003 * 109.47176 * 294.64274 * 1 2 3 29 29 H 1.09006 * 109.46890 * 54.63405 * 1 2 3 30 30 H 1.08997 * 109.47645 * 174.64148 * 1 2 3 31 31 H 1.09002 * 109.47271 * 239.99448 * 2 1 3 32 32 H 1.09004 * 109.46687 * 119.99661 * 2 1 3 33 33 H 0.96994 * 120.00517 * 124.34319 * 4 3 2 34 34 H 0.97006 * 119.99391 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.49427 * 61.43445 * 13 3 2 36 36 H 1.09005 * 109.49764 * 301.34475 * 13 3 2 37 37 H 1.09000 * 109.58907 * 185.57809 * 14 13 3 38 38 H 1.08997 * 109.59121 * 65.15601 * 14 13 3 39 39 H 1.08006 * 120.45372 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.47044 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.46944 * 299.99400 * 23 22 21 42 42 H 1.09000 * 109.47203 * 59.99529 * 23 22 21 43 43 H 1.07998 * 120.46305 * 179.70245 * 24 21 20 44 44 H 1.09001 * 109.58726 * 65.92101 * 26 15 14 45 45 H 1.08994 * 109.59071 * 186.35492 * 26 15 14 46 46 H 1.09001 * 109.49644 * 298.56564 * 27 3 2 47 47 H 1.08994 * 109.49651 * 58.65998 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.6275 2.1060 -1.2392 5 6 1.9598 1.5613 -2.4509 6 1 2.5986 0.6916 -2.4950 7 6 1.4756 2.1270 -3.6224 8 7 0.6968 3.1866 -3.5686 9 14 1.9294 1.3843 -5.2753 10 1 1.4552 -0.0217 -5.3331 11 1 1.2889 2.1674 -6.3624 12 1 3.4044 1.4166 -5.4442 13 6 1.4529 2.1909 1.1989 14 6 1.9381 3.6437 1.1762 15 7 3.4062 3.6512 1.1203 16 6 4.1243 4.3458 2.0249 17 8 3.5650 4.8901 2.9561 18 6 5.5972 4.4456 1.8838 19 7 6.3505 4.4537 2.9743 20 6 7.6642 4.5417 2.8882 21 6 8.2568 4.6274 1.6289 22 8 9.6049 4.7188 1.4997 23 6 10.1251 4.8030 0.1714 24 6 7.4304 4.6222 0.5057 25 7 6.1248 4.5259 0.6705 26 6 4.0765 2.8921 0.0558 27 6 3.5675 1.4431 0.0943 28 1 -0.3634 0.4285 0.9341 29 1 -0.3633 0.5948 -0.8381 30 1 -0.3634 -1.0231 -0.0960 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.1190 2.9311 -1.2015 34 1 0.3581 3.5817 -4.3873 35 1 1.7799 1.7124 2.1221 36 1 0.3645 2.1698 1.1434 37 1 1.6042 4.1546 2.0793 38 1 1.5363 4.1496 0.2982 39 1 8.2721 4.5482 3.7810 40 1 11.2122 4.8716 0.2106 41 1 9.8369 3.9134 -0.3887 42 1 9.7229 5.6885 -0.3208 43 1 7.8534 4.6919 -0.4856 44 1 3.8456 3.3378 -0.9118 45 1 5.1540 2.9068 0.2194 46 1 3.8746 0.9718 1.0279 47 1 3.9842 0.8899 -0.7473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700219122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:50 Heat of formation + Delta-G solvation = -12.080888 kcal Electronic energy + Delta-G solvation = -29990.947247 eV Core-core repulsion = 25981.688309 eV Total energy + Delta-G solvation = -4009.258939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.67788 -41.18498 -39.79069 -39.15856 -36.39196 -35.08026 -34.42634 -32.77116 -32.02673 -31.48338 -30.72606 -28.76435 -26.86335 -25.85680 -25.57187 -25.39942 -23.98873 -22.96426 -21.46144 -19.94835 -19.35075 -19.27671 -18.90606 -18.58886 -17.54885 -17.10851 -16.62669 -16.33459 -16.23174 -15.73151 -15.66064 -15.43358 -15.35563 -15.13084 -14.79762 -14.72805 -14.53221 -14.22199 -13.93087 -13.68599 -13.25148 -13.05330 -12.83784 -12.76211 -12.60584 -12.55542 -12.46843 -12.29052 -12.24767 -12.17767 -12.06300 -11.69159 -11.60304 -11.42878 -11.14131 -10.93244 -10.71227 -10.40134 -9.90408 -9.63935 -8.81593 -7.79873 -5.04800 -0.62255 -0.15158 1.38922 1.51877 1.53094 1.58228 1.60777 1.98344 2.48713 2.65173 2.80461 3.03708 3.18077 3.53851 3.61641 3.74022 3.86893 3.96163 4.01941 4.18737 4.25767 4.31946 4.37743 4.45097 4.55126 4.57836 4.64512 4.69287 4.75724 4.76934 4.80210 4.84701 4.94524 5.07534 5.13153 5.16944 5.26319 5.35416 5.39461 5.54862 5.57613 5.64343 5.65876 5.75988 5.97542 6.25288 6.41930 6.66882 6.94819 7.49571 8.25568 8.50060 9.43494 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.003729 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.664362 B = 7506.906629 C = 8948.043363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.196 3.804 4 N -0.716 5.716 5 C -0.205 4.205 6 H 0.074 0.926 7 C -0.072 4.072 8 N -0.968 5.968 9 Si 0.953 3.047 10 H -0.284 1.284 11 H -0.306 1.306 12 H -0.281 1.281 13 C -0.121 4.121 14 C 0.118 3.882 15 N -0.576 5.576 16 C 0.585 3.415 17 O -0.559 6.559 18 C 0.222 3.778 19 N -0.458 5.458 20 C 0.115 3.885 21 C 0.065 3.935 22 O -0.298 6.298 23 C 0.005 3.995 24 C 0.057 3.943 25 N -0.460 5.460 26 C 0.131 3.869 27 C -0.134 4.134 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.372 0.628 34 H 0.244 0.756 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.214 0.786 40 H 0.132 0.868 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.209 0.791 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.564 -0.451 10.082 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C 0.106 3.894 4 N -0.356 5.356 5 C -0.338 4.338 6 H 0.092 0.908 7 C -0.264 4.264 8 N -0.620 5.620 9 Si 0.785 3.215 10 H -0.211 1.211 11 H -0.233 1.233 12 H -0.207 1.207 13 C -0.159 4.159 14 C -0.004 4.004 15 N -0.307 5.307 16 C 0.370 3.630 17 O -0.436 6.436 18 C -0.046 4.046 19 N -0.174 5.174 20 C -0.054 4.054 21 C 0.013 3.987 22 O -0.207 6.207 23 C -0.089 4.089 24 C -0.111 4.111 25 N -0.178 5.178 26 C 0.009 3.991 27 C -0.174 4.174 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.205 0.795 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.230 0.770 40 H 0.150 0.850 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.225 0.775 44 H 0.079 0.921 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.472 -0.359 10.673 20.477 hybrid contribution 0.586 0.243 -1.810 1.918 sum 18.058 -0.117 8.863 20.116 Atomic orbital electron populations 1.21605 0.96021 1.00546 1.01175 1.21811 0.96368 0.96959 1.00612 1.19793 0.91765 0.91995 0.85847 1.42574 1.65359 1.27473 1.00233 1.19308 1.21486 1.08369 0.84613 0.90830 1.25276 1.01470 0.99393 1.00250 1.69794 1.40341 1.25239 1.26663 0.85500 0.77492 0.77375 0.81134 1.21123 1.23262 1.20726 1.22083 1.01515 0.93957 0.98379 1.21622 0.77925 0.98444 1.02370 1.47933 1.07274 1.47008 1.28527 1.17497 0.84542 0.79223 0.81777 1.90727 1.71292 1.48708 1.32874 1.22214 0.95266 1.01947 0.85133 1.68219 1.06529 1.10223 1.32391 1.23346 0.88954 0.95684 0.97415 1.21144 0.85945 0.95252 0.96382 1.86107 1.15125 1.86192 1.33295 1.23652 1.02060 1.03099 0.80073 1.24074 0.88041 0.98098 1.00842 1.68375 1.14806 1.09606 1.24996 1.21853 0.96722 0.91145 0.89350 1.22410 0.98302 0.95479 1.01213 0.92235 0.94483 0.93192 0.93545 0.91379 0.79515 0.94705 0.90119 0.89699 0.89372 0.92032 0.76980 0.85020 0.90749 0.90880 0.77485 0.92113 0.89085 0.91568 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.22 71.98 0.66 -3.83 16 2 C -0.12 -3.92 4.84 30.59 0.15 -3.78 16 3 C 0.20 6.95 0.44 3.63 0.00 6.96 16 4 N -0.72 -32.14 3.47 -303.22 -1.05 -33.19 16 5 C -0.21 -10.31 8.63 84.03 0.73 -9.59 16 6 H 0.07 3.58 6.70 -2.91 -0.02 3.56 16 7 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 8 N -0.97 -57.05 13.06 21.65 0.28 -56.77 16 9 Si 0.95 44.69 29.55 68.60 2.03 46.72 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 C -0.12 -3.87 4.56 30.67 0.14 -3.73 16 14 C 0.12 4.14 6.17 86.36 0.53 4.67 16 15 N -0.58 -20.45 2.97 -820.98 -2.43 -22.88 16 16 C 0.58 21.77 7.59 86.92 0.66 22.43 16 17 O -0.56 -23.59 16.46 -3.72 -0.06 -23.65 16 18 C 0.22 7.14 6.75 137.56 0.93 8.07 16 19 N -0.46 -13.28 10.28 -188.81 -1.94 -15.22 16 20 C 0.11 2.27 11.27 84.97 0.96 3.23 16 21 C 0.07 1.10 6.75 22.85 0.15 1.26 16 22 O -0.30 -3.62 10.51 -90.58 -0.95 -4.57 16 23 C 0.00 0.02 9.84 113.37 1.12 1.14 16 24 C 0.06 1.09 10.31 84.97 0.88 1.97 16 25 N -0.46 -12.98 7.45 -188.81 -1.41 -14.38 16 26 C 0.13 4.54 5.58 86.51 0.48 5.02 16 27 C -0.13 -4.44 4.79 30.82 0.15 -4.29 16 28 H 0.06 1.72 6.65 -2.39 -0.02 1.71 16 29 H 0.04 1.49 7.57 -2.38 -0.02 1.47 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.70 7.01 -2.39 -0.02 1.68 16 32 H 0.07 1.90 8.14 -2.38 -0.02 1.89 16 33 H 0.37 18.55 6.35 -92.71 -0.59 17.97 16 34 H 0.24 14.32 8.31 -92.70 -0.77 13.55 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.08 2.65 6.41 -2.38 -0.02 2.64 16 37 H 0.09 3.04 7.00 -2.39 -0.02 3.02 16 38 H 0.06 2.39 6.85 -2.39 -0.02 2.37 16 39 H 0.21 2.62 8.06 -2.91 -0.02 2.60 16 40 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.07 0.27 7.72 -2.39 -0.02 0.25 16 42 H 0.07 0.27 7.70 -2.39 -0.02 0.25 16 43 H 0.21 2.46 6.47 -2.91 -0.02 2.44 16 44 H 0.06 2.50 7.73 -2.39 -0.02 2.48 16 45 H 0.09 2.90 4.95 -2.39 -0.01 2.89 16 46 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.07 2.34 7.46 -2.39 -0.02 2.32 16 Total: -1.00 -70.26 370.94 2.88 -67.38 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.42 Total: 30.48 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: 8.00 Total: 26.09 kcal Atomic # 7 Polarization: -135.90 SS G_CDS: -6.55 Total: -142.45 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -1.01 Total: -28.22 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -70.26 2.88 -67.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700219122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.298 kcal (2) G-P(sol) polarization free energy of solvation -70.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds