Wall clock time and date at job start Tue Mar 31 2020 17:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47340 * 2 1 4 4 N 1.46503 * 109.45721 * 304.45917 * 3 2 1 5 5 C 1.36940 * 119.99888 * 297.25272 * 4 3 2 6 6 H 1.08003 * 120.00132 * 354.16646 * 5 4 3 7 7 C 1.38819 * 120.00068 * 174.16881 * 5 4 3 8 8 N 1.31616 * 119.99752 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00054 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47557 * 90.00025 * 9 7 5 11 11 H 1.48508 * 109.47082 * 210.00205 * 9 7 5 12 12 H 1.48505 * 109.47000 * 329.99831 * 9 7 5 13 13 C 1.53037 * 109.46328 * 184.48886 * 3 2 1 14 14 C 1.53188 * 109.31565 * 178.59484 * 13 3 2 15 15 N 1.46935 * 108.76364 * 54.65712 * 14 13 3 16 16 C 1.34771 * 120.63093 * 126.40702 * 15 14 13 17 17 O 1.21543 * 119.99620 * 187.74586 * 16 15 14 18 18 C 1.47935 * 120.00225 * 7.74177 * 16 15 14 19 19 C 1.39973 * 120.11410 * 189.30177 * 18 16 15 20 20 C 1.38424 * 117.96812 * 179.73809 * 19 18 16 21 21 C 1.39350 * 118.03465 * 0.52433 * 20 19 18 22 22 O 1.35515 * 120.03256 * 179.70759 * 21 20 19 23 23 C 1.42894 * 117.00467 * 180.02562 * 22 21 20 24 24 N 1.32680 * 119.94030 * 359.72551 * 21 20 19 25 25 N 1.28359 * 122.19931 * 0.02562 * 24 21 20 26 26 C 1.46932 * 118.73516 * 306.38173 * 15 14 13 27 27 C 1.53034 * 109.46130 * 64.42823 * 3 2 1 28 28 H 1.09003 * 109.47100 * 58.93679 * 1 2 3 29 29 H 1.09001 * 109.47269 * 178.94141 * 1 2 3 30 30 H 1.09003 * 109.47447 * 298.93857 * 1 2 3 31 31 H 1.08997 * 109.47507 * 239.99375 * 2 1 3 32 32 H 1.09003 * 109.47224 * 119.99586 * 2 1 3 33 33 H 0.96996 * 120.00586 * 117.24719 * 4 3 2 34 34 H 0.97005 * 120.00055 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.49876 * 298.56159 * 13 3 2 36 36 H 1.09004 * 109.49574 * 58.65684 * 13 3 2 37 37 H 1.08994 * 109.60232 * 294.86838 * 14 13 3 38 38 H 1.08996 * 109.58869 * 174.43427 * 14 13 3 39 39 H 1.08000 * 121.02003 * 359.97438 * 19 18 16 40 40 H 1.07997 * 120.98250 * 180.25286 * 20 19 18 41 41 H 1.08997 * 109.47288 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.47374 * 300.00394 * 23 22 21 43 43 H 1.09003 * 109.46830 * 59.99798 * 23 22 21 44 44 H 1.09002 * 109.58624 * 293.82554 * 26 15 14 45 45 H 1.08993 * 109.58392 * 173.39503 * 26 15 14 46 46 H 1.08994 * 109.50192 * 301.34306 * 27 3 2 47 47 H 1.09002 * 109.49772 * 61.44482 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4658 2.1631 -1.1390 5 6 1.7498 1.7615 -2.4170 6 1 2.4697 0.9749 -2.5884 7 6 1.1124 2.3654 -3.4922 8 7 0.2354 3.3244 -3.2833 9 14 1.4993 1.8171 -5.2354 10 1 0.5779 0.7197 -5.6252 11 1 1.3259 2.9625 -6.1646 12 1 2.9017 1.3332 -5.3023 13 6 3.5662 1.4437 -0.1129 14 6 4.0705 2.8897 -0.1480 15 7 3.5523 3.5997 1.0295 16 6 4.3884 4.2526 1.8607 17 8 3.9695 4.7157 2.9035 18 6 5.8159 4.4056 1.5040 19 6 6.7246 4.9070 2.4432 20 6 8.0505 5.0265 2.0640 21 6 8.3974 4.6510 0.7676 22 8 9.6828 4.7569 0.3518 23 6 9.9661 4.3544 -0.9897 24 7 7.4679 4.1901 -0.0594 25 7 6.2384 4.0733 0.2902 26 6 2.1051 3.5848 1.2830 27 6 1.6227 2.1308 1.3016 28 1 -0.3633 0.5303 -0.8803 29 1 -0.3634 -1.0275 -0.0190 30 1 -0.3634 0.4973 0.8994 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.8844 2.9247 -0.9879 34 1 -0.2103 3.7461 -4.0345 35 1 3.9950 0.9293 0.7471 36 1 3.8636 0.9326 -1.0286 37 1 3.7157 3.3789 -1.0551 38 1 5.1603 2.8972 -0.1287 39 1 6.4019 5.1884 3.4347 40 1 8.7934 5.4038 2.7511 41 1 11.0282 4.4902 -1.1932 42 1 9.7025 3.3046 -1.1174 43 1 9.3833 4.9621 -1.6820 44 1 1.5899 4.1305 0.4925 45 1 1.8981 4.0507 2.2463 46 1 0.5369 2.1089 1.3929 47 1 2.0701 1.6100 2.1482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700222493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:53 Heat of formation + Delta-G solvation = 22.689269 kcal Electronic energy + Delta-G solvation = -30060.470221 eV Core-core repulsion = 26052.719029 eV Total energy + Delta-G solvation = -4007.751191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.62538 -39.92861 -38.69346 -37.88613 -34.87585 -33.47542 -32.66848 -32.21709 -30.54705 -30.05025 -28.98215 -27.90737 -25.89765 -24.60223 -24.23627 -23.69471 -22.67876 -21.57096 -20.14482 -18.94918 -18.49583 -18.00345 -17.00919 -16.94541 -16.64017 -15.85527 -15.38381 -14.91556 -14.74799 -14.57016 -14.34031 -14.16225 -13.90095 -13.80004 -13.75940 -13.38819 -13.16988 -12.73604 -12.56965 -12.29462 -12.23488 -11.88045 -11.59821 -11.36048 -11.20077 -11.03954 -10.84902 -10.67367 -10.59585 -10.54475 -10.34052 -10.19856 -10.14345 -9.90831 -9.61828 -9.49494 -9.39648 -9.14472 -8.78672 -8.19390 -6.88556 -5.72705 -3.00412 0.34303 0.47218 2.52090 2.63585 3.10267 3.45547 3.49172 3.51712 3.52665 3.74893 4.02314 4.41379 4.58580 4.62404 4.64169 4.92556 5.00983 5.11707 5.31489 5.36779 5.41042 5.43217 5.48612 5.62899 5.67734 5.72413 5.82650 5.93651 6.05370 6.13752 6.15574 6.23138 6.26751 6.42613 6.52686 6.61336 6.65751 6.70525 6.71207 6.85841 7.00183 7.02719 7.14154 7.26198 7.69524 7.77308 8.15451 8.34301 8.46058 9.57716 10.14469 10.50442 11.49764 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011459 B = 0.003867 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.906461 B = 7238.206588 C = 8752.602098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.201 3.799 4 N -0.712 5.712 5 C -0.226 4.226 6 H 0.069 0.931 7 C -0.011 4.011 8 N -0.932 5.932 9 Si 0.899 3.101 10 H -0.292 1.292 11 H -0.294 1.294 12 H -0.283 1.283 13 C -0.135 4.135 14 C 0.088 3.912 15 N -0.572 5.572 16 C 0.571 3.429 17 O -0.548 6.548 18 C -0.001 4.001 19 C -0.033 4.033 20 C -0.141 4.141 21 C 0.275 3.725 22 O -0.299 6.299 23 C 0.032 3.968 24 N -0.303 5.303 25 N -0.153 5.153 26 C 0.114 3.886 27 C -0.129 4.129 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.383 0.617 34 H 0.253 0.747 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.169 0.831 40 H 0.162 0.838 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.577 1.107 11.152 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C 0.109 3.891 4 N -0.354 5.354 5 C -0.358 4.358 6 H 0.087 0.913 7 C -0.207 4.207 8 N -0.581 5.581 9 Si 0.731 3.269 10 H -0.220 1.220 11 H -0.221 1.221 12 H -0.208 1.208 13 C -0.175 4.175 14 C -0.034 4.034 15 N -0.302 5.302 16 C 0.356 3.644 17 O -0.427 6.427 18 C -0.149 4.149 19 C -0.061 4.061 20 C -0.170 4.170 21 C 0.091 3.909 22 O -0.203 6.203 23 C -0.063 4.063 24 N -0.161 5.161 25 N 0.000 5.000 26 C -0.008 4.008 27 C -0.168 4.168 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.218 0.782 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.137 0.863 39 H 0.186 0.814 40 H 0.180 0.820 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.337 0.809 10.152 18.410 hybrid contribution 0.295 0.269 -0.070 0.405 sum 15.632 1.078 10.082 18.632 Atomic orbital electron populations 1.21658 0.96116 0.99584 1.02425 1.21900 0.96380 0.98150 0.99800 1.19567 0.91050 0.91063 0.87406 1.42441 1.57506 1.35121 1.00294 1.19086 1.18008 1.15562 0.83108 0.91288 1.24668 0.99227 0.99299 0.97486 1.69649 1.30779 1.27722 1.29915 0.86314 0.77668 0.77428 0.85538 1.21998 1.22054 1.20844 1.22320 0.98279 0.95927 1.00973 1.22806 1.01209 0.92109 0.87303 1.48042 1.07310 1.48941 1.25876 1.17440 0.83581 0.79676 0.83698 1.90757 1.76520 1.51356 1.24020 1.22861 0.97114 1.01968 0.92979 1.22265 0.90961 0.91669 1.01216 1.21513 0.97456 1.03104 0.94964 1.21681 0.86491 0.91194 0.91572 1.86193 1.20751 1.80089 1.33234 1.23076 1.02101 1.01427 0.79676 1.73323 0.97007 1.16803 1.28951 1.73271 1.05455 1.07299 1.14015 1.21707 0.78844 0.97851 1.02395 1.22114 1.01437 0.95046 0.98192 0.90453 0.94952 0.94166 0.92249 0.94338 0.78227 0.93704 0.93761 0.90636 0.89064 0.86267 0.81364 0.82008 0.87994 0.91513 0.91503 0.90064 0.89810 0.90405 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.44 37.15 0.35 -2.14 16 2 C -0.12 -2.17 4.78 -26.74 -0.13 -2.29 16 3 C 0.20 3.67 0.43 -131.78 -0.06 3.61 16 4 N -0.71 -15.89 3.12 -47.19 -0.15 -16.04 16 5 C -0.23 -5.72 8.69 -15.06 -0.13 -5.85 16 6 H 0.07 1.73 6.75 -52.48 -0.35 1.37 16 7 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 8 N -0.93 -26.85 13.07 55.49 0.73 -26.13 16 9 Si 0.90 21.84 29.55 -169.99 -5.02 16.81 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 C -0.13 -2.36 4.66 -26.61 -0.12 -2.49 16 14 C 0.09 1.55 5.63 -3.71 -0.02 1.53 16 15 N -0.57 -9.74 2.97 -173.84 -0.52 -10.25 16 16 C 0.57 9.43 7.65 -12.29 -0.09 9.33 16 17 O -0.55 -9.80 15.85 5.33 0.08 -9.72 16 18 C 0.00 -0.02 6.65 -82.85 -0.55 -0.57 16 19 C -0.03 -0.36 9.71 -38.86 -0.38 -0.73 16 20 C -0.14 -1.32 10.14 -39.10 -0.40 -1.71 16 21 C 0.27 3.14 7.58 -16.77 -0.13 3.01 16 22 O -0.30 -2.96 10.48 -18.24 -0.19 -3.16 16 23 C 0.03 0.25 10.39 101.05 1.05 1.30 16 24 N -0.30 -4.21 10.40 30.55 0.32 -3.89 16 25 N -0.15 -2.32 7.34 33.31 0.24 -2.08 16 26 C 0.11 1.92 6.17 -3.70 -0.02 1.90 16 27 C -0.13 -2.11 4.72 -26.61 -0.13 -2.23 16 28 H 0.08 1.64 7.43 -51.93 -0.39 1.25 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.65 6.57 -51.93 -0.34 0.31 16 31 H 0.06 1.13 7.71 -51.93 -0.40 0.73 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.38 9.31 6.57 -40.82 -0.27 9.04 16 34 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.41 7.07 -51.93 -0.37 1.04 16 37 H 0.09 1.90 7.69 -51.93 -0.40 1.50 16 38 H 0.12 2.02 4.04 -129.71 -0.52 1.50 16 39 H 0.17 1.50 7.74 -52.49 -0.41 1.09 16 40 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 43 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 44 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16 45 H 0.08 1.36 7.00 -51.93 -0.36 1.00 16 46 H 0.08 1.24 6.51 -51.93 -0.34 0.90 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 371.62 15.07 5.60 5.60 Total: -1.00 -30.10 371.62 -6.78 -36.88 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -7.02 Total: 9.68 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -0.85 Total: 2.28 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.62 Total: -58.39 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.11 Total: -12.87 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.10 -6.78 -36.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700222493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.574 kcal (2) G-P(sol) polarization free energy of solvation -30.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds