Wall clock time and date at job start Tue Mar 31 2020 17:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47340 * 2 1 4 4 N 1.46503 * 109.45721 * 304.45917 * 3 2 1 5 5 C 1.36940 * 119.99888 * 297.25272 * 4 3 2 6 6 H 1.08003 * 120.00132 * 354.16646 * 5 4 3 7 7 C 1.38819 * 120.00068 * 174.16881 * 5 4 3 8 8 N 1.31616 * 119.99752 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00054 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47557 * 90.00025 * 9 7 5 11 11 H 1.48508 * 109.47082 * 210.00205 * 9 7 5 12 12 H 1.48505 * 109.47000 * 329.99831 * 9 7 5 13 13 C 1.53037 * 109.46328 * 184.48886 * 3 2 1 14 14 C 1.53188 * 109.31565 * 178.59484 * 13 3 2 15 15 N 1.46935 * 108.76364 * 54.65712 * 14 13 3 16 16 C 1.34771 * 120.63093 * 126.40702 * 15 14 13 17 17 O 1.21543 * 119.99620 * 187.74586 * 16 15 14 18 18 C 1.47935 * 120.00225 * 7.74177 * 16 15 14 19 19 C 1.39973 * 120.11410 * 189.30177 * 18 16 15 20 20 C 1.38424 * 117.96812 * 179.73809 * 19 18 16 21 21 C 1.39350 * 118.03465 * 0.52433 * 20 19 18 22 22 O 1.35515 * 120.03256 * 179.70759 * 21 20 19 23 23 C 1.42894 * 117.00467 * 180.02562 * 22 21 20 24 24 N 1.32680 * 119.94030 * 359.72551 * 21 20 19 25 25 N 1.28359 * 122.19931 * 0.02562 * 24 21 20 26 26 C 1.46932 * 118.73516 * 306.38173 * 15 14 13 27 27 C 1.53034 * 109.46130 * 64.42823 * 3 2 1 28 28 H 1.09003 * 109.47100 * 58.93679 * 1 2 3 29 29 H 1.09001 * 109.47269 * 178.94141 * 1 2 3 30 30 H 1.09003 * 109.47447 * 298.93857 * 1 2 3 31 31 H 1.08997 * 109.47507 * 239.99375 * 2 1 3 32 32 H 1.09003 * 109.47224 * 119.99586 * 2 1 3 33 33 H 0.96996 * 120.00586 * 117.24719 * 4 3 2 34 34 H 0.97005 * 120.00055 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.49876 * 298.56159 * 13 3 2 36 36 H 1.09004 * 109.49574 * 58.65684 * 13 3 2 37 37 H 1.08994 * 109.60232 * 294.86838 * 14 13 3 38 38 H 1.08996 * 109.58869 * 174.43427 * 14 13 3 39 39 H 1.08000 * 121.02003 * 359.97438 * 19 18 16 40 40 H 1.07997 * 120.98250 * 180.25286 * 20 19 18 41 41 H 1.08997 * 109.47288 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.47374 * 300.00394 * 23 22 21 43 43 H 1.09003 * 109.46830 * 59.99798 * 23 22 21 44 44 H 1.09002 * 109.58624 * 293.82554 * 26 15 14 45 45 H 1.08993 * 109.58392 * 173.39503 * 26 15 14 46 46 H 1.08994 * 109.50192 * 301.34306 * 27 3 2 47 47 H 1.09002 * 109.49772 * 61.44482 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4658 2.1631 -1.1390 5 6 1.7498 1.7615 -2.4170 6 1 2.4697 0.9749 -2.5884 7 6 1.1124 2.3654 -3.4922 8 7 0.2354 3.3244 -3.2833 9 14 1.4993 1.8171 -5.2354 10 1 0.5779 0.7197 -5.6252 11 1 1.3259 2.9625 -6.1646 12 1 2.9017 1.3332 -5.3023 13 6 3.5662 1.4437 -0.1129 14 6 4.0705 2.8897 -0.1480 15 7 3.5523 3.5997 1.0295 16 6 4.3884 4.2526 1.8607 17 8 3.9695 4.7157 2.9035 18 6 5.8159 4.4056 1.5040 19 6 6.7246 4.9070 2.4432 20 6 8.0505 5.0265 2.0640 21 6 8.3974 4.6510 0.7676 22 8 9.6828 4.7569 0.3518 23 6 9.9661 4.3544 -0.9897 24 7 7.4679 4.1901 -0.0594 25 7 6.2384 4.0733 0.2902 26 6 2.1051 3.5848 1.2830 27 6 1.6227 2.1308 1.3016 28 1 -0.3633 0.5303 -0.8803 29 1 -0.3634 -1.0275 -0.0190 30 1 -0.3634 0.4973 0.8994 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.8844 2.9247 -0.9879 34 1 -0.2103 3.7461 -4.0345 35 1 3.9950 0.9293 0.7471 36 1 3.8636 0.9326 -1.0286 37 1 3.7157 3.3789 -1.0551 38 1 5.1603 2.8972 -0.1287 39 1 6.4019 5.1884 3.4347 40 1 8.7934 5.4038 2.7511 41 1 11.0282 4.4902 -1.1932 42 1 9.7025 3.3046 -1.1174 43 1 9.3833 4.9621 -1.6820 44 1 1.5899 4.1305 0.4925 45 1 1.8981 4.0507 2.2463 46 1 0.5369 2.1089 1.3929 47 1 2.0701 1.6100 2.1482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700222493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:52 Heat of formation + Delta-G solvation = 2.150604 kcal Electronic energy + Delta-G solvation = -30061.360844 eV Core-core repulsion = 26052.719029 eV Total energy + Delta-G solvation = -4008.641815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.61322 -41.17984 -39.71427 -39.18372 -36.32596 -34.49867 -34.36130 -33.35728 -31.99294 -31.47097 -30.71308 -28.63324 -27.11821 -25.92112 -25.54027 -25.16309 -24.01442 -22.93589 -21.44683 -20.02065 -19.61027 -19.17601 -18.91051 -18.14059 -17.51955 -17.15799 -16.66479 -16.32539 -15.78323 -15.68480 -15.60236 -15.48610 -15.29877 -15.13473 -15.07197 -14.73329 -14.45284 -14.26710 -13.90552 -13.79238 -13.10199 -12.92014 -12.85941 -12.79443 -12.69284 -12.61815 -12.49891 -12.25435 -12.14704 -12.02922 -11.73640 -11.62071 -11.43871 -11.42376 -11.10580 -10.91242 -10.85193 -10.44955 -10.21181 -9.61926 -8.80037 -7.81073 -5.05030 -0.63675 -0.38608 1.49524 1.49791 1.50918 1.57408 1.70209 1.91413 2.43504 2.64310 2.73535 3.09355 3.41968 3.53478 3.73406 3.79829 3.87822 3.97502 4.10672 4.21916 4.25993 4.32641 4.37906 4.41917 4.52938 4.60129 4.68759 4.70907 4.73729 4.75676 4.79807 4.86541 4.89111 5.05178 5.13835 5.19323 5.22743 5.28183 5.39915 5.48819 5.58508 5.66877 5.69741 5.78566 5.84775 6.35975 6.41676 6.89160 7.32056 7.49109 8.25763 8.49600 9.42563 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011459 B = 0.003867 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.906461 B = 7238.206588 C = 8752.602098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.194 3.806 4 N -0.715 5.715 5 C -0.201 4.201 6 H 0.072 0.928 7 C -0.073 4.073 8 N -0.968 5.968 9 Si 0.950 3.050 10 H -0.294 1.294 11 H -0.305 1.305 12 H -0.273 1.273 13 C -0.129 4.129 14 C 0.100 3.900 15 N -0.578 5.578 16 C 0.573 3.427 17 O -0.563 6.563 18 C -0.018 4.018 19 C -0.028 4.028 20 C -0.118 4.118 21 C 0.271 3.729 22 O -0.296 6.296 23 C 0.027 3.973 24 N -0.326 5.326 25 N -0.182 5.182 26 C 0.117 3.883 27 C -0.120 4.120 28 H 0.035 0.965 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.371 0.629 34 H 0.244 0.756 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.133 0.867 39 H 0.191 0.809 40 H 0.205 0.795 41 H 0.135 0.865 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.102 0.406 13.429 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C 0.104 3.896 4 N -0.355 5.355 5 C -0.333 4.333 6 H 0.090 0.910 7 C -0.265 4.265 8 N -0.621 5.621 9 Si 0.782 3.218 10 H -0.222 1.222 11 H -0.233 1.233 12 H -0.198 1.198 13 C -0.170 4.170 14 C -0.023 4.023 15 N -0.307 5.307 16 C 0.359 3.641 17 O -0.442 6.442 18 C -0.167 4.167 19 C -0.056 4.056 20 C -0.147 4.147 21 C 0.086 3.914 22 O -0.199 6.199 23 C -0.068 4.068 24 N -0.184 5.184 25 N -0.029 5.029 26 C -0.005 4.005 27 C -0.158 4.158 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.204 0.796 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.149 0.851 39 H 0.208 0.792 40 H 0.222 0.778 41 H 0.153 0.847 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.110 0.890 46 H 0.100 0.900 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 17.908 0.068 12.449 21.810 hybrid contribution -0.316 0.510 -0.688 0.912 sum 17.593 0.578 11.761 21.170 Atomic orbital electron populations 1.21566 0.96117 1.00247 1.01200 1.21852 0.96282 0.97267 1.00421 1.19842 0.91364 0.91463 0.86962 1.42542 1.57208 1.35056 1.00669 1.19330 1.15969 1.13738 0.84276 0.91033 1.25248 1.00398 1.00409 1.00439 1.69790 1.32755 1.29624 1.29910 0.85457 0.77754 0.76390 0.82159 1.22224 1.23265 1.19792 1.22254 0.97531 0.95902 1.01269 1.22596 1.01968 0.91708 0.86024 1.48042 1.07403 1.49418 1.25860 1.17729 0.84471 0.78720 0.83209 1.90736 1.77181 1.51711 1.24575 1.22705 0.96391 1.03746 0.93857 1.22496 0.90934 0.90807 1.01355 1.21944 0.97521 1.00763 0.94432 1.21992 0.86661 0.90496 0.92225 1.86221 1.19665 1.79796 1.34199 1.23291 1.03992 1.00912 0.78563 1.73205 0.96942 1.18167 1.30093 1.73042 1.06388 1.08763 1.14735 1.21612 0.78961 0.98161 1.01815 1.22040 1.01831 0.94440 0.97482 0.94560 0.93239 0.92576 0.93956 0.91285 0.79579 0.94752 0.91440 0.91998 0.93126 0.85066 0.79219 0.77788 0.84715 0.91990 0.92353 0.92539 0.88962 0.89988 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 9.44 71.98 0.68 -3.90 16 2 C -0.12 -4.00 4.78 30.59 0.15 -3.85 16 3 C 0.19 6.96 0.43 3.63 0.00 6.96 16 4 N -0.71 -32.68 3.12 -303.22 -0.94 -33.63 16 5 C -0.20 -10.36 8.69 84.03 0.73 -9.63 16 6 H 0.07 3.62 6.75 -2.91 -0.02 3.60 16 7 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 8 N -0.97 -58.10 13.07 21.65 0.28 -57.81 16 9 Si 0.95 46.15 29.55 68.60 2.03 48.18 16 10 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 11 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 13 C -0.13 -4.45 4.66 30.67 0.14 -4.31 16 14 C 0.10 3.57 5.63 86.36 0.49 4.05 16 15 N -0.58 -19.60 2.97 -822.19 -2.44 -22.05 16 16 C 0.57 18.46 7.65 86.81 0.66 19.12 16 17 O -0.56 -19.40 15.85 -3.85 -0.06 -19.47 16 18 C -0.02 -0.51 6.65 42.00 0.28 -0.23 16 19 C -0.03 -0.54 9.71 22.73 0.22 -0.32 16 20 C -0.12 -1.78 10.14 22.58 0.23 -1.55 16 21 C 0.27 5.58 7.58 84.83 0.64 6.22 16 22 O -0.30 -5.09 10.48 -88.17 -0.92 -6.02 16 23 C 0.03 0.36 10.39 113.37 1.18 1.54 16 24 N -0.33 -8.80 10.40 -170.01 -1.77 -10.57 16 25 N -0.18 -5.48 7.34 -48.51 -0.36 -5.83 16 26 C 0.12 3.93 6.17 86.36 0.53 4.46 16 27 C -0.12 -3.74 4.72 30.67 0.14 -3.59 16 28 H 0.04 1.53 7.43 -2.39 -0.02 1.52 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.72 6.57 -2.39 -0.02 1.70 16 31 H 0.04 1.56 7.71 -2.39 -0.02 1.54 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.37 18.78 6.57 -92.71 -0.61 18.17 16 34 H 0.24 14.51 8.31 -92.70 -0.77 13.74 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 2.29 7.07 -2.38 -0.02 2.27 16 37 H 0.05 2.21 7.69 -2.39 -0.02 2.19 16 38 H 0.13 4.49 4.04 -103.00 -0.42 4.07 16 39 H 0.19 2.73 7.74 -2.91 -0.02 2.71 16 40 H 0.21 1.31 8.06 -2.91 -0.02 1.29 16 41 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.91 8.11 -2.39 -0.02 0.90 16 43 H 0.06 0.90 8.11 -2.39 -0.02 0.89 16 44 H 0.06 2.17 6.99 -2.39 -0.02 2.16 16 45 H 0.09 2.94 7.00 -2.39 -0.02 2.92 16 46 H 0.08 2.50 6.51 -2.39 -0.02 2.49 16 47 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -67.43 371.62 2.35 -65.08 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.01 Total: 30.74 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 6.55 Total: 11.36 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -5.23 Total: -129.88 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.99 Total: -25.48 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -67.43 2.35 -65.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700222493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.233 kcal (2) G-P(sol) polarization free energy of solvation -67.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds