Wall clock time and date at job start Tue Mar 31 2020 19:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47081 * 2 1 4 4 C 1.50696 * 109.47274 * 179.97438 * 3 2 1 5 5 N 1.34661 * 125.80547 * 265.13767 * 4 3 2 6 6 H 0.97009 * 124.84832 * 0.05789 * 5 4 3 7 7 C 1.36444 * 110.30463 * 180.29274 * 5 4 3 8 8 C 1.34487 * 108.85087 * 359.74579 * 7 5 4 9 9 C 1.36769 * 125.80509 * 84.99774 * 4 3 2 10 10 C 1.47264 * 126.93756 * 359.97438 * 9 4 3 11 11 O 1.21624 * 120.00230 * 359.70783 * 10 9 4 12 12 N 1.34785 * 119.99953 * 179.71081 * 10 9 4 13 13 C 1.46494 * 119.99920 * 180.02562 * 12 10 9 14 14 C 1.53517 * 114.16882 * 204.99950 * 13 12 10 15 15 N 1.47479 * 87.99753 * 220.35526 * 14 13 12 16 16 C 1.46897 * 110.99965 * 138.66774 * 15 14 13 17 17 C 1.50703 * 109.46984 * 169.99962 * 16 15 14 18 18 O 1.21293 * 120.00121 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99878 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99909 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99877 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00188 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99614 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00135 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47288 * 90.00034 * 24 22 20 26 26 H 1.48509 * 109.47130 * 209.99151 * 24 22 20 27 27 H 1.48493 * 109.47368 * 329.99589 * 24 22 20 28 28 C 1.47487 * 87.83637 * 26.97912 * 15 14 13 29 29 H 1.08999 * 109.47012 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47247 * 300.00216 * 1 2 3 31 31 H 1.09005 * 109.46870 * 60.00612 * 1 2 3 32 32 H 1.09001 * 109.47247 * 239.99784 * 2 1 3 33 33 H 1.08999 * 109.47013 * 120.00091 * 2 1 3 34 34 H 1.09001 * 109.47256 * 59.99789 * 3 2 1 35 35 H 1.08999 * 109.47271 * 299.99933 * 3 2 1 36 36 H 1.07998 * 125.57594 * 179.72280 * 7 5 4 37 37 H 1.07998 * 126.83095 * 180.02562 * 8 7 5 38 38 H 0.97002 * 119.99710 * 359.97438 * 12 10 9 39 39 H 1.09000 * 113.38305 * 338.07222 * 13 12 10 40 40 H 1.09002 * 113.47888 * 105.55885 * 14 13 12 41 41 H 1.09003 * 113.47419 * 335.15218 * 14 13 12 42 42 H 1.08993 * 109.47675 * 290.00415 * 16 15 14 43 43 H 1.09000 * 109.47111 * 50.00574 * 16 15 14 44 44 H 0.96999 * 119.99814 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99857 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.47787 * 87.75324 * 28 15 14 47 47 H 1.09001 * 113.47615 * 218.16496 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3343 1.5352 1.0891 6 1 4.0126 1.6122 2.0011 7 6 5.6493 1.5108 0.7258 8 6 5.7284 1.3955 -0.6118 9 6 4.3476 1.3456 -1.1040 10 6 3.9113 1.2223 -2.5051 11 8 2.7251 1.1929 -2.7724 12 7 4.8265 1.1418 -3.4913 13 6 4.3925 1.0196 -4.8852 14 6 5.4215 0.3511 -5.8076 15 7 5.0654 1.3437 -6.8385 16 6 6.2627 1.8297 -7.5372 17 6 5.8489 2.6461 -8.7345 18 8 4.6724 2.8076 -8.9812 19 7 6.7863 3.1967 -9.5312 20 6 6.4099 3.9398 -10.6201 21 1 5.3622 4.0836 -10.8397 22 6 7.3762 4.5071 -11.4418 23 7 8.6509 4.3316 -11.1748 24 14 6.8633 5.5189 -12.9258 25 1 6.7209 6.9428 -12.5288 26 1 7.8966 5.4018 -13.9859 27 1 5.5648 5.0169 -13.4425 28 6 4.6832 2.2582 -5.7463 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 6.4892 1.5742 1.4018 37 1 6.6295 1.3486 -1.2053 38 1 5.7725 1.1655 -3.2782 39 1 3.3797 0.6306 -4.9904 40 1 5.1603 -0.6714 -6.0807 41 1 6.4478 0.4433 -5.4521 42 1 6.8517 2.4492 -6.8611 43 1 6.8613 0.9802 -7.8661 44 1 7.7272 3.0678 -9.3337 45 1 9.3255 4.7279 -11.7482 46 1 5.5122 2.8600 -5.3737 47 1 3.7970 2.8528 -5.9679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714941767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:55 Heat of formation + Delta-G solvation = 2.089370 kcal Electronic energy + Delta-G solvation = -27749.230437 eV Core-core repulsion = 23740.585967 eV Total energy + Delta-G solvation = -4008.644470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.59913 -40.35656 -38.62338 -37.60087 -35.27655 -34.02227 -33.70267 -31.45346 -31.16003 -30.23981 -29.58713 -26.48619 -25.81964 -25.47497 -23.92974 -22.45921 -21.77879 -21.02969 -20.27097 -19.37388 -19.17280 -18.02756 -17.84965 -16.42200 -16.25705 -16.01119 -15.28691 -15.27917 -15.07828 -14.72605 -14.52928 -14.34461 -14.19595 -13.95757 -13.72642 -13.52005 -13.18555 -13.14074 -12.91995 -12.74813 -12.52375 -12.19816 -12.08903 -11.61319 -11.55825 -11.48128 -11.43236 -11.10057 -11.02696 -10.89799 -10.56401 -10.35366 -10.16925 -9.89643 -9.45234 -9.20635 -8.96537 -8.76668 -8.47535 -8.16029 -7.90976 -6.37071 -3.77459 1.53271 2.12078 2.75745 3.21382 3.26578 3.29614 3.36394 3.44049 3.96006 4.11572 4.29921 4.38538 4.54325 4.61875 4.70439 4.81617 4.90256 4.94807 5.03346 5.05640 5.15290 5.22384 5.28721 5.38615 5.42543 5.49288 5.54004 5.60086 5.64160 5.70948 5.73011 5.75315 5.86780 5.98838 6.04000 6.06628 6.17901 6.30230 6.42903 6.50326 6.57824 6.64467 7.08877 7.19550 7.56317 7.59913 8.11244 8.31202 8.67592 9.23652 9.59870 10.12774 10.80946 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022055 B = 0.001883 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.261046 B =14864.199293 C =15438.183107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.060 4.060 4 C 0.110 3.890 5 N -0.553 5.553 6 H 0.415 0.585 7 C -0.018 4.018 8 C -0.168 4.168 9 C -0.233 4.233 10 C 0.592 3.408 11 O -0.544 6.544 12 N -0.715 5.715 13 C 0.122 3.878 14 C -0.014 4.014 15 N -0.435 5.435 16 C 0.011 3.989 17 C 0.447 3.553 18 O -0.573 6.573 19 N -0.568 5.568 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.904 5.904 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.009 4.009 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.169 0.831 37 H 0.145 0.855 38 H 0.399 0.601 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.391 0.609 45 H 0.270 0.730 46 H 0.069 0.931 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 -8.647 29.151 30.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.098 4.098 4 C -0.008 4.008 5 N -0.148 5.148 6 H 0.252 0.748 7 C -0.145 4.145 8 C -0.193 4.193 9 C -0.243 4.243 10 C 0.381 3.619 11 O -0.423 6.423 12 N -0.366 5.366 13 C 0.017 3.983 14 C -0.144 4.144 15 N -0.157 5.157 16 C -0.121 4.121 17 C 0.232 3.768 18 O -0.456 6.456 19 N -0.206 5.206 20 C -0.426 4.426 21 H 0.120 0.880 22 C -0.181 4.181 23 N -0.546 5.546 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.139 4.139 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.186 0.814 37 H 0.162 0.838 38 H 0.233 0.767 39 H 0.147 0.853 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.947 -8.639 28.223 30.109 hybrid contribution 1.890 0.824 0.430 2.106 sum -4.057 -7.815 28.653 29.976 Atomic orbital electron populations 1.21749 0.95335 1.01768 1.01950 1.21400 0.96016 0.95344 1.02206 1.20414 0.86540 0.98725 1.04076 1.20362 0.93469 1.01247 0.85712 1.41613 1.06269 1.58138 1.08762 0.74849 1.21718 0.85642 1.10526 0.96591 1.22040 0.95800 1.07600 0.93820 1.20144 0.93168 1.18714 0.92293 1.17369 0.85407 0.75224 0.83923 1.90756 1.16513 1.50874 1.84154 1.45730 1.09586 1.75192 1.06043 1.22647 1.00337 0.97014 0.78350 1.24318 0.98083 0.99654 0.92366 1.68784 1.26238 1.06598 1.14057 1.22495 0.92581 0.99735 0.97303 1.19667 0.86794 0.84732 0.85621 1.90534 1.17595 1.63532 1.73894 1.41865 1.08048 1.46057 1.24601 1.19701 0.94776 1.26068 1.02038 0.87961 1.25246 0.94818 0.98472 0.99541 1.69615 0.99611 1.45610 1.39757 0.85859 0.78320 0.79682 0.80445 1.20476 1.20971 1.19416 1.24435 1.02388 0.96365 0.90728 0.92665 0.93081 0.92035 0.90881 0.92869 0.91589 0.87636 0.81400 0.83765 0.76680 0.85287 0.88965 0.91230 0.92263 0.89293 0.77586 0.91977 0.91304 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.11 -0.91 5.92 -26.73 -0.16 -1.07 16 3 C -0.06 -0.50 5.06 -27.89 -0.14 -0.64 16 4 C 0.11 0.99 6.43 -81.88 -0.53 0.46 16 5 N -0.55 -3.34 5.90 -9.11 -0.05 -3.40 16 6 H 0.42 1.22 8.96 -40.82 -0.37 0.85 16 7 C -0.02 -0.11 11.89 -16.83 -0.20 -0.31 16 8 C -0.17 -1.35 10.56 -37.50 -0.40 -1.74 16 9 C -0.23 -2.45 6.29 -103.35 -0.65 -3.10 16 10 C 0.59 7.51 7.81 -12.59 -0.10 7.41 16 11 O -0.54 -8.44 14.34 5.26 0.08 -8.36 16 12 N -0.72 -7.86 5.38 -54.57 -0.29 -8.16 16 13 C 0.12 1.58 4.60 -67.61 -0.31 1.27 16 14 C -0.01 -0.18 7.45 -7.54 -0.06 -0.23 16 15 N -0.43 -7.44 5.82 -245.87 -1.43 -8.88 16 16 C 0.01 0.20 5.30 -4.98 -0.03 0.17 16 17 C 0.45 10.95 7.85 -10.98 -0.09 10.86 16 18 O -0.57 -16.34 16.01 5.55 0.09 -16.25 16 19 N -0.57 -14.74 5.29 -10.96 -0.06 -14.80 16 20 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 21 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 24 Si 0.93 21.47 29.55 -169.99 -5.02 16.45 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 28 C -0.01 -0.14 7.53 -7.47 -0.06 -0.19 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.11 1.13 6.76 -51.93 -0.35 0.78 16 36 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.14 0.88 7.70 -52.49 -0.40 0.48 16 38 H 0.40 3.39 7.88 -40.82 -0.32 3.07 16 39 H 0.13 1.88 7.45 -51.93 -0.39 1.49 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.71 7.90 -51.93 -0.41 0.30 16 42 H 0.06 0.94 7.30 -51.93 -0.38 0.56 16 43 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 44 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.07 0.98 7.42 -51.93 -0.39 0.59 16 47 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 LS Contribution 394.24 15.07 5.94 5.94 Total: -1.00 -35.79 394.24 -9.66 -45.45 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -7.05 Total: 12.18 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -2.58 Total: 4.01 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -1.11 Total: -59.42 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: 0.16 Total: -24.61 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.79 -9.66 -45.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714941767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.544 kcal (2) G-P(sol) polarization free energy of solvation -35.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds