Wall clock time and date at job start Tue Mar 31 2020 19:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47081 * 2 1 4 4 C 1.50696 * 109.47274 * 179.97438 * 3 2 1 5 5 N 1.34661 * 125.80547 * 265.13767 * 4 3 2 6 6 H 0.97009 * 124.84832 * 0.05789 * 5 4 3 7 7 C 1.36444 * 110.30463 * 180.29274 * 5 4 3 8 8 C 1.34487 * 108.85087 * 359.74579 * 7 5 4 9 9 C 1.36769 * 125.80509 * 84.99774 * 4 3 2 10 10 C 1.47264 * 126.93756 * 359.97438 * 9 4 3 11 11 O 1.21624 * 120.00230 * 359.70783 * 10 9 4 12 12 N 1.34785 * 119.99953 * 179.71081 * 10 9 4 13 13 C 1.46494 * 119.99920 * 180.02562 * 12 10 9 14 14 C 1.53517 * 114.16882 * 204.99950 * 13 12 10 15 15 N 1.47479 * 87.99753 * 220.35526 * 14 13 12 16 16 C 1.46897 * 110.99965 * 138.66774 * 15 14 13 17 17 C 1.50703 * 109.46984 * 169.99962 * 16 15 14 18 18 O 1.21293 * 120.00121 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99878 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99909 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99877 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00188 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99614 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00135 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47288 * 90.00034 * 24 22 20 26 26 H 1.48509 * 109.47130 * 209.99151 * 24 22 20 27 27 H 1.48493 * 109.47368 * 329.99589 * 24 22 20 28 28 C 1.47487 * 87.83637 * 26.97912 * 15 14 13 29 29 H 1.08999 * 109.47012 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47247 * 300.00216 * 1 2 3 31 31 H 1.09005 * 109.46870 * 60.00612 * 1 2 3 32 32 H 1.09001 * 109.47247 * 239.99784 * 2 1 3 33 33 H 1.08999 * 109.47013 * 120.00091 * 2 1 3 34 34 H 1.09001 * 109.47256 * 59.99789 * 3 2 1 35 35 H 1.08999 * 109.47271 * 299.99933 * 3 2 1 36 36 H 1.07998 * 125.57594 * 179.72280 * 7 5 4 37 37 H 1.07998 * 126.83095 * 180.02562 * 8 7 5 38 38 H 0.97002 * 119.99710 * 359.97438 * 12 10 9 39 39 H 1.09000 * 113.38305 * 338.07222 * 13 12 10 40 40 H 1.09002 * 113.47888 * 105.55885 * 14 13 12 41 41 H 1.09003 * 113.47419 * 335.15218 * 14 13 12 42 42 H 1.08993 * 109.47675 * 290.00415 * 16 15 14 43 43 H 1.09000 * 109.47111 * 50.00574 * 16 15 14 44 44 H 0.96999 * 119.99814 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99857 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.47787 * 87.75324 * 28 15 14 47 47 H 1.09001 * 113.47615 * 218.16496 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3343 1.5352 1.0891 6 1 4.0126 1.6122 2.0011 7 6 5.6493 1.5108 0.7258 8 6 5.7284 1.3955 -0.6118 9 6 4.3476 1.3456 -1.1040 10 6 3.9113 1.2223 -2.5051 11 8 2.7251 1.1929 -2.7724 12 7 4.8265 1.1418 -3.4913 13 6 4.3925 1.0196 -4.8852 14 6 5.4215 0.3511 -5.8076 15 7 5.0654 1.3437 -6.8385 16 6 6.2627 1.8297 -7.5372 17 6 5.8489 2.6461 -8.7345 18 8 4.6724 2.8076 -8.9812 19 7 6.7863 3.1967 -9.5312 20 6 6.4099 3.9398 -10.6201 21 1 5.3622 4.0836 -10.8397 22 6 7.3762 4.5071 -11.4418 23 7 8.6509 4.3316 -11.1748 24 14 6.8633 5.5189 -12.9258 25 1 6.7209 6.9428 -12.5288 26 1 7.8966 5.4018 -13.9859 27 1 5.5648 5.0169 -13.4425 28 6 4.6832 2.2582 -5.7463 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 6.4892 1.5742 1.4018 37 1 6.6295 1.3486 -1.2053 38 1 5.7725 1.1655 -3.2782 39 1 3.3797 0.6306 -4.9904 40 1 5.1603 -0.6714 -6.0807 41 1 6.4478 0.4433 -5.4521 42 1 6.8517 2.4492 -6.8611 43 1 6.8613 0.9802 -7.8661 44 1 7.7272 3.0678 -9.3337 45 1 9.3255 4.7279 -11.7482 46 1 5.5122 2.8600 -5.3737 47 1 3.7970 2.8528 -5.9679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714941767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:54 Heat of formation + Delta-G solvation = -26.548540 kcal Electronic energy + Delta-G solvation = -27750.472270 eV Core-core repulsion = 23740.585967 eV Total energy + Delta-G solvation = -4009.886303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.22377 -41.52126 -39.94621 -39.22500 -35.99568 -35.89075 -34.90683 -33.28855 -32.14904 -30.92822 -30.77279 -27.51659 -26.96708 -26.86563 -25.34865 -23.44918 -22.44597 -21.66403 -21.27237 -21.02541 -20.24711 -19.89978 -18.60876 -17.87676 -17.48949 -17.12766 -16.54956 -16.49159 -16.15969 -15.95194 -15.79035 -15.67194 -15.17215 -15.03839 -14.85234 -14.66361 -14.26144 -14.02258 -13.74462 -13.73072 -13.66654 -13.55239 -13.49595 -13.01147 -12.73856 -12.68221 -12.43283 -12.29724 -12.21101 -12.12044 -12.10014 -11.81833 -11.56465 -11.50087 -10.89740 -10.39189 -10.08017 -10.00684 -9.78302 -9.67937 -9.08440 -8.46623 -5.95063 0.77260 1.37487 1.40909 1.53903 1.59320 2.05620 2.07980 2.29509 2.50683 2.57449 2.93667 3.19365 3.34327 3.57064 3.78493 3.81251 4.01650 4.05846 4.12287 4.18288 4.28427 4.29597 4.36486 4.41691 4.43491 4.53394 4.58482 4.69890 4.73308 4.80447 4.85633 4.95138 4.96776 5.02348 5.13386 5.25737 5.32770 5.39350 5.40542 5.41265 5.53877 5.84459 5.88559 6.02984 6.07742 6.61579 6.63780 6.75379 7.13728 7.40182 7.57018 8.14456 8.70804 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022055 B = 0.001883 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.261046 B =14864.199293 C =15438.183107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.057 4.057 4 C 0.102 3.898 5 N -0.538 5.538 6 H 0.432 0.568 7 C -0.003 4.003 8 C -0.186 4.186 9 C -0.265 4.265 10 C 0.584 3.416 11 O -0.584 6.584 12 N -0.702 5.702 13 C 0.136 3.864 14 C 0.003 3.997 15 N -0.473 5.473 16 C 0.025 3.975 17 C 0.440 3.560 18 O -0.622 6.622 19 N -0.575 5.575 20 C -0.334 4.334 21 H 0.075 0.925 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.268 1.268 27 H -0.276 1.276 28 C -0.012 4.012 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.206 0.794 37 H 0.161 0.839 38 H 0.414 0.586 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.085 0.915 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.766 -9.010 31.576 32.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.095 4.095 4 C -0.018 4.018 5 N -0.135 5.135 6 H 0.271 0.729 7 C -0.130 4.130 8 C -0.209 4.209 9 C -0.276 4.276 10 C 0.375 3.625 11 O -0.466 6.466 12 N -0.353 5.353 13 C 0.029 3.971 14 C -0.126 4.126 15 N -0.196 5.196 16 C -0.106 4.106 17 C 0.227 3.773 18 O -0.508 6.508 19 N -0.213 5.213 20 C -0.463 4.463 21 H 0.093 0.907 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.193 1.193 27 H -0.200 1.200 28 C -0.142 4.142 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.223 0.777 37 H 0.179 0.821 38 H 0.251 0.749 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.106 0.894 43 H 0.133 0.867 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.103 0.897 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.643 -9.015 30.698 32.201 hybrid contribution 1.179 0.933 -0.248 1.523 sum -2.464 -8.082 30.450 31.601 Atomic orbital electron populations 1.21738 0.94800 1.02106 1.01983 1.21331 0.96472 0.95161 1.01453 1.20332 0.86690 0.98654 1.03800 1.20394 0.93724 1.01288 0.86411 1.41624 1.06121 1.56756 1.08957 0.72861 1.22315 0.86255 1.07912 0.96545 1.22311 0.95084 1.08574 0.94941 1.20180 0.95164 1.20918 0.91294 1.17857 0.85013 0.74470 0.85201 1.90736 1.18224 1.52759 1.84879 1.45540 1.10255 1.74655 1.04837 1.22245 0.99831 0.95606 0.79439 1.24325 0.99502 0.98810 0.89950 1.68707 1.26670 1.08272 1.15949 1.22382 0.93342 0.99947 0.94959 1.20865 0.85873 0.83973 0.86604 1.90500 1.19729 1.65130 1.75397 1.41923 1.08592 1.46230 1.24507 1.19630 0.93991 1.28520 1.04209 0.90726 1.26016 0.94738 0.98831 1.01668 1.69663 1.00148 1.45623 1.40563 0.84943 0.77947 0.78235 0.77291 1.19623 1.19281 1.20047 1.24460 1.01604 0.96981 0.91154 0.92188 0.91206 0.93798 0.93936 0.91129 0.88963 0.90724 0.77720 0.82140 0.74871 0.87586 0.87905 0.87738 0.89434 0.86684 0.76884 0.91274 0.89666 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.46 16 2 C -0.11 -1.74 5.92 30.59 0.18 -1.56 16 3 C -0.06 -0.94 5.06 29.84 0.15 -0.79 16 4 C 0.10 1.72 6.43 41.78 0.27 1.99 16 5 N -0.54 -5.01 5.90 -182.73 -1.08 -6.09 16 6 H 0.43 1.06 8.96 -92.70 -0.83 0.23 16 7 C 0.00 -0.02 11.89 83.12 0.99 0.96 16 8 C -0.19 -2.53 10.56 23.62 0.25 -2.28 16 9 C -0.27 -5.43 6.29 -19.04 -0.12 -5.55 16 10 C 0.58 15.23 7.81 86.61 0.68 15.91 16 11 O -0.58 -19.48 14.34 -4.11 -0.06 -19.54 16 12 N -0.70 -15.09 5.38 -444.79 -2.39 -17.48 16 13 C 0.14 3.52 4.60 45.47 0.21 3.73 16 14 C 0.00 0.07 7.45 83.58 0.62 0.69 16 15 N -0.47 -16.02 5.82 -931.81 -5.43 -21.44 16 16 C 0.03 0.88 5.30 85.56 0.45 1.34 16 17 C 0.44 21.90 7.85 87.66 0.69 22.59 16 18 O -0.62 -36.96 16.01 -3.07 -0.05 -37.01 16 19 N -0.57 -30.28 5.29 -306.97 -1.62 -31.90 16 20 C -0.33 -19.54 9.68 84.04 0.81 -18.73 16 21 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -50.02 13.05 21.66 0.28 -49.74 16 24 Si 0.99 43.94 29.55 68.60 2.03 45.97 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 28 C -0.01 -0.36 7.53 83.62 0.63 0.27 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.04 0.95 7.95 -2.39 -0.02 0.93 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.73 6.76 -2.39 -0.02 1.71 16 36 H 0.21 0.21 8.06 -2.91 -0.02 0.19 16 37 H 0.16 1.49 7.70 -2.91 -0.02 1.47 16 38 H 0.41 6.24 7.88 -92.71 -0.73 5.51 16 39 H 0.11 3.29 7.45 -2.39 -0.02 3.28 16 40 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.10 1.69 7.90 -2.39 -0.02 1.67 16 42 H 0.09 2.55 7.30 -2.39 -0.02 2.54 16 43 H 0.12 3.40 8.08 -2.39 -0.02 3.38 16 44 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 45 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 46 H 0.09 2.35 7.42 -2.39 -0.02 2.33 16 47 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -82.31 394.24 -2.60 -84.91 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: -1.27 Total: 35.45 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 6.99 Total: 16.88 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -10.24 Total: -126.65 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -0.11 Total: -56.55 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -82.31 -2.60 -84.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714941767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.362 kcal (2) G-P(sol) polarization free energy of solvation -82.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds